Wall clock time and date at job start Mon Mar 30 2020 01:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47095 * 2 1 4 4 C 1.42894 * 114.00012 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47009 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99816 * 0.27162 * 5 4 3 7 7 N 1.34771 * 120.00034 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00075 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47223 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47281 * 175.02604 * 9 8 7 11 11 C 1.53005 * 115.54683 * 278.03052 * 10 9 8 12 12 N 1.46496 * 109.47124 * 303.89780 * 11 10 9 13 13 C 1.36938 * 119.99886 * 175.59129 * 12 11 10 14 14 H 1.08000 * 120.00063 * 359.97438 * 13 12 11 15 15 C 1.38818 * 120.00028 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99867 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46858 * 89.99799 * 17 15 13 19 19 H 1.48497 * 109.47046 * 209.99780 * 17 15 13 20 20 H 1.48499 * 109.47122 * 329.99740 * 17 15 13 21 21 C 1.53001 * 117.50111 * 132.32475 * 10 9 8 22 22 C 1.52994 * 117.49977 * 63.70256 * 10 9 8 23 23 H 1.09002 * 109.46880 * 60.00529 * 1 2 3 24 24 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47762 * 300.00275 * 1 2 3 26 26 H 1.09001 * 109.47282 * 239.99847 * 2 1 3 27 27 H 1.09002 * 109.46880 * 119.99471 * 2 1 3 28 28 H 1.09000 * 109.47528 * 60.00076 * 4 3 2 29 29 H 1.08996 * 109.47010 * 299.99481 * 4 3 2 30 30 H 0.97006 * 120.00271 * 359.97438 * 7 5 4 31 31 H 1.09002 * 109.47232 * 299.99666 * 8 7 5 32 32 H 1.09003 * 109.47472 * 60.00195 * 8 7 5 33 33 H 1.09002 * 109.46931 * 295.02334 * 9 8 7 34 34 H 1.08997 * 109.47515 * 55.02127 * 9 8 7 35 35 H 1.08998 * 109.46792 * 63.89921 * 11 10 9 36 36 H 1.08998 * 109.47208 * 183.89622 * 11 10 9 37 37 H 0.97003 * 120.00188 * 355.59557 * 12 11 10 38 38 H 0.96994 * 120.00089 * 180.02562 * 16 15 13 39 39 H 1.08997 * 117.49913 * 359.97438 * 21 10 9 40 40 H 1.09003 * 117.49553 * 145.01850 * 21 10 9 41 41 H 1.09000 * 117.49661 * 214.98203 * 22 10 9 42 42 H 1.08998 * 117.50374 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9608 3.7729 0.0061 7 7 5.1208 3.2664 0.0023 8 6 5.4985 4.6819 0.0023 9 6 7.0237 4.8027 0.0030 10 6 7.4187 6.2756 -0.1220 11 6 7.4128 6.8419 -1.5434 12 7 8.2869 6.0319 -2.3954 13 6 8.3707 6.2949 -3.7367 14 1 7.7920 7.0992 -4.1665 15 6 9.1986 5.5271 -4.5442 16 7 9.9026 4.5460 -4.0207 17 14 9.3133 5.8863 -6.3738 18 1 10.4004 6.8681 -6.6182 19 1 9.6074 4.6292 -7.1075 20 1 8.0234 6.4472 -6.8499 21 6 8.4765 6.8081 0.8467 22 6 7.0113 7.2152 1.0146 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.8340 0.9765 -0.8891 29 1 3.8332 0.9768 0.8908 30 1 5.8075 2.5812 0.0031 31 1 5.0966 5.1652 -0.8882 32 1 5.0949 5.1657 0.8918 33 1 7.4198 4.3982 0.9345 34 1 7.4329 4.2441 -0.8387 35 1 6.3974 6.8196 -1.9391 36 1 7.7735 7.8703 -1.5263 37 1 8.8063 5.3093 -2.0095 38 1 10.4814 4.0097 -4.5848 39 1 8.8907 6.1093 1.5734 40 1 9.1686 7.5620 0.4714 41 1 6.7394 8.2370 0.7498 42 1 6.4615 6.7843 1.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163250440.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:22 Heat of formation + Delta-G solvation = -56.355833 kcal Electronic energy + Delta-G solvation = -20458.098581 eV Core-core repulsion = 17246.213740 eV Total energy + Delta-G solvation = -3211.884841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77126 -38.37489 -37.66811 -34.74684 -33.93419 -31.82805 -30.80482 -30.24449 -27.49771 -25.89495 -23.30103 -23.00695 -22.71257 -21.80101 -20.63583 -18.54701 -17.22231 -17.03894 -16.94479 -16.64185 -15.65235 -15.41418 -14.97086 -14.44594 -14.40911 -14.13692 -13.64066 -13.16085 -12.96820 -12.93957 -12.71431 -12.61725 -12.31653 -11.86165 -11.67036 -11.50031 -11.39895 -11.12134 -10.93170 -10.83937 -10.57649 -10.15010 -9.93085 -9.92354 -9.77140 -9.61459 -9.32159 -8.97281 -8.83478 -6.89971 -5.76385 -3.03889 2.64570 2.76575 3.44100 3.49575 3.51030 3.84492 4.07133 4.61411 4.65776 4.75581 4.87803 4.98875 5.02836 5.04130 5.07949 5.10560 5.16777 5.34250 5.38944 5.54638 5.60973 5.64028 5.70021 5.78255 5.86519 5.91862 6.16931 6.19940 6.21935 6.43615 6.45845 6.47368 6.60869 6.77956 6.83672 6.84552 7.53260 7.71346 8.26167 8.43065 9.54690 10.12754 10.48485 11.46606 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003861 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.331469 B = 7249.735955 C = 8666.113396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.511 3.489 6 O -0.523 6.523 7 N -0.725 5.725 8 C 0.127 3.873 9 C -0.092 4.092 10 C -0.118 4.118 11 C 0.187 3.813 12 N -0.727 5.727 13 C -0.236 4.236 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.166 4.166 22 C -0.178 4.178 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.401 0.599 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 -8.158 12.597 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.296 3.704 6 O -0.398 6.398 7 N -0.379 5.379 8 C 0.005 3.995 9 C -0.130 4.130 10 C -0.119 4.119 11 C 0.060 3.940 12 N -0.372 5.372 13 C -0.368 4.368 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.203 4.203 22 C -0.215 4.215 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.580 -7.292 12.426 18.484 hybrid contribution 0.946 -0.676 -0.940 1.495 sum -10.634 -7.968 11.486 17.564 Atomic orbital electron populations 1.21730 0.93445 1.02172 1.03489 1.22548 0.95971 0.83449 1.00200 1.88024 1.18593 1.26273 1.95434 1.22199 0.83894 0.94869 1.02616 1.20190 0.82801 0.90462 0.76953 1.90730 1.49373 1.51777 1.47915 1.45920 1.06773 1.09480 1.75710 1.21357 0.95417 0.80283 1.02485 1.21267 0.93621 0.95239 1.02837 1.21565 1.03627 0.93648 0.93093 1.20182 0.94336 0.93451 0.86058 1.42304 1.51421 1.38494 1.04962 1.19244 1.20735 1.12468 0.84323 0.91256 1.24709 0.99851 0.98404 0.98035 1.69652 1.31780 1.22298 1.34615 0.86201 0.77677 0.76989 0.85426 1.21780 1.21814 1.20768 1.22995 0.91800 1.03556 1.01983 1.22965 0.98200 1.00081 1.00284 0.91630 0.91017 0.91732 0.93099 0.93253 0.90088 0.90387 0.76506 0.90871 0.91775 0.91985 0.89162 0.95605 0.96442 0.78158 0.93609 0.89324 0.88696 0.88932 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.48 6.66 37.16 0.25 0.73 16 3 O -0.36 -4.69 9.88 -55.14 -0.54 -5.24 16 4 C 0.04 0.47 6.42 36.01 0.23 0.70 16 5 C 0.51 7.38 7.91 -10.99 -0.09 7.30 16 6 O -0.52 -10.02 16.50 -14.36 -0.24 -10.26 16 7 N -0.73 -9.23 5.56 -60.29 -0.33 -9.57 16 8 C 0.13 1.85 5.49 -4.04 -0.02 1.83 16 9 C -0.09 -1.34 5.20 -26.73 -0.14 -1.48 16 10 C -0.12 -1.89 1.65 -154.51 -0.25 -2.14 16 11 C 0.19 3.80 6.15 -4.04 -0.02 3.77 16 12 N -0.73 -18.13 5.23 -59.91 -0.31 -18.44 16 13 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 17 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.17 -2.39 9.87 -26.73 -0.26 -2.66 16 22 C -0.18 -2.37 9.57 -26.74 -0.26 -2.63 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 31 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16 32 H 0.06 0.91 7.72 -51.93 -0.40 0.51 16 33 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.09 1.54 6.94 -51.93 -0.36 1.18 16 35 H 0.03 0.55 7.96 -51.93 -0.41 0.13 16 36 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 37 H 0.38 9.95 6.80 -40.82 -0.28 9.67 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.09 1.14 8.07 -51.93 -0.42 0.73 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -34.05 353.05 -8.06 -42.11 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.22 Total: 8.38 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.43 Total: -2.64 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.08 Total: -55.12 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.78 Total: -15.49 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.05 -8.06 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163250440.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.241 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds