Wall clock time and date at job start Mon Mar 30 2020 01:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42895 * 113.99811 * 185.12471 * 3 2 1 5 5 H 1.08997 * 109.47487 * 337.30342 * 4 3 2 6 6 C 1.50700 * 109.47161 * 217.30697 * 4 3 2 7 7 O 1.21284 * 119.99921 * 354.99651 * 6 4 3 8 8 N 1.34779 * 120.00171 * 175.00009 * 6 4 3 9 9 C 1.46502 * 119.99886 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.46988 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47290 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.47176 * 179.97438 * 11 10 9 13 13 C 1.36940 * 119.99578 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00197 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99514 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00171 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99570 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47393 * 60.00005 * 17 15 13 19 19 H 1.48504 * 109.46891 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47328 * 299.99833 * 17 15 13 21 21 C 1.53001 * 109.47399 * 97.30602 * 4 3 2 22 22 C 1.53004 * 117.51569 * 347.00030 * 21 4 3 23 23 C 1.52996 * 60.00001 * 107.48034 * 22 21 4 24 24 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 25 25 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 0.97003 * 119.99812 * 0.02562 * 8 6 4 30 30 H 1.09008 * 109.46805 * 300.00096 * 9 8 6 31 31 H 1.08998 * 109.47123 * 59.99807 * 9 8 6 32 32 H 1.08997 * 109.47421 * 300.00211 * 10 9 8 33 33 H 1.08998 * 109.47365 * 59.99932 * 10 9 8 34 34 H 1.09008 * 109.46536 * 300.00093 * 11 10 9 35 35 H 1.08998 * 109.47090 * 59.99619 * 11 10 9 36 36 H 0.96992 * 120.00087 * 359.97438 * 12 11 10 37 37 H 0.97000 * 120.00125 * 180.02562 * 16 15 13 38 38 H 1.09003 * 115.55126 * 201.29423 * 21 4 3 39 39 H 1.09002 * 117.49133 * 214.97007 * 22 21 4 40 40 H 1.08997 * 117.50016 * 359.97438 * 22 21 4 41 41 H 1.09000 * 117.49658 * 252.50667 * 23 22 21 42 42 H 1.08997 * 117.50320 * 107.49270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1166 5 1 3.8937 0.5345 0.2142 6 6 3.9101 2.6024 0.7411 7 8 3.1107 3.3099 1.3169 8 7 5.2313 2.8363 0.8685 9 6 5.7018 3.9455 1.7019 10 6 7.2309 3.9905 1.6750 11 6 7.7224 5.1485 2.5459 12 7 9.1865 5.1912 2.5207 13 6 9.8558 6.1514 3.2318 14 1 9.3042 6.8768 3.8114 15 6 11.2431 6.1915 3.2083 16 7 11.9153 5.3072 2.5023 17 14 12.1560 7.5007 4.1787 18 1 11.8253 7.3691 5.6204 19 1 13.6187 7.3276 3.9891 20 1 11.7500 8.8461 3.6986 21 6 3.7980 1.7280 -1.5766 22 6 2.7105 1.5195 -2.6325 23 6 3.1542 2.9357 -2.2607 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8705 2.2707 0.4076 30 1 5.3041 4.8841 1.3158 31 1 5.3601 3.8003 2.7267 32 1 7.6289 3.0520 2.0607 33 1 7.5722 4.1359 0.6501 34 1 7.3243 6.0873 2.1605 35 1 7.3811 5.0027 3.5708 36 1 9.6818 4.5395 2.0004 37 1 12.8847 5.3350 2.4861 38 1 4.8226 1.4797 -1.8535 39 1 3.0198 1.1340 -3.6040 40 1 1.7299 1.1921 -2.2872 41 1 2.4654 3.5403 -1.6708 42 1 3.7553 3.4820 -2.9876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158131774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:35 Heat of formation + Delta-G solvation = -55.903425 kcal Electronic energy + Delta-G solvation = -20385.461222 eV Core-core repulsion = 17173.595999 eV Total energy + Delta-G solvation = -3211.865224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34238 -38.35817 -36.32924 -35.95396 -34.31290 -32.09571 -31.66327 -29.84269 -28.02266 -25.02685 -23.33681 -22.74838 -22.46542 -21.61862 -21.15410 -20.01374 -17.61759 -17.16602 -16.92250 -16.72406 -15.65393 -15.49540 -15.22048 -14.78306 -14.49490 -14.11015 -13.82624 -13.27139 -13.06585 -12.91593 -12.82823 -12.58816 -12.34593 -11.79086 -11.66504 -11.61593 -11.48006 -10.98933 -10.90730 -10.87192 -10.75279 -10.67035 -10.60741 -10.11067 -10.06615 -9.72958 -9.45350 -9.03604 -8.87548 -6.93775 -5.77340 -3.06240 2.54516 2.74446 3.39873 3.44812 3.48715 3.50039 3.74734 4.29262 4.53389 4.55220 4.59302 4.72246 4.81679 4.91181 4.96278 5.03100 5.05676 5.15418 5.31814 5.33885 5.42798 5.56788 5.57411 5.62390 5.63508 5.77280 5.87221 5.97414 5.99427 6.07066 6.19054 6.32095 6.44958 6.77707 6.79823 6.83400 7.47635 7.69718 8.19792 8.41760 9.52755 10.09844 10.44589 11.45655 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.042233 B = 0.002647 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.822143 B =10576.336922 C =10847.373958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.104 3.896 5 H 0.090 0.910 6 C 0.515 3.485 7 O -0.522 6.522 8 N -0.723 5.723 9 C 0.124 3.876 10 C -0.137 4.137 11 C 0.156 3.844 12 N -0.734 5.734 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.185 4.185 22 C -0.165 4.165 23 C -0.164 4.164 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.400 0.600 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.383 0.617 37 H 0.256 0.744 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.936 -13.575 -10.182 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.042 3.958 5 H 0.108 0.892 6 C 0.299 3.701 7 O -0.397 6.397 8 N -0.376 5.376 9 C 0.001 3.999 10 C -0.175 4.175 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.204 4.204 22 C -0.202 4.202 23 C -0.201 4.201 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.234 0.766 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.623 -12.745 -9.621 26.082 hybrid contribution 1.358 -0.054 0.090 1.362 sum -19.264 -12.799 -9.531 25.015 Atomic orbital electron populations 1.21732 0.93421 1.02230 1.03404 1.22650 0.95931 0.83610 1.00273 1.88036 1.18611 1.26338 1.94087 1.21329 0.83825 0.97622 0.93049 0.89215 1.20298 0.82599 0.85684 0.81500 1.90722 1.54298 1.48188 1.46530 1.45971 1.06559 1.34100 1.51015 1.21362 0.94695 0.89039 0.94853 1.21940 0.92741 1.01029 1.01810 1.20522 0.86361 0.94288 0.96026 1.42330 0.99477 1.37246 1.58752 1.19207 0.89266 1.06895 1.21771 0.91137 1.24755 0.96355 0.99256 1.00719 1.69647 1.06525 1.37329 1.44894 0.86235 0.78786 0.81277 0.79705 1.21226 1.21674 1.21213 1.22713 0.99028 1.06454 0.92181 1.22945 0.99083 1.00092 0.98115 1.22918 1.03345 0.90940 1.02887 0.91825 0.91017 0.91592 0.92908 0.93195 0.76619 0.91312 0.91343 0.91308 0.91262 0.96027 0.96050 0.78310 0.93458 0.86398 0.88773 0.87977 0.88154 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.41 5.63 37.16 0.21 0.61 16 3 O -0.35 -3.98 8.24 -55.09 -0.45 -4.43 16 4 C 0.10 1.04 2.97 -27.88 -0.08 0.95 16 5 H 0.09 0.68 7.74 -51.93 -0.40 0.28 16 6 C 0.51 6.85 6.94 -10.98 -0.08 6.77 16 7 O -0.52 -9.31 16.51 -14.31 -0.24 -9.55 16 8 N -0.72 -8.45 5.52 -60.29 -0.33 -8.78 16 9 C 0.12 1.71 5.67 -4.04 -0.02 1.69 16 10 C -0.14 -2.09 5.44 -26.73 -0.15 -2.23 16 11 C 0.16 3.13 6.26 -4.04 -0.03 3.11 16 12 N -0.73 -18.74 5.60 -59.90 -0.34 -19.08 16 13 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 14 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 15 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 16 N -0.94 -28.37 13.06 55.49 0.72 -27.65 16 17 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.19 -1.56 5.76 -90.62 -0.52 -2.08 16 22 C -0.17 -1.30 9.56 -26.73 -0.26 -1.55 16 23 C -0.16 -1.56 9.86 -26.73 -0.26 -1.82 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.33 7.55 -51.93 -0.39 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16 30 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.84 6.22 -51.93 -0.32 0.51 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -34.14 351.44 -8.65 -42.79 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.24 Total: 6.56 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.05 Total: -2.70 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.06 Total: -55.51 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.69 Total: -13.97 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.14 -8.65 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158131774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.115 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds