Wall clock time and date at job start Mon Mar 30 2020 01:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 4 3 7 7 C 1.52999 * 113.61451 * 220.01770 * 6 5 4 8 8 C 1.50699 * 109.47130 * 272.49762 * 7 6 5 9 9 O 1.21284 * 119.99980 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00176 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47047 * 180.02562 * 11 10 8 13 13 N 1.46494 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.36937 * 120.00199 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99759 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00285 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46921 * 90.00285 * 18 16 14 20 20 H 1.48497 * 109.46848 * 210.00252 * 18 16 14 21 21 H 1.48498 * 109.47280 * 330.00152 * 18 16 14 22 22 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 23 23 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 24 24 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 25 25 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 27 27 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 29 29 H 1.09003 * 113.60734 * 254.54335 * 5 4 3 30 30 H 1.08996 * 113.61146 * 25.43833 * 5 4 3 31 31 H 1.09005 * 113.69135 * 89.12376 * 6 5 4 32 32 H 1.09003 * 109.47100 * 32.49589 * 7 6 5 33 33 H 1.08995 * 109.47213 * 152.50009 * 7 6 5 34 34 H 0.97002 * 119.99970 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.46915 * 299.99927 * 11 10 8 36 36 H 1.08995 * 109.47026 * 60.00119 * 11 10 8 37 37 H 1.09003 * 109.47100 * 299.99687 * 12 11 10 38 38 H 1.08998 * 109.46907 * 59.99688 * 12 11 10 39 39 H 0.97002 * 119.99985 * 359.97438 * 13 12 11 40 40 H 0.97000 * 120.00305 * 179.97438 * 17 16 14 41 41 H 1.09005 * 113.61302 * 334.47944 * 22 4 3 42 42 H 1.08993 * 113.62030 * 105.38790 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 4.9921 2.8184 -0.4551 7 6 5.2358 4.2379 -0.9712 8 6 6.3561 4.2205 -1.9791 9 8 6.9052 3.1755 -2.2574 10 7 6.7472 5.3660 -2.5718 11 6 7.8359 5.3490 -3.5520 12 6 8.0798 6.7685 -4.0680 13 7 9.1689 6.7516 -5.0477 14 6 9.5663 7.9154 -5.6499 15 1 9.0766 8.8458 -5.4029 16 6 10.5986 7.8994 -6.5778 17 7 11.1951 6.7656 -6.8792 18 14 11.1412 9.4873 -7.3987 19 1 12.2118 10.1224 -6.5889 20 1 11.6594 9.1897 -8.7581 21 1 9.9839 10.4120 -7.5016 22 6 3.9476 2.7433 0.6711 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9274 0.5544 0.3481 29 1 4.4870 1.2518 -1.9338 30 1 3.3049 2.6303 -1.8742 31 1 5.9159 2.2854 -0.2300 32 1 4.3281 4.6137 -1.4435 33 1 5.5069 4.8860 -0.1379 34 1 6.3079 6.2017 -2.3494 35 1 8.7439 4.9734 -3.0800 36 1 7.5646 4.7007 -4.3851 37 1 7.1720 7.1445 -4.5399 38 1 8.3512 7.4164 -3.2346 39 1 9.6084 5.9159 -5.2698 40 1 11.9162 6.7543 -7.5279 41 1 3.2296 3.5634 0.6562 42 1 4.3802 2.5761 1.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132750818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:00 Heat of formation + Delta-G solvation = -65.413179 kcal Electronic energy + Delta-G solvation = -19843.578153 eV Core-core repulsion = 16631.300555 eV Total energy + Delta-G solvation = -3212.277597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19386 -39.02101 -36.74195 -35.59818 -33.79885 -31.69883 -31.23344 -29.99019 -27.45006 -25.92134 -24.00432 -23.24050 -22.72875 -21.44042 -20.26433 -19.65501 -17.45887 -17.09340 -16.80091 -15.96372 -15.79638 -15.55097 -15.33748 -14.60213 -14.44565 -14.13143 -13.52765 -13.32079 -13.17616 -13.05696 -12.83002 -12.64145 -12.51806 -12.36114 -11.63095 -11.52140 -11.36930 -11.10629 -11.05266 -10.90593 -10.81710 -10.78909 -10.51831 -10.12206 -9.84450 -9.67082 -9.59964 -8.97361 -8.79612 -6.99408 -5.79647 -3.10388 2.79127 3.26386 3.42265 3.44954 3.48255 3.49542 4.28774 4.36083 4.55689 4.57594 4.59668 4.73909 4.83284 4.93788 4.96014 5.02967 5.29286 5.34176 5.42310 5.49051 5.50372 5.54328 5.55391 5.58955 5.59916 5.75838 5.79350 5.85940 5.97302 5.98299 6.16573 6.20871 6.51946 6.71447 6.77215 7.00943 7.65576 7.67239 8.37028 8.39532 9.49165 10.04215 10.38935 11.42918 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055835 B = 0.002242 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.359581 B =12486.531927 C =12538.178525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.061 3.939 5 C -0.147 4.147 6 C -0.092 4.092 7 C -0.129 4.129 8 C 0.509 3.491 9 O -0.542 6.542 10 N -0.726 5.726 11 C 0.111 3.889 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.132 4.132 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.091 0.909 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 -10.602 17.079 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.003 3.997 5 C -0.185 4.185 6 C -0.111 4.111 7 C -0.169 4.169 8 C 0.295 3.705 9 O -0.419 6.419 10 N -0.378 5.378 11 C -0.013 4.013 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.169 4.169 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.418 -11.031 16.803 27.948 hybrid contribution 0.510 0.796 -0.532 1.085 sum -18.909 -10.235 16.271 26.963 Atomic orbital electron populations 1.21750 0.93886 1.02175 1.03094 1.22495 0.95521 0.84164 0.99976 1.87941 1.20867 1.26132 1.94649 1.23685 0.80771 0.97932 0.97314 1.23547 0.97808 1.00267 0.96898 1.22069 0.97920 0.94889 0.96227 1.21635 0.98024 0.98726 0.98483 1.20641 0.84292 0.83627 0.81962 1.90697 1.56585 1.30996 1.63657 1.45989 1.37854 1.10120 1.43790 1.21556 0.89272 0.99227 0.91262 1.20758 0.92534 0.92317 0.92752 1.42195 1.38904 1.08786 1.47600 1.19200 1.13544 0.87332 1.17446 0.91025 1.24788 0.98961 0.97113 1.00034 1.69668 1.26777 1.24394 1.37035 0.86141 0.78447 0.82547 0.78726 1.21628 1.21686 1.20711 1.23306 0.97702 0.97811 0.98085 0.91932 0.91833 0.91221 0.93372 0.93525 0.89647 0.90955 0.89376 0.87898 0.88747 0.88669 0.76714 0.91408 0.91412 0.95832 0.95837 0.78016 0.93364 0.89014 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.41 6.50 37.16 0.24 0.65 16 3 O -0.38 -3.71 10.36 -35.23 -0.36 -4.07 16 4 C 0.06 0.54 4.30 -25.92 -0.11 0.43 16 5 C -0.15 -1.47 7.47 -25.92 -0.19 -1.67 16 6 C -0.09 -0.88 3.15 -89.81 -0.28 -1.16 16 7 C -0.13 -1.19 5.54 -27.88 -0.15 -1.35 16 8 C 0.51 7.00 7.83 -10.99 -0.09 6.91 16 9 O -0.54 -9.71 15.76 5.55 0.09 -9.62 16 10 N -0.73 -9.81 5.56 -60.29 -0.33 -10.15 16 11 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 12 C 0.14 2.85 6.37 -4.05 -0.03 2.83 16 13 N -0.73 -18.73 5.60 -59.91 -0.34 -19.06 16 14 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 18 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.13 -1.05 7.47 -25.92 -0.19 -1.24 16 23 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.89 7.90 -51.93 -0.41 0.48 16 31 H 0.10 1.12 7.68 -51.93 -0.40 0.72 16 32 H 0.09 0.74 7.84 -51.93 -0.41 0.33 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 4.17 8.47 -40.82 -0.35 3.83 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -33.48 350.78 -7.98 -41.46 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.32 Total: 7.22 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.73 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.05 Total: -56.91 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.28 Total: -13.69 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.48 -7.98 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132750818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.955 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds