Wall clock time and date at job start Mon Mar 30 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47095 * 2 1 4 4 C 1.42894 * 114.00012 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47009 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99816 * 0.27162 * 5 4 3 7 7 N 1.34771 * 120.00034 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00075 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47223 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47281 * 175.02604 * 9 8 7 11 11 C 1.53005 * 115.54683 * 278.03052 * 10 9 8 12 12 N 1.46496 * 109.47124 * 303.89780 * 11 10 9 13 13 C 1.36938 * 119.99886 * 175.59129 * 12 11 10 14 14 H 1.08000 * 120.00063 * 359.97438 * 13 12 11 15 15 C 1.38818 * 120.00028 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99867 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46858 * 89.99799 * 17 15 13 19 19 H 1.48497 * 109.47046 * 209.99780 * 17 15 13 20 20 H 1.48499 * 109.47122 * 329.99740 * 17 15 13 21 21 C 1.53001 * 117.50111 * 132.32475 * 10 9 8 22 22 C 1.52994 * 117.49977 * 63.70256 * 10 9 8 23 23 H 1.09002 * 109.46880 * 60.00529 * 1 2 3 24 24 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47762 * 300.00275 * 1 2 3 26 26 H 1.09001 * 109.47282 * 239.99847 * 2 1 3 27 27 H 1.09002 * 109.46880 * 119.99471 * 2 1 3 28 28 H 1.09000 * 109.47528 * 60.00076 * 4 3 2 29 29 H 1.08996 * 109.47010 * 299.99481 * 4 3 2 30 30 H 0.97006 * 120.00271 * 359.97438 * 7 5 4 31 31 H 1.09002 * 109.47232 * 299.99666 * 8 7 5 32 32 H 1.09003 * 109.47472 * 60.00195 * 8 7 5 33 33 H 1.09002 * 109.46931 * 295.02334 * 9 8 7 34 34 H 1.08997 * 109.47515 * 55.02127 * 9 8 7 35 35 H 1.08998 * 109.46792 * 63.89921 * 11 10 9 36 36 H 1.08998 * 109.47208 * 183.89622 * 11 10 9 37 37 H 0.97003 * 120.00188 * 355.59557 * 12 11 10 38 38 H 0.96994 * 120.00089 * 180.02562 * 16 15 13 39 39 H 1.08997 * 117.49913 * 359.97438 * 21 10 9 40 40 H 1.09003 * 117.49553 * 145.01850 * 21 10 9 41 41 H 1.09000 * 117.49661 * 214.98203 * 22 10 9 42 42 H 1.08998 * 117.50374 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9608 3.7729 0.0061 7 7 5.1208 3.2664 0.0023 8 6 5.4985 4.6819 0.0023 9 6 7.0237 4.8027 0.0030 10 6 7.4187 6.2756 -0.1220 11 6 7.4128 6.8419 -1.5434 12 7 8.2869 6.0319 -2.3954 13 6 8.3707 6.2949 -3.7367 14 1 7.7920 7.0992 -4.1665 15 6 9.1986 5.5271 -4.5442 16 7 9.9026 4.5460 -4.0207 17 14 9.3133 5.8863 -6.3738 18 1 10.4004 6.8681 -6.6182 19 1 9.6074 4.6292 -7.1075 20 1 8.0234 6.4472 -6.8499 21 6 8.4765 6.8081 0.8467 22 6 7.0113 7.2152 1.0146 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.8340 0.9765 -0.8891 29 1 3.8332 0.9768 0.8908 30 1 5.8075 2.5812 0.0031 31 1 5.0966 5.1652 -0.8882 32 1 5.0949 5.1657 0.8918 33 1 7.4198 4.3982 0.9345 34 1 7.4329 4.2441 -0.8387 35 1 6.3974 6.8196 -1.9391 36 1 7.7735 7.8703 -1.5263 37 1 8.8063 5.3093 -2.0095 38 1 10.4814 4.0097 -4.5848 39 1 8.8907 6.1093 1.5734 40 1 9.1686 7.5620 0.4714 41 1 6.7394 8.2370 0.7498 42 1 6.4615 6.7843 1.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163250440.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:21 Heat of formation + Delta-G solvation = -79.838226 kcal Electronic energy + Delta-G solvation = -20459.116854 eV Core-core repulsion = 17246.213740 eV Total energy + Delta-G solvation = -3212.903114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88369 -39.59320 -38.58901 -36.09098 -35.73715 -32.79440 -32.55359 -31.35740 -28.48943 -27.68422 -24.63284 -24.43885 -23.67078 -22.97410 -21.75821 -19.96284 -19.04797 -18.12341 -17.91032 -17.46790 -16.87063 -16.61122 -16.46134 -15.99615 -15.59965 -15.30404 -15.04863 -14.80781 -14.34529 -13.95674 -13.88829 -13.83219 -13.24288 -13.15589 -13.00598 -12.79774 -12.56172 -12.31563 -12.27742 -12.17774 -12.11412 -11.93390 -11.83335 -11.10775 -10.96336 -10.87279 -10.67138 -10.52996 -10.12622 -8.96966 -7.94847 -5.22054 1.46780 1.47618 1.54732 1.56178 1.83070 2.54471 2.88784 3.04724 3.38329 3.71173 3.84742 3.85924 3.99199 4.09892 4.16076 4.17684 4.26942 4.29968 4.35587 4.41621 4.48662 4.50830 4.65015 4.82888 4.84749 4.94535 4.98580 5.02973 5.08462 5.19101 5.26416 5.27646 5.34494 5.38778 5.41773 5.49328 6.10258 6.27994 6.54317 7.20514 7.35272 8.10833 8.37488 9.28316 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003861 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.331469 B = 7249.735955 C = 8666.113396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.048 3.952 5 C 0.504 3.496 6 O -0.579 6.579 7 N -0.714 5.714 8 C 0.135 3.865 9 C -0.077 4.077 10 C -0.141 4.141 11 C 0.187 3.813 12 N -0.735 5.735 13 C -0.247 4.247 14 H 0.068 0.932 15 C -0.070 4.070 16 N -0.964 5.964 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.275 1.275 21 C -0.162 4.162 22 C -0.153 4.153 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.417 0.583 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.013 0.987 37 H 0.378 0.622 38 H 0.252 0.748 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -9.177 13.741 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.324 6.324 4 C -0.031 4.031 5 C 0.291 3.709 6 O -0.459 6.459 7 N -0.368 5.368 8 C 0.011 3.989 9 C -0.115 4.115 10 C -0.142 4.142 11 C 0.061 3.939 12 N -0.378 5.378 13 C -0.379 4.379 14 H 0.086 0.914 15 C -0.262 4.262 16 N -0.614 5.614 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.219 1.219 20 H -0.200 1.200 21 C -0.199 4.199 22 C -0.191 4.191 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.254 0.746 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.211 0.789 38 H 0.061 0.939 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.520 -8.316 13.584 19.657 hybrid contribution 0.903 -0.323 -1.273 1.594 sum -10.617 -8.639 12.311 18.410 Atomic orbital electron populations 1.21783 0.93288 1.03502 1.02375 1.22797 0.96225 0.81957 1.01807 1.87982 1.19717 1.28856 1.95803 1.22302 0.83475 0.92026 1.05325 1.20999 0.82443 0.91917 0.75504 1.90699 1.50866 1.53648 1.50649 1.45830 1.07027 1.09237 1.74689 1.21161 0.95331 0.81243 1.01130 1.21109 0.93213 0.94086 1.03067 1.21412 1.06631 0.94954 0.91215 1.20223 0.92518 0.92853 0.88316 1.42428 1.51924 1.38804 1.04599 1.19587 1.20238 1.12122 0.85932 0.91394 1.25463 1.00061 0.98632 1.02087 1.69787 1.32578 1.23247 1.35834 0.85211 0.77782 0.76632 0.80561 1.21419 1.21869 1.19982 1.23058 0.92084 1.03412 1.01312 1.23049 0.97510 0.99555 0.98943 0.93028 0.88442 0.92569 0.91832 0.91143 0.87916 0.86715 0.74612 0.94352 0.91045 0.88923 0.92005 0.96826 0.96868 0.78916 0.93942 0.87191 0.89909 0.88645 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.40 -9.99 9.88 -129.94 -1.28 -11.28 16 4 C 0.05 0.93 6.42 71.24 0.46 1.39 16 5 C 0.50 14.28 7.91 87.66 0.69 14.97 16 6 O -0.58 -22.67 16.50 15.99 0.26 -22.40 16 7 N -0.71 -17.46 5.56 -463.05 -2.57 -20.03 16 8 C 0.14 3.86 5.49 86.38 0.47 4.34 16 9 C -0.08 -2.16 5.20 30.59 0.16 -2.00 16 10 C -0.14 -4.38 1.65 -52.18 -0.09 -4.46 16 11 C 0.19 7.72 6.15 86.38 0.53 8.25 16 12 N -0.73 -37.28 5.23 -343.45 -1.80 -39.07 16 13 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 14 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 15 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 16 N -0.96 -57.98 13.06 21.65 0.28 -57.70 16 17 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 21 C -0.16 -4.32 9.87 30.59 0.30 -4.02 16 22 C -0.15 -3.73 9.57 30.59 0.29 -3.43 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.42 7.44 8.47 -92.70 -0.79 6.66 16 31 H 0.04 1.36 7.96 -2.39 -0.02 1.34 16 32 H 0.07 1.95 7.72 -2.39 -0.02 1.93 16 33 H 0.09 2.04 7.93 -2.39 -0.02 2.02 16 34 H 0.06 2.11 6.94 -2.39 -0.02 2.09 16 35 H 0.01 0.60 7.96 -2.39 -0.02 0.58 16 36 H 0.01 0.56 8.10 -2.39 -0.02 0.54 16 37 H 0.38 19.94 6.80 -92.71 -0.63 19.31 16 38 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.11 2.48 8.07 -2.39 -0.02 2.46 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.27 16 42 H 0.11 2.28 7.90 -2.39 -0.02 2.26 16 Total: -1.00 -75.33 353.05 1.86 -73.47 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -0.41 Total: 30.46 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.35 Total: -1.90 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -4.08 Total: -116.80 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.02 Total: -33.68 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -75.33 1.86 -73.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163250440.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.372 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds