Wall clock time and date at job start Mon Mar 30 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46886 * 2 1 4 4 C 1.42903 * 114.00053 * 180.02562 * 3 2 1 5 5 C 1.50692 * 109.47549 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99504 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00493 * 179.97438 * 5 4 3 8 8 C 1.46505 * 120.00485 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.49393 * 34.99847 * 8 7 5 10 10 C 1.53035 * 109.50074 * 155.06337 * 8 7 5 11 11 C 1.53035 * 109.54018 * 181.28215 * 10 8 7 12 12 C 1.53185 * 109.34449 * 298.68723 * 11 10 8 13 13 H 1.09002 * 109.70481 * 294.76261 * 12 11 10 14 14 C 1.52997 * 109.58865 * 174.40194 * 12 11 10 15 15 N 1.46931 * 108.77296 * 54.61730 * 12 11 10 16 16 C 1.36936 * 120.62841 * 126.41721 * 15 12 11 17 17 H 1.07992 * 120.00128 * 330.14233 * 16 15 12 18 18 C 1.38815 * 119.99813 * 150.14782 * 16 15 12 19 19 N 1.31616 * 120.00246 * 344.49960 * 18 16 15 20 20 Si 1.86799 * 120.00116 * 164.50355 * 18 16 15 21 21 H 1.48495 * 109.47302 * 59.99739 * 20 18 16 22 22 H 1.48491 * 109.47285 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46978 * 300.00077 * 20 18 16 24 24 C 1.46922 * 118.73964 * 306.39172 * 15 12 11 25 25 H 1.08997 * 109.46879 * 60.00291 * 1 2 3 26 26 H 1.08997 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46807 * 299.99861 * 1 2 3 28 28 H 1.09002 * 109.47259 * 240.00143 * 2 1 3 29 29 H 1.08999 * 109.47384 * 119.99801 * 2 1 3 30 30 H 1.09005 * 109.46804 * 299.99770 * 4 3 2 31 31 H 1.08999 * 109.47307 * 59.99538 * 4 3 2 32 32 H 0.97004 * 119.99803 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.46003 * 301.34315 * 10 8 7 34 34 H 1.09001 * 109.45614 * 61.30008 * 10 8 7 35 35 H 1.09004 * 109.49513 * 178.71385 * 11 10 8 36 36 H 1.09008 * 109.49545 * 58.65859 * 11 10 8 37 37 H 1.08995 * 109.47267 * 300.71307 * 14 12 11 38 38 H 1.08999 * 109.46723 * 60.71883 * 14 12 11 39 39 H 1.09003 * 109.46877 * 180.70702 * 14 12 11 40 40 H 0.97000 * 120.00533 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58722 * 293.82582 * 24 15 12 42 42 H 1.09001 * 109.70456 * 173.47022 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9609 3.7729 -0.0016 7 7 5.1209 3.2664 -0.0013 8 6 5.4987 4.6819 -0.0024 9 1 4.7791 5.2509 0.5864 10 6 6.8941 4.8387 0.6059 11 6 7.2766 6.3202 0.6345 12 6 7.3087 6.8636 -0.7974 13 1 8.1060 6.3755 -1.3579 14 6 7.5530 8.3737 -0.7675 15 7 6.0156 6.5865 -1.4375 16 6 5.2950 7.5949 -2.0197 17 1 5.3707 8.6024 -1.6384 18 6 4.4670 7.3220 -3.1000 19 7 4.5946 6.1889 -3.7572 20 14 3.1717 8.5631 -3.6209 21 1 3.8309 9.8420 -3.9883 22 1 2.4244 8.0369 -4.7912 23 1 2.2297 8.7968 -2.4970 24 6 5.5106 5.2068 -1.4415 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8340 0.9766 0.8892 31 1 3.8333 0.9768 -0.8907 32 1 5.8075 2.5812 -0.0013 33 1 6.8940 4.4434 1.6218 34 1 7.6169 4.2892 0.0028 35 1 8.2610 6.4331 1.0887 36 1 6.5411 6.8746 1.2176 37 1 6.7576 8.8593 -0.2024 38 1 8.5127 8.5771 -0.2924 39 1 7.5630 8.7603 -1.7866 40 1 4.0159 5.9980 -4.5119 41 1 6.1610 4.5814 -2.0531 42 1 4.4987 5.1870 -1.8462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131798316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:24 Heat of formation + Delta-G solvation = -93.005352 kcal Electronic energy + Delta-G solvation = -21698.657611 eV Core-core repulsion = 18485.183528 eV Total energy + Delta-G solvation = -3213.474084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99450 -39.43226 -38.45824 -35.98008 -34.65772 -32.73707 -32.07265 -31.72945 -28.85830 -27.52098 -26.38790 -24.01595 -23.67589 -22.37423 -21.52866 -20.89004 -18.37381 -18.17032 -17.91341 -17.36575 -17.08249 -16.49925 -15.91016 -15.68973 -15.47099 -15.14535 -15.00604 -14.54583 -14.14661 -13.95648 -13.87518 -13.50850 -13.22887 -13.06406 -12.77022 -12.70521 -12.57261 -12.32360 -12.29670 -12.17743 -12.13018 -11.97718 -11.65523 -11.40576 -11.14163 -10.75171 -10.65204 -10.53969 -10.07194 -8.62171 -7.86521 -5.32744 1.38797 1.45424 1.48951 1.63962 1.90323 2.49211 3.05553 3.30594 3.64731 3.83269 3.99851 4.10170 4.15894 4.17393 4.27122 4.32828 4.35172 4.40978 4.50236 4.62034 4.71790 4.80369 4.82665 4.90301 5.01307 5.02193 5.07660 5.19369 5.25468 5.31287 5.34166 5.48275 5.55172 5.61440 5.69872 5.80046 6.14879 6.41038 6.67365 7.15399 7.36678 7.89874 8.38792 9.18522 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.005655 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.902740 B = 4949.760904 C = 6328.392798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.409 6.409 4 C 0.054 3.946 5 C 0.498 3.502 6 O -0.582 6.582 7 N -0.704 5.704 8 C 0.131 3.869 9 H 0.046 0.954 10 C -0.106 4.106 11 C -0.119 4.119 12 C 0.153 3.847 13 H 0.024 0.976 14 C -0.130 4.130 15 N -0.604 5.604 16 C -0.254 4.254 17 H 0.074 0.926 18 C -0.053 4.053 19 N -0.934 5.934 20 Si 0.955 3.045 21 H -0.265 1.265 22 H -0.296 1.296 23 H -0.288 1.288 24 C 0.180 3.820 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.417 0.583 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.244 0.756 41 H 0.001 0.999 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 -13.534 10.955 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.025 4.025 5 C 0.284 3.716 6 O -0.461 6.461 7 N -0.358 5.358 8 C 0.025 3.975 9 H 0.064 0.936 10 C -0.143 4.143 11 C -0.158 4.158 12 C 0.048 3.952 13 H 0.041 0.959 14 C -0.187 4.187 15 N -0.329 5.329 16 C -0.384 4.384 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.580 5.580 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.223 1.223 23 H -0.215 1.215 24 C 0.053 3.947 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.122 0.878 32 H 0.254 0.746 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.357 -12.800 10.814 17.090 hybrid contribution -0.700 0.252 -0.967 1.220 sum 2.657 -12.548 9.847 16.170 Atomic orbital electron populations 1.21792 0.93527 1.03533 1.02168 1.22804 0.96107 0.81914 1.01917 1.88015 1.19995 1.29019 1.95800 1.22284 0.83327 0.91552 1.05337 1.21200 0.82779 0.92061 0.75521 1.90741 1.51123 1.53966 1.50293 1.45750 1.06800 1.08588 1.74657 1.21506 0.97217 0.80737 0.98075 0.93573 1.21639 0.93547 0.97803 1.01352 1.21958 1.02091 0.94959 0.96808 1.20818 0.86460 0.95431 0.92475 0.95866 1.21739 1.00987 0.95134 1.00875 1.44323 1.18870 1.04323 1.65348 1.19443 1.20199 0.91206 1.07549 0.90853 1.25801 1.03335 0.99067 0.96571 1.70142 1.40191 1.26511 1.21137 0.85513 0.79751 0.79490 0.76848 1.19029 1.22268 1.21463 1.20753 0.97630 0.84609 0.91750 0.93426 0.88092 0.92737 0.91732 0.90797 0.86271 0.87844 0.74573 0.89404 0.90500 0.88418 0.93146 0.93678 0.90162 0.94388 0.94654 0.98137 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.05 0.94 6.66 71.98 0.48 1.42 16 3 O -0.41 -12.50 9.88 -129.94 -1.28 -13.78 16 4 C 0.05 1.34 6.42 71.23 0.46 1.79 16 5 C 0.50 18.22 7.87 87.66 0.69 18.91 16 6 O -0.58 -29.54 16.16 15.99 0.26 -29.28 16 7 N -0.70 -22.24 5.08 -442.18 -2.25 -24.49 16 8 C 0.13 5.15 2.60 45.07 0.12 5.27 16 9 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 10 C -0.11 -3.05 5.36 30.62 0.16 -2.89 16 11 C -0.12 -3.69 5.37 30.67 0.16 -3.52 16 12 C 0.15 6.14 3.50 44.97 0.16 6.29 16 13 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 14 C -0.13 -4.74 7.95 71.98 0.57 -4.16 16 15 N -0.60 -31.25 2.99 -675.24 -2.02 -33.26 16 16 C -0.25 -14.57 8.57 84.03 0.72 -13.85 16 17 H 0.07 4.06 6.24 -2.91 -0.02 4.04 16 18 C -0.05 -3.15 4.94 84.86 0.42 -2.73 16 19 N -0.93 -59.23 11.23 21.65 0.24 -58.99 16 20 Si 0.96 48.79 29.58 68.60 2.03 50.82 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 23 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 24 C 0.18 9.17 4.86 86.36 0.42 9.59 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.42 8.88 8.60 -92.71 -0.80 8.08 16 33 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.04 1.69 7.44 -2.39 -0.02 1.68 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 1.53 7.63 -2.39 -0.02 1.52 16 40 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 42 H 0.04 2.32 6.15 -2.39 -0.01 2.30 16 Total: -1.00 -83.36 336.55 2.28 -81.08 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.19 Total: 13.92 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.10 Total: 13.99 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -4.02 Total: -116.74 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.02 Total: -43.06 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -83.36 2.28 -81.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131798316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.926 kcal (2) G-P(sol) polarization free energy of solvation -83.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds