Wall clock time and date at job start Mon Mar 30 2020 01:11:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42899 * 109.47165 * 2 1
4 4 C 1.42895 * 113.99811 * 185.12471 * 3 2 1
5 5 H 1.08997 * 109.47487 * 337.30342 * 4 3 2
6 6 C 1.50700 * 109.47161 * 217.30697 * 4 3 2
7 7 O 1.21284 * 119.99921 * 354.99651 * 6 4 3
8 8 N 1.34779 * 120.00171 * 175.00009 * 6 4 3
9 9 C 1.46502 * 119.99886 * 179.97438 * 8 6 4
10 10 C 1.52997 * 109.46988 * 180.02562 * 9 8 6
11 11 C 1.53003 * 109.47290 * 180.02562 * 10 9 8
12 12 N 1.46499 * 109.47176 * 179.97438 * 11 10 9
13 13 C 1.36940 * 119.99578 * 179.97438 * 12 11 10
14 14 H 1.08000 * 120.00197 * 0.02562 * 13 12 11
15 15 C 1.38814 * 119.99514 * 179.97438 * 13 12 11
16 16 N 1.31616 * 120.00171 * 0.02562 * 15 13 12
17 17 Si 1.86797 * 119.99570 * 180.02562 * 15 13 12
18 18 H 1.48498 * 109.47393 * 60.00005 * 17 15 13
19 19 H 1.48504 * 109.46891 * 179.97438 * 17 15 13
20 20 H 1.48505 * 109.47328 * 299.99833 * 17 15 13
21 21 C 1.53001 * 109.47399 * 97.30602 * 4 3 2
22 22 C 1.53004 * 117.51569 * 347.00030 * 21 4 3
23 23 C 1.52996 * 60.00001 * 107.48034 * 22 21 4
24 24 H 1.08997 * 109.46946 * 60.00654 * 1 2 3
25 25 H 1.09003 * 109.46894 * 180.02562 * 1 2 3
26 26 H 1.08995 * 109.47387 * 300.00686 * 1 2 3
27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3
28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3
29 29 H 0.97003 * 119.99812 * 0.02562 * 8 6 4
30 30 H 1.09008 * 109.46805 * 300.00096 * 9 8 6
31 31 H 1.08998 * 109.47123 * 59.99807 * 9 8 6
32 32 H 1.08997 * 109.47421 * 300.00211 * 10 9 8
33 33 H 1.08998 * 109.47365 * 59.99932 * 10 9 8
34 34 H 1.09008 * 109.46536 * 300.00093 * 11 10 9
35 35 H 1.08998 * 109.47090 * 59.99619 * 11 10 9
36 36 H 0.96992 * 120.00087 * 359.97438 * 12 11 10
37 37 H 0.97000 * 120.00125 * 180.02562 * 16 15 13
38 38 H 1.09003 * 115.55126 * 201.29423 * 21 4 3
39 39 H 1.09002 * 117.49133 * 214.97007 * 22 21 4
40 40 H 1.08997 * 117.50016 * 359.97438 * 22 21 4
41 41 H 1.09000 * 117.49658 * 252.50667 * 23 22 21
42 42 H 1.08997 * 117.50320 * 107.49270 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4259 1.4618 -0.1166
5 1 3.8937 0.5345 0.2142
6 6 3.9101 2.6024 0.7411
7 8 3.1107 3.3099 1.3169
8 7 5.2313 2.8363 0.8685
9 6 5.7018 3.9455 1.7019
10 6 7.2309 3.9905 1.6750
11 6 7.7224 5.1485 2.5459
12 7 9.1865 5.1912 2.5207
13 6 9.8558 6.1514 3.2318
14 1 9.3042 6.8768 3.8114
15 6 11.2431 6.1915 3.2083
16 7 11.9153 5.3072 2.5023
17 14 12.1560 7.5007 4.1787
18 1 11.8253 7.3691 5.6204
19 1 13.6187 7.3276 3.9891
20 1 11.7500 8.8461 3.6986
21 6 3.7980 1.7280 -1.5766
22 6 2.7105 1.5195 -2.6325
23 6 3.1542 2.9357 -2.2607
24 1 -0.3633 0.5137 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5139 0.8899
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 5.8705 2.2707 0.4076
30 1 5.3041 4.8841 1.3158
31 1 5.3601 3.8003 2.7267
32 1 7.6289 3.0520 2.0607
33 1 7.5722 4.1359 0.6501
34 1 7.3243 6.0873 2.1605
35 1 7.3811 5.0027 3.5708
36 1 9.6818 4.5395 2.0004
37 1 12.8847 5.3350 2.4861
38 1 4.8226 1.4797 -1.8535
39 1 3.0198 1.1340 -3.6040
40 1 1.7299 1.1921 -2.2872
41 1 2.4654 3.5403 -1.6708
42 1 3.7553 3.4820 -2.9876
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001158131774.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:11:35
Heat of formation + Delta-G solvation = -55.903425 kcal
Electronic energy + Delta-G solvation = -20385.461222 eV
Core-core repulsion = 17173.595999 eV
Total energy + Delta-G solvation = -3211.865224 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.34238 -38.35817 -36.32924 -35.95396 -34.31290 -32.09571 -31.66327 -29.84269
-28.02266 -25.02685 -23.33681 -22.74838 -22.46542 -21.61862 -21.15410 -20.01374
-17.61759 -17.16602 -16.92250 -16.72406 -15.65393 -15.49540 -15.22048 -14.78306
-14.49490 -14.11015 -13.82624 -13.27139 -13.06585 -12.91593 -12.82823 -12.58816
-12.34593 -11.79086 -11.66504 -11.61593 -11.48006 -10.98933 -10.90730 -10.87192
-10.75279 -10.67035 -10.60741 -10.11067 -10.06615 -9.72958 -9.45350 -9.03604
-8.87548 -6.93775 -5.77340 -3.06240 2.54516 2.74446 3.39873 3.44812
3.48715 3.50039 3.74734 4.29262 4.53389 4.55220 4.59302 4.72246
4.81679 4.91181 4.96278 5.03100 5.05676 5.15418 5.31814 5.33885
5.42798 5.56788 5.57411 5.62390 5.63508 5.77280 5.87221 5.97414
5.99427 6.07066 6.19054 6.32095 6.44958 6.77707 6.79823 6.83400
7.47635 7.69718 8.19792 8.41760 9.52755 10.09844 10.44589 11.45655
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.042233 B = 0.002647 C = 0.002581
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 662.822143 B =10576.336922 C =10847.373958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.052 3.948
3 O -0.353 6.353
4 C 0.104 3.896
5 H 0.090 0.910
6 C 0.515 3.485
7 O -0.522 6.522
8 N -0.723 5.723
9 C 0.124 3.876
10 C -0.137 4.137
11 C 0.156 3.844
12 N -0.734 5.734
13 C -0.240 4.240
14 H 0.071 0.929
15 C -0.015 4.015
16 N -0.935 5.935
17 Si 0.909 3.091
18 H -0.286 1.286
19 H -0.291 1.291
20 H -0.285 1.285
21 C -0.185 4.185
22 C -0.165 4.165
23 C -0.164 4.164
24 H 0.063 0.937
25 H 0.071 0.929
26 H 0.065 0.935
27 H 0.053 0.947
28 H 0.050 0.950
29 H 0.400 0.600
30 H 0.069 0.931
31 H 0.068 0.932
32 H 0.068 0.932
33 H 0.069 0.931
34 H 0.022 0.978
35 H 0.022 0.978
36 H 0.383 0.617
37 H 0.256 0.744
38 H 0.118 0.882
39 H 0.094 0.906
40 H 0.102 0.898
41 H 0.100 0.900
42 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.936 -13.575 -10.182 26.180
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.025 4.025
3 O -0.271 6.271
4 C 0.042 3.958
5 H 0.108 0.892
6 C 0.299 3.701
7 O -0.397 6.397
8 N -0.376 5.376
9 C 0.001 3.999
10 C -0.175 4.175
11 C 0.028 3.972
12 N -0.378 5.378
13 C -0.371 4.371
14 H 0.089 0.911
15 C -0.211 4.211
16 N -0.584 5.584
17 Si 0.740 3.260
18 H -0.212 1.212
19 H -0.217 1.217
20 H -0.212 1.212
21 C -0.204 4.204
22 C -0.202 4.202
23 C -0.201 4.201
24 H 0.082 0.918
25 H 0.090 0.910
26 H 0.084 0.916
27 H 0.071 0.929
28 H 0.068 0.932
29 H 0.234 0.766
30 H 0.087 0.913
31 H 0.087 0.913
32 H 0.087 0.913
33 H 0.087 0.913
34 H 0.040 0.960
35 H 0.040 0.960
36 H 0.217 0.783
37 H 0.065 0.935
38 H 0.136 0.864
39 H 0.112 0.888
40 H 0.120 0.880
41 H 0.118 0.882
42 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -20.623 -12.745 -9.621 26.082
hybrid contribution 1.358 -0.054 0.090 1.362
sum -19.264 -12.799 -9.531 25.015
Atomic orbital electron populations
1.21732 0.93421 1.02230 1.03404 1.22650 0.95931 0.83610 1.00273
1.88036 1.18611 1.26338 1.94087 1.21329 0.83825 0.97622 0.93049
0.89215 1.20298 0.82599 0.85684 0.81500 1.90722 1.54298 1.48188
1.46530 1.45971 1.06559 1.34100 1.51015 1.21362 0.94695 0.89039
0.94853 1.21940 0.92741 1.01029 1.01810 1.20522 0.86361 0.94288
0.96026 1.42330 0.99477 1.37246 1.58752 1.19207 0.89266 1.06895
1.21771 0.91137 1.24755 0.96355 0.99256 1.00719 1.69647 1.06525
1.37329 1.44894 0.86235 0.78786 0.81277 0.79705 1.21226 1.21674
1.21213 1.22713 0.99028 1.06454 0.92181 1.22945 0.99083 1.00092
0.98115 1.22918 1.03345 0.90940 1.02887 0.91825 0.91017 0.91592
0.92908 0.93195 0.76619 0.91312 0.91343 0.91308 0.91262 0.96027
0.96050 0.78310 0.93458 0.86398 0.88773 0.87977 0.88154 0.88605
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16
2 C 0.05 0.41 5.63 37.16 0.21 0.61 16
3 O -0.35 -3.98 8.24 -55.09 -0.45 -4.43 16
4 C 0.10 1.04 2.97 -27.88 -0.08 0.95 16
5 H 0.09 0.68 7.74 -51.93 -0.40 0.28 16
6 C 0.51 6.85 6.94 -10.98 -0.08 6.77 16
7 O -0.52 -9.31 16.51 -14.31 -0.24 -9.55 16
8 N -0.72 -8.45 5.52 -60.29 -0.33 -8.78 16
9 C 0.12 1.71 5.67 -4.04 -0.02 1.69 16
10 C -0.14 -2.09 5.44 -26.73 -0.15 -2.23 16
11 C 0.16 3.13 6.26 -4.04 -0.03 3.11 16
12 N -0.73 -18.74 5.60 -59.90 -0.34 -19.08 16
13 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16
14 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16
15 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16
16 N -0.94 -28.37 13.06 55.49 0.72 -27.65 16
17 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16
18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
21 C -0.19 -1.56 5.76 -90.62 -0.52 -2.08 16
22 C -0.17 -1.30 9.56 -26.73 -0.26 -1.55 16
23 C -0.16 -1.56 9.86 -26.73 -0.26 -1.82 16
24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.05 0.33 7.55 -51.93 -0.39 -0.06 16
28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
29 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16
30 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16
31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
34 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16
35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
36 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16
37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
38 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.10 0.84 6.22 -51.93 -0.32 0.51 16
41 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16
42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 351.44 15.07 5.30 5.30
Total: -1.00 -34.14 351.44 -8.65 -42.79
By element:
Atomic # 1 Polarization: 13.80 SS G_CDS: -7.24 Total: 6.56 kcal
Atomic # 6 Polarization: -1.65 SS G_CDS: -1.05 Total: -2.70 kcal
Atomic # 7 Polarization: -55.57 SS G_CDS: 0.06 Total: -55.51 kcal
Atomic # 8 Polarization: -13.28 SS G_CDS: -0.69 Total: -13.97 kcal
Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -34.14 -8.65 -42.79 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001158131774.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.115 kcal
(2) G-P(sol) polarization free energy of solvation -34.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds