Wall clock time and date at job start Mon Mar 30 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46886 * 2 1 4 4 C 1.42903 * 114.00053 * 180.02562 * 3 2 1 5 5 C 1.50692 * 109.47549 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99504 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00493 * 179.97438 * 5 4 3 8 8 C 1.46505 * 120.00485 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.49393 * 34.99847 * 8 7 5 10 10 C 1.53035 * 109.50074 * 155.06337 * 8 7 5 11 11 C 1.53035 * 109.54018 * 181.28215 * 10 8 7 12 12 C 1.53185 * 109.34449 * 298.68723 * 11 10 8 13 13 H 1.09002 * 109.70481 * 294.76261 * 12 11 10 14 14 C 1.52997 * 109.58865 * 174.40194 * 12 11 10 15 15 N 1.46931 * 108.77296 * 54.61730 * 12 11 10 16 16 C 1.36936 * 120.62841 * 126.41721 * 15 12 11 17 17 H 1.07992 * 120.00128 * 330.14233 * 16 15 12 18 18 C 1.38815 * 119.99813 * 150.14782 * 16 15 12 19 19 N 1.31616 * 120.00246 * 344.49960 * 18 16 15 20 20 Si 1.86799 * 120.00116 * 164.50355 * 18 16 15 21 21 H 1.48495 * 109.47302 * 59.99739 * 20 18 16 22 22 H 1.48491 * 109.47285 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46978 * 300.00077 * 20 18 16 24 24 C 1.46922 * 118.73964 * 306.39172 * 15 12 11 25 25 H 1.08997 * 109.46879 * 60.00291 * 1 2 3 26 26 H 1.08997 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46807 * 299.99861 * 1 2 3 28 28 H 1.09002 * 109.47259 * 240.00143 * 2 1 3 29 29 H 1.08999 * 109.47384 * 119.99801 * 2 1 3 30 30 H 1.09005 * 109.46804 * 299.99770 * 4 3 2 31 31 H 1.08999 * 109.47307 * 59.99538 * 4 3 2 32 32 H 0.97004 * 119.99803 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.46003 * 301.34315 * 10 8 7 34 34 H 1.09001 * 109.45614 * 61.30008 * 10 8 7 35 35 H 1.09004 * 109.49513 * 178.71385 * 11 10 8 36 36 H 1.09008 * 109.49545 * 58.65859 * 11 10 8 37 37 H 1.08995 * 109.47267 * 300.71307 * 14 12 11 38 38 H 1.08999 * 109.46723 * 60.71883 * 14 12 11 39 39 H 1.09003 * 109.46877 * 180.70702 * 14 12 11 40 40 H 0.97000 * 120.00533 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58722 * 293.82582 * 24 15 12 42 42 H 1.09001 * 109.70456 * 173.47022 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9609 3.7729 -0.0016 7 7 5.1209 3.2664 -0.0013 8 6 5.4987 4.6819 -0.0024 9 1 4.7791 5.2509 0.5864 10 6 6.8941 4.8387 0.6059 11 6 7.2766 6.3202 0.6345 12 6 7.3087 6.8636 -0.7974 13 1 8.1060 6.3755 -1.3579 14 6 7.5530 8.3737 -0.7675 15 7 6.0156 6.5865 -1.4375 16 6 5.2950 7.5949 -2.0197 17 1 5.3707 8.6024 -1.6384 18 6 4.4670 7.3220 -3.1000 19 7 4.5946 6.1889 -3.7572 20 14 3.1717 8.5631 -3.6209 21 1 3.8309 9.8420 -3.9883 22 1 2.4244 8.0369 -4.7912 23 1 2.2297 8.7968 -2.4970 24 6 5.5106 5.2068 -1.4415 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8340 0.9766 0.8892 31 1 3.8333 0.9768 -0.8907 32 1 5.8075 2.5812 -0.0013 33 1 6.8940 4.4434 1.6218 34 1 7.6169 4.2892 0.0028 35 1 8.2610 6.4331 1.0887 36 1 6.5411 6.8746 1.2176 37 1 6.7576 8.8593 -0.2024 38 1 8.5127 8.5771 -0.2924 39 1 7.5630 8.7603 -1.7866 40 1 4.0159 5.9980 -4.5119 41 1 6.1610 4.5814 -2.0531 42 1 4.4987 5.1870 -1.8462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131798316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:24 Heat of formation + Delta-G solvation = -67.881674 kcal Electronic energy + Delta-G solvation = -21697.568167 eV Core-core repulsion = 18485.183528 eV Total energy + Delta-G solvation = -3212.384639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.53436 -38.01014 -37.13361 -34.32141 -32.77161 -31.65898 -30.72663 -29.82631 -27.62061 -25.68150 -24.72751 -22.86566 -22.23908 -20.83101 -19.99352 -19.21006 -16.92161 -16.77131 -16.43566 -16.23700 -15.35941 -14.94512 -14.45231 -14.10235 -13.79247 -13.71014 -13.34045 -13.06555 -12.74884 -12.59686 -12.51282 -12.33483 -11.81809 -11.52215 -11.36289 -11.29351 -11.08282 -10.85137 -10.64692 -10.48210 -10.37223 -10.23430 -9.93199 -9.72127 -9.69589 -9.41559 -9.22842 -8.49168 -8.36388 -6.56178 -5.69537 -3.14413 3.03093 3.10556 3.46674 3.53022 3.55434 4.12338 4.58616 4.91135 4.92603 5.11740 5.17339 5.23052 5.26364 5.37641 5.40664 5.52330 5.55143 5.61135 5.71225 5.80216 6.00099 6.03003 6.13106 6.29821 6.33392 6.42177 6.48465 6.53590 6.65443 6.77755 6.95292 7.05475 7.09890 7.16361 7.36623 7.78147 7.89914 7.97287 8.55100 8.70832 9.29360 9.93652 10.49107 11.38747 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.005655 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.902740 B = 4949.760904 C = 6328.392798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.046 3.954 5 C 0.508 3.492 6 O -0.511 6.511 7 N -0.721 5.721 8 C 0.118 3.882 9 H 0.082 0.918 10 C -0.115 4.115 11 C -0.126 4.126 12 C 0.165 3.835 13 H 0.025 0.975 14 C -0.136 4.136 15 N -0.583 5.583 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.008 3.992 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.169 3.831 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.392 0.608 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -12.046 8.954 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.034 4.034 5 C 0.292 3.708 6 O -0.385 6.385 7 N -0.374 5.374 8 C 0.013 3.987 9 H 0.100 0.900 10 C -0.154 4.154 11 C -0.166 4.166 12 C 0.059 3.941 13 H 0.042 0.958 14 C -0.194 4.194 15 N -0.307 5.307 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.191 4.191 19 N -0.544 5.544 20 Si 0.730 3.270 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.042 3.958 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.224 0.776 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.289 -11.279 8.785 14.355 hybrid contribution -0.123 -0.187 -0.373 0.435 sum 1.166 -11.466 8.412 14.269 Atomic orbital electron populations 1.21726 0.93565 1.01980 1.03577 1.22520 0.95938 0.83745 0.99928 1.88059 1.18787 1.25885 1.95355 1.22213 0.83689 0.95468 1.02034 1.20102 0.83159 0.90107 0.77443 1.90772 1.49174 1.51506 1.47062 1.45966 1.06303 1.09259 1.75828 1.21990 0.95351 0.79372 1.01994 0.90027 1.21672 0.96416 0.97894 0.99376 1.22047 0.99992 0.94802 0.99760 1.20485 0.88996 0.94002 0.90662 0.95780 1.21802 0.99015 0.96525 1.02053 1.44011 1.16842 1.04752 1.65082 1.19085 1.20681 0.90317 1.08387 0.91297 1.25081 1.01027 0.97284 0.95742 1.69985 1.39248 1.24684 1.20517 0.86400 0.82057 0.80686 0.77814 1.20930 1.21681 1.20879 1.21062 1.01334 0.84419 0.89025 0.91570 0.91176 0.91747 0.93282 0.93461 0.90833 0.90488 0.77559 0.93093 0.92284 0.92693 0.92066 0.92813 0.94374 0.91969 0.93677 0.96539 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.10 16 2 C 0.06 0.60 6.66 37.16 0.25 0.84 16 3 O -0.36 -5.67 9.88 -55.14 -0.54 -6.21 16 4 C 0.05 0.62 6.42 36.00 0.23 0.85 16 5 C 0.51 9.27 7.87 -10.99 -0.09 9.19 16 6 O -0.51 -12.32 16.16 -14.36 -0.23 -12.55 16 7 N -0.72 -11.77 5.08 -53.69 -0.27 -12.04 16 8 C 0.12 2.33 2.60 -67.81 -0.18 2.15 16 9 H 0.08 1.86 7.58 -51.93 -0.39 1.46 16 10 C -0.12 -1.86 5.36 -26.69 -0.14 -2.01 16 11 C -0.13 -2.16 5.37 -26.62 -0.14 -2.31 16 12 C 0.17 3.42 3.50 -67.60 -0.24 3.18 16 13 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 14 C -0.14 -2.59 7.95 37.16 0.30 -2.30 16 15 N -0.58 -14.78 2.99 -164.78 -0.49 -15.27 16 16 C -0.26 -7.12 8.57 -15.06 -0.13 -7.25 16 17 H 0.07 1.87 6.24 -52.49 -0.33 1.54 16 18 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 19 N -0.90 -27.18 11.23 55.49 0.62 -26.56 16 20 Si 0.90 22.87 29.58 -169.99 -5.03 17.85 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 24 C 0.17 4.15 4.86 -3.71 -0.02 4.13 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.39 4.75 8.60 -40.82 -0.35 4.40 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.28 7.63 -51.93 -0.40 0.88 16 40 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.72 6.15 -51.93 -0.32 2.40 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -34.74 336.55 -7.97 -42.71 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.23 Total: 1.49 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 0.14 Total: 5.52 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.14 Total: -53.88 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.78 Total: -18.76 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.74 -7.97 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131798316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.174 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds