Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47298 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99449 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.47420 * 125.64798 * 0.02790 * 8 6 5 10 10 C 1.54910 * 104.83619 * 204.08806 * 9 8 6 11 11 C 1.55156 * 101.57943 * 322.99717 * 10 9 8 12 12 H 1.09011 * 110.71562 * 277.13165 * 11 10 9 13 13 N 1.46499 * 110.72088 * 153.86684 * 11 10 9 14 14 C 1.36934 * 120.00627 * 86.44943 * 13 11 10 15 15 H 1.08006 * 119.99786 * 359.97438 * 14 13 11 16 16 C 1.38807 * 120.00047 * 180.02562 * 14 13 11 17 17 N 1.31625 * 119.99789 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00191 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46698 * 90.00386 * 18 16 14 20 20 H 1.48503 * 109.47024 * 209.99883 * 18 16 14 21 21 H 1.48497 * 109.47021 * 330.00048 * 18 16 14 22 22 C 1.47029 * 125.64918 * 179.71969 * 8 6 5 23 23 H 1.08994 * 109.88067 * 298.39521 * 22 8 6 24 24 C 1.52995 * 109.87863 * 59.56076 * 22 8 6 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 31 31 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 32 32 H 1.08997 * 109.47286 * 300.00017 * 5 4 3 33 33 H 1.09008 * 109.47201 * 60.00236 * 5 4 3 34 34 H 1.08998 * 110.36872 * 322.93107 * 9 8 6 35 35 H 1.09006 * 110.36484 * 85.14315 * 9 8 6 36 36 H 1.09001 * 111.00003 * 81.06611 * 10 9 8 37 37 H 1.08994 * 111.00641 * 204.87792 * 10 9 8 38 38 H 0.97005 * 119.99748 * 266.44538 * 13 11 10 39 39 H 0.97000 * 119.99510 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47502 * 58.54921 * 24 22 8 41 41 H 1.09004 * 109.46476 * 178.54356 * 24 22 8 42 42 H 1.08999 * 109.47317 * 298.54338 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3275 3.0577 0.0011 7 8 6.0149 2.0585 0.0020 8 7 5.9070 4.2744 0.0003 9 6 5.1950 5.5652 -0.0013 10 6 6.2007 6.5723 -0.6129 11 6 7.5447 6.0654 -0.0264 12 1 7.6967 6.4536 0.9808 13 7 8.6625 6.4328 -0.8991 14 6 9.2645 7.6552 -0.7630 15 1 8.9149 8.3486 -0.0123 16 6 10.3233 8.0034 -1.5903 17 7 10.9016 9.1785 -1.4597 18 14 10.9274 6.8042 -2.8890 19 1 10.1870 7.0323 -4.1559 20 1 12.3794 7.0143 -3.1195 21 1 10.6962 5.4130 -2.4239 22 6 7.3541 4.5343 0.0071 23 1 7.8003 4.1230 0.9126 24 6 8.0016 3.9047 -1.2278 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8332 0.9769 0.8908 31 1 3.8340 0.9766 -0.8891 32 1 3.4228 3.4215 -0.8905 33 1 3.4220 3.4226 0.8895 34 1 4.2981 5.5030 -0.6176 35 1 4.9355 5.8565 1.0166 36 1 6.2016 6.5112 -1.7012 37 1 5.9871 7.5882 -0.2809 38 1 8.9763 5.8101 -1.5735 39 1 11.6417 9.4217 -2.0376 40 1 7.5451 4.3171 -2.1276 41 1 9.0695 4.1234 -1.2294 42 1 7.8517 2.8253 -1.2063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178327946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = -87.536503 kcal Electronic energy + Delta-G solvation = -21106.240543 eV Core-core repulsion = 17893.003606 eV Total energy + Delta-G solvation = -3213.236937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39760 -39.36568 -38.63567 -36.04955 -33.93178 -33.29400 -32.15982 -31.54009 -30.45520 -26.94159 -25.65535 -24.51978 -23.67234 -23.38398 -20.97368 -20.04681 -19.80670 -18.45552 -17.56243 -17.19692 -17.07922 -16.51535 -16.38089 -15.85376 -15.47788 -15.31318 -14.90275 -14.58554 -14.50008 -14.00444 -13.63462 -13.46918 -13.23698 -13.19701 -13.05195 -12.96629 -12.82403 -12.71624 -12.58987 -12.24322 -12.03502 -11.99851 -11.91764 -11.72221 -11.55198 -10.98000 -10.86925 -10.59968 -9.70499 -9.32278 -8.02647 -5.36065 1.36392 1.37661 1.44611 1.57334 1.78680 2.46566 2.75142 3.26859 3.50636 3.55377 3.76077 3.85839 4.02044 4.06609 4.13287 4.18056 4.33183 4.35649 4.38272 4.46219 4.49026 4.50762 4.58527 4.72176 4.78425 4.82844 4.84023 4.92724 5.01769 5.05126 5.13103 5.23941 5.28909 5.29323 5.46482 5.77902 6.18826 6.21426 6.53107 7.05997 7.09821 7.81956 7.99931 9.18398 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043512 B = 0.003441 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.339034 B = 8134.439956 C = 8449.581454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.082 3.918 5 C -0.124 4.124 6 C 0.529 3.471 7 O -0.583 6.583 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.146 4.146 11 C 0.168 3.832 12 H 0.068 0.932 13 N -0.747 5.747 14 C -0.225 4.225 15 H 0.066 0.934 16 C -0.059 4.059 17 N -0.980 5.980 18 Si 0.940 3.060 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.255 1.255 22 C 0.132 3.868 23 H 0.070 0.930 24 C -0.157 4.157 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.369 0.631 39 H 0.257 0.743 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.090 -16.014 2.980 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.324 6.324 4 C 0.005 3.995 5 C -0.163 4.163 6 C 0.320 3.680 7 O -0.464 6.464 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.187 4.187 11 C 0.059 3.941 12 H 0.086 0.914 13 N -0.392 5.392 14 C -0.356 4.356 15 H 0.084 0.916 16 C -0.251 4.251 17 N -0.631 5.631 18 Si 0.768 3.232 19 H -0.204 1.204 20 H -0.223 1.223 21 H -0.180 1.180 22 C 0.028 3.972 23 H 0.088 0.912 24 C -0.215 4.215 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.206 0.794 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.840 -16.251 3.066 26.604 hybrid contribution 1.331 -0.398 -0.877 1.643 sum -19.509 -16.649 2.189 25.741 Atomic orbital electron populations 1.21760 0.92398 1.03429 1.02926 1.22676 0.96580 0.82737 1.00760 1.87783 1.20808 1.28158 1.95621 1.22011 0.80792 0.95745 1.00968 1.21402 0.89567 0.97972 1.07374 1.20598 0.91070 0.81172 0.75197 1.90677 1.66458 1.36955 1.52335 1.48609 1.06872 1.06529 1.72171 1.22565 0.95729 0.80759 1.02775 1.23341 0.95138 0.99430 1.00756 1.21356 0.87655 0.90738 0.94365 0.91422 1.42972 1.38295 1.16645 1.41313 1.19031 1.10159 0.92165 1.14211 0.91608 1.25375 0.99260 0.98341 1.02135 1.69857 1.27281 1.22672 1.43257 0.85650 0.77288 0.80086 0.80171 1.20430 1.22319 1.18011 1.21579 0.81395 0.95915 0.98336 0.91218 1.21987 1.00532 1.01150 0.97829 0.91976 0.92076 0.89263 0.92940 0.92794 0.93138 0.93400 0.86335 0.85994 0.87732 0.88829 0.91747 0.89674 0.79426 0.93389 0.92545 0.92283 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.40 -7.80 10.34 -148.98 -1.54 -9.34 16 4 C 0.08 1.64 5.23 71.98 0.38 2.01 16 5 C -0.12 -2.23 5.08 29.85 0.15 -2.07 16 6 C 0.53 13.77 7.63 87.66 0.67 14.43 16 7 O -0.58 -19.57 14.87 -3.04 -0.05 -19.62 16 8 N -0.61 -15.71 3.08 -788.05 -2.43 -18.14 16 9 C 0.10 2.07 6.69 86.86 0.58 2.65 16 10 C -0.15 -4.12 6.77 31.99 0.22 -3.90 16 11 C 0.17 5.89 3.45 46.18 0.16 6.05 16 12 H 0.07 2.43 8.13 -2.38 -0.02 2.41 16 13 N -0.75 -33.29 4.82 -317.31 -1.53 -34.82 16 14 C -0.22 -12.25 10.46 84.03 0.88 -11.38 16 15 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 16 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 17 N -0.98 -61.67 13.97 21.65 0.30 -61.37 16 18 Si 0.94 45.01 27.74 68.60 1.90 46.92 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.26 -11.18 6.50 99.48 0.65 -10.54 16 22 C 0.13 4.20 3.49 45.34 0.16 4.36 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.16 -5.28 7.93 71.98 0.57 -4.71 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 32 H 0.12 1.76 7.85 -2.39 -0.02 1.74 16 33 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.10 1.51 7.48 -2.39 -0.02 1.49 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.37 16.19 2.80 -92.70 -0.26 15.93 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 41 H 0.06 2.13 6.72 -2.38 -0.02 2.12 16 42 H 0.06 2.16 6.73 -2.39 -0.02 2.14 16 Total: -1.00 -69.48 336.45 2.78 -66.70 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.67 Total: 24.88 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.45 Total: 4.79 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -3.65 Total: -114.33 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.59 Total: -28.96 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Total: -69.48 2.78 -66.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178327946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.837 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds