Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47298 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99449 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.47420 * 125.64798 * 0.02790 * 8 6 5 10 10 C 1.54910 * 104.83619 * 204.08806 * 9 8 6 11 11 C 1.55156 * 101.57943 * 322.99717 * 10 9 8 12 12 H 1.09011 * 110.71562 * 277.13165 * 11 10 9 13 13 N 1.46499 * 110.72088 * 153.86684 * 11 10 9 14 14 C 1.36934 * 120.00627 * 86.44943 * 13 11 10 15 15 H 1.08006 * 119.99786 * 359.97438 * 14 13 11 16 16 C 1.38807 * 120.00047 * 180.02562 * 14 13 11 17 17 N 1.31625 * 119.99789 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00191 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46698 * 90.00386 * 18 16 14 20 20 H 1.48503 * 109.47024 * 209.99883 * 18 16 14 21 21 H 1.48497 * 109.47021 * 330.00048 * 18 16 14 22 22 C 1.47029 * 125.64918 * 179.71969 * 8 6 5 23 23 H 1.08994 * 109.88067 * 298.39521 * 22 8 6 24 24 C 1.52995 * 109.87863 * 59.56076 * 22 8 6 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 31 31 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 32 32 H 1.08997 * 109.47286 * 300.00017 * 5 4 3 33 33 H 1.09008 * 109.47201 * 60.00236 * 5 4 3 34 34 H 1.08998 * 110.36872 * 322.93107 * 9 8 6 35 35 H 1.09006 * 110.36484 * 85.14315 * 9 8 6 36 36 H 1.09001 * 111.00003 * 81.06611 * 10 9 8 37 37 H 1.08994 * 111.00641 * 204.87792 * 10 9 8 38 38 H 0.97005 * 119.99748 * 266.44538 * 13 11 10 39 39 H 0.97000 * 119.99510 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47502 * 58.54921 * 24 22 8 41 41 H 1.09004 * 109.46476 * 178.54356 * 24 22 8 42 42 H 1.08999 * 109.47317 * 298.54338 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3275 3.0577 0.0011 7 8 6.0149 2.0585 0.0020 8 7 5.9070 4.2744 0.0003 9 6 5.1950 5.5652 -0.0013 10 6 6.2007 6.5723 -0.6129 11 6 7.5447 6.0654 -0.0264 12 1 7.6967 6.4536 0.9808 13 7 8.6625 6.4328 -0.8991 14 6 9.2645 7.6552 -0.7630 15 1 8.9149 8.3486 -0.0123 16 6 10.3233 8.0034 -1.5903 17 7 10.9016 9.1785 -1.4597 18 14 10.9274 6.8042 -2.8890 19 1 10.1870 7.0323 -4.1559 20 1 12.3794 7.0143 -3.1195 21 1 10.6962 5.4130 -2.4239 22 6 7.3541 4.5343 0.0071 23 1 7.8003 4.1230 0.9126 24 6 8.0016 3.9047 -1.2278 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8332 0.9769 0.8908 31 1 3.8340 0.9766 -0.8891 32 1 3.4228 3.4215 -0.8905 33 1 3.4220 3.4226 0.8895 34 1 4.2981 5.5030 -0.6176 35 1 4.9355 5.8565 1.0166 36 1 6.2016 6.5112 -1.7012 37 1 5.9871 7.5882 -0.2809 38 1 8.9763 5.8101 -1.5735 39 1 11.6417 9.4217 -2.0376 40 1 7.5451 4.3171 -2.1276 41 1 9.0695 4.1234 -1.2294 42 1 7.8517 2.8253 -1.2063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178327946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = -66.328767 kcal Electronic energy + Delta-G solvation = -21105.320906 eV Core-core repulsion = 17893.003606 eV Total energy + Delta-G solvation = -3212.317300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21106 -38.39095 -37.52926 -34.36746 -32.81507 -31.77568 -30.89858 -30.47392 -29.12969 -25.50827 -24.41103 -23.07414 -22.86150 -22.29325 -19.59577 -18.73919 -17.98920 -17.42321 -16.70376 -16.23303 -15.85082 -15.33286 -14.91746 -14.52155 -14.26583 -14.06806 -13.64407 -13.36529 -12.96597 -12.77111 -12.60925 -12.35538 -12.16332 -12.02395 -11.92658 -11.70330 -11.43095 -11.35187 -11.29628 -11.17644 -10.91654 -10.57864 -10.35240 -10.09279 -9.84578 -9.74985 -9.55730 -9.00179 -8.53205 -7.35858 -5.83861 -3.20744 2.66126 2.83555 3.32885 3.35792 3.41742 3.58344 4.52881 4.53972 4.72640 4.74637 4.83432 4.92017 4.95563 5.06866 5.14516 5.17045 5.28126 5.38596 5.40264 5.49928 5.51889 5.55549 5.59131 5.64336 5.67051 5.79031 5.83420 5.89294 6.00702 6.15701 6.35791 6.48360 6.54032 6.55523 6.81964 6.92749 7.63285 7.91287 8.20468 8.35001 9.12319 9.84604 10.03368 11.34000 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043512 B = 0.003441 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.339034 B = 8134.439956 C = 8449.581454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.134 4.134 6 C 0.531 3.469 7 O -0.547 6.547 8 N -0.608 5.608 9 C 0.096 3.904 10 C -0.152 4.152 11 C 0.179 3.821 12 H 0.072 0.928 13 N -0.742 5.742 14 C -0.248 4.248 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.930 5.930 18 Si 0.879 3.121 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.276 1.276 22 C 0.126 3.874 23 H 0.075 0.925 24 C -0.164 4.164 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.368 0.632 39 H 0.260 0.740 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.641 -14.565 3.098 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.002 3.998 5 C -0.174 4.174 6 C 0.320 3.680 7 O -0.425 6.425 8 N -0.342 5.342 9 C -0.027 4.027 10 C -0.193 4.193 11 C 0.068 3.932 12 H 0.090 0.910 13 N -0.386 5.386 14 C -0.378 4.378 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.577 5.577 18 Si 0.709 3.291 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.202 1.202 22 C 0.023 3.977 23 H 0.093 0.907 24 C -0.222 4.222 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.204 0.796 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.317 -14.767 3.163 23.740 hybrid contribution 0.653 -0.823 -1.011 1.457 sum -17.665 -15.589 2.152 23.658 Atomic orbital electron populations 1.21749 0.93737 1.02215 1.03142 1.22443 0.95454 0.83652 1.00262 1.87804 1.21275 1.26682 1.95585 1.22107 0.80461 0.95521 1.01697 1.21439 0.92636 0.97850 1.05516 1.19968 0.89706 0.81997 0.76360 1.90688 1.65325 1.35762 1.50764 1.48582 1.07949 1.05461 1.72235 1.22440 0.96102 0.83254 1.00935 1.23506 0.96245 0.98204 1.01378 1.21145 0.87625 0.89326 0.95131 0.91039 1.42969 1.37091 1.18130 1.40428 1.19051 1.11158 0.91353 1.16206 0.89024 1.24655 0.98283 0.96565 0.99288 1.69695 1.26135 1.20369 1.41546 0.86657 0.78475 0.81220 0.82745 1.20958 1.21547 1.20181 1.21838 0.79486 0.97461 0.98929 0.90666 1.22085 1.01392 1.01302 0.97446 0.91842 0.91832 0.91132 0.93332 0.93335 0.92440 0.92458 0.88177 0.88176 0.91027 0.91269 0.90717 0.90006 0.79590 0.92943 0.92543 0.90882 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.49 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.26 10.34 -35.23 -0.36 -4.63 16 4 C 0.08 0.87 5.23 37.16 0.19 1.07 16 5 C -0.13 -1.44 5.08 -27.88 -0.14 -1.58 16 6 C 0.53 7.58 7.63 -10.99 -0.08 7.49 16 7 O -0.55 -9.53 14.87 5.55 0.08 -9.45 16 8 N -0.61 -8.69 3.08 -163.02 -0.50 -9.20 16 9 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 10 C -0.15 -2.32 6.77 -24.58 -0.17 -2.49 16 11 C 0.18 3.24 3.45 -66.09 -0.23 3.01 16 12 H 0.07 1.31 8.13 -51.92 -0.42 0.89 16 13 N -0.74 -16.75 4.82 -51.65 -0.25 -17.00 16 14 C -0.25 -6.70 10.46 -15.06 -0.16 -6.86 16 15 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 16 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 17 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 18 Si 0.88 21.69 27.74 -169.99 -4.71 16.97 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.40 6.50 56.52 0.37 -6.03 16 22 C 0.13 2.10 3.49 -66.95 -0.23 1.87 16 23 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 24 C -0.16 -2.86 7.93 37.15 0.29 -2.57 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.10 0.96 7.85 -51.93 -0.41 0.56 16 33 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.37 8.27 2.80 -40.82 -0.11 8.15 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 41 H 0.07 1.36 6.72 -51.93 -0.35 1.01 16 42 H 0.06 1.15 6.73 -51.93 -0.35 0.80 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -31.76 336.45 -7.02 -38.78 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.11 Total: 5.90 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.01 Total: 1.33 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.02 Total: -53.97 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.28 Total: -14.08 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.76 -7.02 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178327946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.552 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds