Wall clock time and date at job start Mon Mar 30 2020 01:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42895 * 113.99811 * 185.12471 * 3 2 1 5 5 H 1.08997 * 109.47487 * 337.30342 * 4 3 2 6 6 C 1.50700 * 109.47161 * 217.30697 * 4 3 2 7 7 O 1.21284 * 119.99921 * 354.99651 * 6 4 3 8 8 N 1.34779 * 120.00171 * 175.00009 * 6 4 3 9 9 C 1.46502 * 119.99886 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.46988 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47290 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.47176 * 179.97438 * 11 10 9 13 13 C 1.36940 * 119.99578 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00197 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99514 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00171 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99570 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47393 * 60.00005 * 17 15 13 19 19 H 1.48504 * 109.46891 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47328 * 299.99833 * 17 15 13 21 21 C 1.53001 * 109.47399 * 97.30602 * 4 3 2 22 22 C 1.53004 * 117.51569 * 347.00030 * 21 4 3 23 23 C 1.52996 * 60.00001 * 107.48034 * 22 21 4 24 24 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 25 25 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 0.97003 * 119.99812 * 0.02562 * 8 6 4 30 30 H 1.09008 * 109.46805 * 300.00096 * 9 8 6 31 31 H 1.08998 * 109.47123 * 59.99807 * 9 8 6 32 32 H 1.08997 * 109.47421 * 300.00211 * 10 9 8 33 33 H 1.08998 * 109.47365 * 59.99932 * 10 9 8 34 34 H 1.09008 * 109.46536 * 300.00093 * 11 10 9 35 35 H 1.08998 * 109.47090 * 59.99619 * 11 10 9 36 36 H 0.96992 * 120.00087 * 359.97438 * 12 11 10 37 37 H 0.97000 * 120.00125 * 180.02562 * 16 15 13 38 38 H 1.09003 * 115.55126 * 201.29423 * 21 4 3 39 39 H 1.09002 * 117.49133 * 214.97007 * 22 21 4 40 40 H 1.08997 * 117.50016 * 359.97438 * 22 21 4 41 41 H 1.09000 * 117.49658 * 252.50667 * 23 22 21 42 42 H 1.08997 * 117.50320 * 107.49270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1166 5 1 3.8937 0.5345 0.2142 6 6 3.9101 2.6024 0.7411 7 8 3.1107 3.3099 1.3169 8 7 5.2313 2.8363 0.8685 9 6 5.7018 3.9455 1.7019 10 6 7.2309 3.9905 1.6750 11 6 7.7224 5.1485 2.5459 12 7 9.1865 5.1912 2.5207 13 6 9.8558 6.1514 3.2318 14 1 9.3042 6.8768 3.8114 15 6 11.2431 6.1915 3.2083 16 7 11.9153 5.3072 2.5023 17 14 12.1560 7.5007 4.1787 18 1 11.8253 7.3691 5.6204 19 1 13.6187 7.3276 3.9891 20 1 11.7500 8.8461 3.6986 21 6 3.7980 1.7280 -1.5766 22 6 2.7105 1.5195 -2.6325 23 6 3.1542 2.9357 -2.2607 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8705 2.2707 0.4076 30 1 5.3041 4.8841 1.3158 31 1 5.3601 3.8003 2.7267 32 1 7.6289 3.0520 2.0607 33 1 7.5722 4.1359 0.6501 34 1 7.3243 6.0873 2.1605 35 1 7.3811 5.0027 3.5708 36 1 9.6818 4.5395 2.0004 37 1 12.8847 5.3350 2.4861 38 1 4.8226 1.4797 -1.8535 39 1 3.0198 1.1340 -3.6040 40 1 1.7299 1.1921 -2.2872 41 1 2.4654 3.5403 -1.6708 42 1 3.7553 3.4820 -2.9876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158131774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:34 Heat of formation + Delta-G solvation = -79.072482 kcal Electronic energy + Delta-G solvation = -20386.465908 eV Core-core repulsion = 17173.595999 eV Total energy + Delta-G solvation = -3212.869909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26550 -39.25608 -37.47302 -36.99683 -35.88440 -33.78449 -32.39326 -31.41629 -29.04988 -26.68751 -24.41557 -23.93583 -23.16533 -22.59392 -22.47070 -20.98237 -19.21409 -18.30947 -17.91480 -17.59806 -16.86084 -16.68627 -16.38676 -15.83470 -15.62083 -15.32400 -15.28341 -14.88623 -14.59792 -13.90329 -13.59325 -13.42988 -13.30795 -13.13182 -12.79156 -12.61640 -12.44483 -12.43378 -12.31459 -12.13330 -12.07653 -12.04557 -11.80555 -11.63883 -11.32726 -10.94055 -10.78396 -10.40062 -10.13183 -9.02349 -7.96836 -5.26024 1.47637 1.50696 1.53674 1.56833 1.84320 2.55710 2.71814 2.98005 3.36795 3.60045 3.74005 3.77201 3.87344 4.08070 4.16539 4.19939 4.22761 4.28857 4.33898 4.42679 4.46294 4.50545 4.72188 4.72660 4.79336 4.82733 4.87434 4.98945 5.03106 5.17825 5.25395 5.27360 5.31270 5.32859 5.39790 5.48298 6.10618 6.25967 6.55254 7.21057 7.32434 8.06930 8.31237 9.26426 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.042233 B = 0.002647 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.822143 B =10576.336922 C =10847.373958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.382 6.382 4 C 0.105 3.895 5 H 0.121 0.879 6 C 0.511 3.489 7 O -0.576 6.576 8 N -0.710 5.710 9 C 0.134 3.866 10 C -0.116 4.116 11 C 0.152 3.848 12 N -0.746 5.746 13 C -0.251 4.251 14 H 0.074 0.926 15 C -0.075 4.075 16 N -0.968 5.968 17 Si 0.975 3.025 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.278 1.278 21 C -0.179 4.179 22 C -0.149 4.149 23 C -0.185 4.185 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.417 0.583 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.376 0.624 37 H 0.253 0.747 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.925 -14.850 -10.926 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.301 6.301 4 C 0.044 3.956 5 H 0.138 0.862 6 C 0.298 3.702 7 O -0.455 6.455 8 N -0.363 5.363 9 C 0.010 3.990 10 C -0.155 4.155 11 C 0.025 3.975 12 N -0.389 5.389 13 C -0.383 4.383 14 H 0.092 0.908 15 C -0.267 4.267 16 N -0.618 5.618 17 Si 0.803 3.197 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.204 1.204 21 C -0.198 4.198 22 C -0.186 4.186 23 C -0.222 4.222 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.208 0.792 37 H 0.062 0.938 38 H 0.161 0.839 39 H 0.134 0.866 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.629 -14.041 -10.377 27.026 hybrid contribution 1.263 0.337 0.328 1.348 sum -19.366 -13.704 -10.049 25.765 Atomic orbital electron populations 1.21763 0.93066 1.03452 1.02428 1.22869 0.96324 0.82342 1.01497 1.88021 1.19277 1.28531 1.94271 1.21401 0.83743 0.97138 0.93305 0.86166 1.21015 0.82314 0.85933 0.80980 1.90696 1.55638 1.50290 1.48827 1.45795 1.06703 1.33479 1.50348 1.21078 0.93531 0.89534 0.94868 1.21687 0.93344 0.99311 1.01115 1.20677 0.83602 0.96240 0.97022 1.42523 1.01564 1.36538 1.58316 1.19607 0.89876 1.07272 1.21545 0.90822 1.25587 0.97276 1.01624 1.02213 1.69793 1.06432 1.39098 1.46514 0.85195 0.77098 0.78850 0.78513 1.20402 1.21881 1.20408 1.22828 1.00457 1.05305 0.91200 1.22998 0.98713 0.98120 0.98767 1.22852 1.03950 0.91738 1.03646 0.92099 0.88666 0.93271 0.90820 0.92661 0.74617 0.92308 0.92114 0.90487 0.90547 0.96156 0.96100 0.79159 0.93848 0.83869 0.86592 0.88457 0.91287 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.05 0.63 5.63 71.98 0.40 1.04 16 3 O -0.38 -8.31 8.24 -129.99 -1.07 -9.38 16 4 C 0.11 1.92 2.97 29.85 0.09 2.01 16 5 H 0.12 1.44 7.74 -2.39 -0.02 1.42 16 6 C 0.51 13.25 6.94 87.66 0.61 13.86 16 7 O -0.58 -20.98 16.51 15.95 0.26 -20.71 16 8 N -0.71 -15.54 5.52 -463.05 -2.55 -18.09 16 9 C 0.13 3.61 5.67 86.38 0.49 4.10 16 10 C -0.12 -3.40 5.44 30.59 0.17 -3.23 16 11 C 0.15 6.00 6.26 86.38 0.54 6.54 16 12 N -0.75 -37.99 5.60 -343.44 -1.92 -39.91 16 13 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 14 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 15 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 16 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 17 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 C -0.18 -2.59 5.76 -10.79 -0.06 -2.66 16 22 C -0.15 -2.00 9.56 30.59 0.29 -1.70 16 23 C -0.18 -3.37 9.86 30.59 0.30 -3.07 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.70 7.55 -2.39 -0.02 0.68 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 29 H 0.42 6.33 8.47 -92.71 -0.79 5.54 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.38 19.91 7.67 -92.71 -0.71 19.20 16 37 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.42 6.22 -2.39 -0.01 1.41 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.22 351.44 1.41 -72.81 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.49 Total: 27.11 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.88 Total: -1.45 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -4.20 Total: -116.60 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.81 Total: -30.09 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -74.22 1.41 -72.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158131774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.262 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds