Wall clock time and date at job start Mon Mar 30 2020 01:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 4 3 7 7 C 1.52999 * 113.61451 * 220.01770 * 6 5 4 8 8 C 1.50699 * 109.47130 * 272.49762 * 7 6 5 9 9 O 1.21284 * 119.99980 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00176 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47047 * 180.02562 * 11 10 8 13 13 N 1.46494 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.36937 * 120.00199 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99759 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00285 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46921 * 90.00285 * 18 16 14 20 20 H 1.48497 * 109.46848 * 210.00252 * 18 16 14 21 21 H 1.48498 * 109.47280 * 330.00152 * 18 16 14 22 22 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 23 23 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 24 24 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 25 25 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 27 27 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 29 29 H 1.09003 * 113.60734 * 254.54335 * 5 4 3 30 30 H 1.08996 * 113.61146 * 25.43833 * 5 4 3 31 31 H 1.09005 * 113.69135 * 89.12376 * 6 5 4 32 32 H 1.09003 * 109.47100 * 32.49589 * 7 6 5 33 33 H 1.08995 * 109.47213 * 152.50009 * 7 6 5 34 34 H 0.97002 * 119.99970 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.46915 * 299.99927 * 11 10 8 36 36 H 1.08995 * 109.47026 * 60.00119 * 11 10 8 37 37 H 1.09003 * 109.47100 * 299.99687 * 12 11 10 38 38 H 1.08998 * 109.46907 * 59.99688 * 12 11 10 39 39 H 0.97002 * 119.99985 * 359.97438 * 13 12 11 40 40 H 0.97000 * 120.00305 * 179.97438 * 17 16 14 41 41 H 1.09005 * 113.61302 * 334.47944 * 22 4 3 42 42 H 1.08993 * 113.62030 * 105.38790 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 4.9921 2.8184 -0.4551 7 6 5.2358 4.2379 -0.9712 8 6 6.3561 4.2205 -1.9791 9 8 6.9052 3.1755 -2.2574 10 7 6.7472 5.3660 -2.5718 11 6 7.8359 5.3490 -3.5520 12 6 8.0798 6.7685 -4.0680 13 7 9.1689 6.7516 -5.0477 14 6 9.5663 7.9154 -5.6499 15 1 9.0766 8.8458 -5.4029 16 6 10.5986 7.8994 -6.5778 17 7 11.1951 6.7656 -6.8792 18 14 11.1412 9.4873 -7.3987 19 1 12.2118 10.1224 -6.5889 20 1 11.6594 9.1897 -8.7581 21 1 9.9839 10.4120 -7.5016 22 6 3.9476 2.7433 0.6711 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9274 0.5544 0.3481 29 1 4.4870 1.2518 -1.9338 30 1 3.3049 2.6303 -1.8742 31 1 5.9159 2.2854 -0.2300 32 1 4.3281 4.6137 -1.4435 33 1 5.5069 4.8860 -0.1379 34 1 6.3079 6.2017 -2.3494 35 1 8.7439 4.9734 -3.0800 36 1 7.5646 4.7007 -4.3851 37 1 7.1720 7.1445 -4.5399 38 1 8.3512 7.4164 -3.2346 39 1 9.6084 5.9159 -5.2698 40 1 11.9162 6.7543 -7.5279 41 1 3.2296 3.5634 0.6562 42 1 4.3802 2.5761 1.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132750818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:00 Heat of formation + Delta-G solvation = -89.290369 kcal Electronic energy + Delta-G solvation = -19844.613545 eV Core-core repulsion = 16631.300555 eV Total energy + Delta-G solvation = -3213.312990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11539 -39.96905 -37.56538 -37.12210 -35.44999 -33.22770 -32.19408 -30.98815 -29.01512 -26.62284 -25.70230 -24.13236 -23.56175 -22.98008 -21.36819 -20.39760 -19.33246 -18.10450 -17.77013 -16.87881 -16.82395 -16.57011 -16.43585 -16.28878 -15.53962 -15.36592 -15.10425 -14.84744 -14.39721 -14.07896 -13.63877 -13.33597 -13.24472 -13.11409 -13.04449 -12.93436 -12.64822 -12.51484 -12.22024 -12.16323 -12.08834 -11.87047 -11.74766 -11.59480 -11.23779 -10.99757 -10.83169 -10.33005 -10.10225 -9.07558 -7.97623 -5.29257 1.48036 1.50613 1.59061 1.69719 2.15928 2.57825 2.80468 3.36486 3.53424 3.65509 3.85245 3.88983 3.98363 4.06121 4.14678 4.20645 4.21201 4.24466 4.37234 4.50690 4.56352 4.64222 4.72169 4.76336 4.87365 4.90212 4.92133 5.03494 5.04730 5.11501 5.13293 5.25926 5.29191 5.40796 5.47742 5.50929 6.23083 6.36879 6.60835 7.29080 7.31139 8.01183 8.24093 9.26034 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055835 B = 0.002242 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.359581 B =12486.531927 C =12538.178525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.393 6.393 4 C 0.059 3.941 5 C -0.154 4.154 6 C -0.094 4.094 7 C -0.118 4.118 8 C 0.505 3.495 9 O -0.589 6.589 10 N -0.715 5.715 11 C 0.127 3.873 12 C 0.149 3.851 13 N -0.748 5.748 14 C -0.249 4.249 15 H 0.084 0.916 16 C -0.078 4.078 17 N -0.971 5.971 18 Si 0.981 3.019 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.265 1.265 22 C -0.117 4.117 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.418 0.582 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.100 0.900 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.386 -9.208 18.596 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.313 6.313 4 C 0.002 3.998 5 C -0.192 4.192 6 C -0.113 4.113 7 C -0.157 4.157 8 C 0.294 3.706 9 O -0.469 6.469 10 N -0.368 5.368 11 C 0.002 3.998 12 C 0.022 3.978 13 N -0.391 5.391 14 C -0.380 4.380 15 H 0.102 0.898 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.809 3.191 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.190 1.190 22 C -0.154 4.154 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.255 0.745 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.205 0.795 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.153 -9.593 18.368 29.612 hybrid contribution 0.962 0.303 -0.963 1.394 sum -20.191 -9.290 17.405 28.230 Atomic orbital electron populations 1.21762 0.92955 1.03251 1.02699 1.22679 0.96361 0.83391 1.00483 1.87914 1.21189 1.27476 1.94692 1.23737 0.80632 0.98848 0.96612 1.23578 0.98101 1.00144 0.97356 1.22018 0.97481 0.94829 0.96981 1.21688 0.96757 0.99222 0.98036 1.21517 0.84601 0.82598 0.81933 1.90687 1.58344 1.32704 1.65200 1.45828 1.36834 1.11321 1.42803 1.21101 0.89932 0.97346 0.91391 1.20857 0.91176 0.93819 0.91945 1.42444 1.40268 1.07691 1.48729 1.19669 1.13085 0.88422 1.16873 0.89839 1.25700 0.99605 1.00432 1.01331 1.69841 1.27559 1.26712 1.38025 0.85037 0.78273 0.78745 0.77041 1.21235 1.22311 1.19004 1.23224 0.96827 0.97379 0.97976 0.91948 0.92544 0.89460 0.93489 0.92403 0.88964 0.92927 0.89530 0.89612 0.86500 0.85608 0.74528 0.93146 0.93308 0.94511 0.94391 0.79528 0.93906 0.88147 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.66 6.50 71.98 0.47 1.12 16 3 O -0.39 -7.24 10.36 -148.98 -1.54 -8.78 16 4 C 0.06 0.98 4.30 31.12 0.13 1.12 16 5 C -0.15 -3.01 7.47 31.12 0.23 -2.78 16 6 C -0.09 -1.67 3.15 -10.27 -0.03 -1.70 16 7 C -0.12 -1.87 5.54 29.85 0.17 -1.71 16 8 C 0.51 13.34 7.83 87.66 0.69 14.03 16 9 O -0.59 -21.39 15.76 -3.04 -0.05 -21.44 16 10 N -0.71 -18.22 5.56 -463.05 -2.57 -20.79 16 11 C 0.13 4.42 5.79 86.38 0.50 4.92 16 12 C 0.15 5.71 6.37 86.38 0.55 6.26 16 13 N -0.75 -38.46 5.60 -343.46 -1.92 -40.39 16 14 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 15 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 16 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 17 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 18 Si 0.98 45.91 29.55 68.60 2.03 47.93 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.12 -1.57 7.47 31.12 0.23 -1.34 16 23 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 1.36 7.88 -2.39 -0.02 1.34 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.69 7.90 -2.39 -0.02 1.67 16 31 H 0.09 1.84 7.68 -2.38 -0.02 1.82 16 32 H 0.12 1.42 7.84 -2.39 -0.02 1.40 16 33 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.42 7.55 8.47 -92.71 -0.79 6.77 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 40 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.10 1.22 8.10 -2.38 -0.02 1.20 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.80 350.78 0.71 -72.09 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.50 Total: 29.52 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 4.98 Total: 1.91 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -4.21 Total: -121.23 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.59 Total: -30.22 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -72.80 0.71 -72.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132750818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.205 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds