Wall clock time and date at job start Mon Mar 30 2020 00:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47212 * 2 1 4 4 C 1.46499 * 119.99642 * 270.00062 * 3 2 1 5 5 C 1.50702 * 109.47130 * 269.99766 * 4 3 2 6 6 H 1.07999 * 120.00005 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00126 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99702 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47449 * 59.99430 * 9 7 5 11 11 H 1.48503 * 109.47385 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47098 * 300.00010 * 9 7 5 13 13 C 1.34772 * 119.99866 * 90.00221 * 3 2 1 14 14 O 1.21591 * 120.00030 * 180.02562 * 13 3 2 15 15 N 1.34782 * 120.00279 * 359.97438 * 13 3 2 16 16 C 1.46501 * 120.00050 * 180.02562 * 15 13 3 17 17 C 1.53000 * 109.47214 * 180.02562 * 16 15 13 18 18 C 1.53175 * 109.53913 * 65.44419 * 17 16 15 19 19 C 1.53092 * 109.16179 * 176.85000 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 1.09004 * 109.46889 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47072 * 299.99602 * 1 2 3 25 25 H 1.08996 * 109.46904 * 60.00040 * 1 2 3 26 26 H 1.09004 * 109.47415 * 240.00007 * 2 1 3 27 27 H 1.09009 * 109.47109 * 119.99696 * 2 1 3 28 28 H 1.08996 * 109.47041 * 30.00120 * 4 3 2 29 29 H 1.09000 * 109.46650 * 150.00305 * 4 3 2 30 30 H 0.97007 * 120.00057 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99661 * 0.02562 * 15 13 3 32 32 H 1.09005 * 109.46742 * 60.00001 * 16 15 13 33 33 H 1.09005 * 109.47088 * 300.00318 * 16 15 13 34 34 H 1.08997 * 109.61228 * 305.22714 * 17 16 15 35 35 H 1.09006 * 109.52647 * 296.75300 * 18 17 16 36 36 H 1.08998 * 109.52537 * 56.94192 * 18 17 16 37 37 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 38 38 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 39 39 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 40 40 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 41 41 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 42 42 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3493 3.1264 -3.6176 9 14 5.9133 2.0963 -3.4171 10 1 6.1402 0.6396 -3.5954 11 1 6.1612 2.7974 -4.7025 12 1 6.8412 2.6186 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6479 3.1631 1.1672 15 7 2.0179 1.3814 2.3344 16 6 2.2616 2.0722 3.6032 17 6 1.9304 1.1348 4.7661 18 6 2.9057 -0.0463 4.7659 19 6 2.6171 -0.9365 5.9775 20 8 2.7289 -0.1621 7.1733 21 6 1.8085 0.9283 7.2504 22 6 2.0646 1.8934 6.0900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.5817 1.6877 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 3.6754 3.5168 -4.4436 31 1 1.6946 0.4669 2.3344 32 1 1.6314 2.9597 3.6605 33 1 3.3096 2.3664 3.6612 34 1 0.9105 0.7654 4.6592 35 1 2.7779 -0.6242 3.8506 36 1 3.9286 0.3260 4.8228 37 1 3.3359 -1.7555 6.0063 38 1 1.6080 -1.3409 5.8994 39 1 1.9447 1.4528 8.1962 40 1 0.7887 0.5485 7.1890 41 1 3.0705 2.3049 6.1736 42 1 1.3352 2.7028 6.1215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186921672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:50 Heat of formation + Delta-G solvation = -88.029501 kcal Electronic energy + Delta-G solvation = -21444.085030 eV Core-core repulsion = 18230.826715 eV Total energy + Delta-G solvation = -3213.258315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90363 -39.09776 -35.86168 -35.05021 -33.06243 -32.31942 -31.31435 -30.05798 -27.86307 -26.31870 -23.82472 -23.27609 -22.97037 -21.98719 -20.36317 -19.12850 -17.39454 -16.37301 -16.28241 -16.17556 -15.88558 -15.28792 -14.91980 -14.59521 -14.31602 -14.04959 -13.52102 -13.41271 -13.17726 -12.90558 -12.57189 -12.34247 -12.02712 -11.98457 -11.63995 -11.55182 -11.16288 -11.13691 -10.91561 -10.81499 -10.73544 -10.50533 -10.46385 -10.07607 -9.75284 -9.60346 -9.16910 -8.58584 -8.37728 -7.53651 -5.98530 -4.02804 3.34915 3.38609 3.39362 3.45428 3.64923 4.05527 4.43000 4.48304 4.52589 4.57814 4.67856 4.79549 4.97144 5.13479 5.21186 5.32516 5.35122 5.41870 5.42601 5.46799 5.58127 5.63430 5.70982 5.75757 5.86206 5.90201 5.97525 6.02478 6.19679 6.24379 6.49178 6.91402 6.94766 6.97741 7.44717 7.63637 7.81108 8.02255 8.31163 8.80242 8.98679 9.44788 9.63790 11.09245 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.004036 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.535280 B = 6936.017029 C = 7232.597178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.614 5.614 4 C 0.262 3.738 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.700 3.300 14 O -0.587 6.587 15 N -0.758 5.758 16 C 0.147 3.853 17 C -0.100 4.100 18 C -0.152 4.152 19 C 0.061 3.939 20 O -0.385 6.385 21 C 0.062 3.938 22 C -0.149 4.149 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.389 0.611 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -9.143 18.144 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 N -0.349 5.349 4 C 0.142 3.858 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.401 3.599 14 O -0.465 6.465 15 N -0.418 5.418 16 C 0.022 3.978 17 C -0.119 4.119 18 C -0.190 4.190 19 C -0.016 4.016 20 O -0.304 6.304 21 C -0.015 4.015 22 C -0.187 4.187 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.224 0.776 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.960 -8.197 18.063 20.712 hybrid contribution 0.616 -0.536 -0.699 1.075 sum -5.344 -8.733 17.365 20.158 Atomic orbital electron populations 1.22245 0.96982 1.01195 1.02434 1.21288 0.93328 0.84673 1.02099 1.47544 1.67810 1.13097 1.06446 1.19147 0.95950 0.93442 0.77231 1.21452 0.97131 1.31666 1.06097 0.92630 1.24922 0.97756 0.95008 0.96436 1.69925 1.35671 1.33582 1.14386 0.86574 0.84972 0.78164 0.77769 1.20327 1.21213 1.20252 1.15934 0.78944 0.84728 0.80256 1.90884 1.52503 1.17003 1.86083 1.45306 1.74422 1.17254 1.04780 1.21058 1.01316 0.94324 0.81086 1.21433 0.99821 0.95973 0.94685 1.22270 1.00690 0.97201 0.98800 1.22595 1.01164 0.93458 0.84344 1.87932 1.59407 1.43158 1.39879 1.22565 0.92582 0.87625 0.98697 1.22171 1.03656 0.98749 0.94121 0.92343 0.93157 0.91932 0.89908 0.92651 0.95092 0.93936 0.92744 0.77636 0.91995 0.91909 0.90584 0.90706 0.90549 0.88874 0.93258 0.88854 0.93249 0.90498 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.79 5.89 -4.04 -0.02 1.77 16 3 N -0.61 -13.30 2.46 -180.79 -0.44 -13.74 16 4 C 0.26 7.00 5.16 -5.19 -0.03 6.97 16 5 C -0.52 -15.18 9.39 -34.44 -0.32 -15.50 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.70 15.29 8.28 -86.92 -0.72 14.57 16 14 O -0.59 -15.72 15.92 5.29 0.08 -15.64 16 15 N -0.76 -11.97 5.18 -65.22 -0.34 -12.31 16 16 C 0.15 2.01 5.07 -4.04 -0.02 1.99 16 17 C -0.10 -0.97 2.31 -90.44 -0.21 -1.18 16 18 C -0.15 -1.44 5.26 -26.59 -0.14 -1.58 16 19 C 0.06 0.52 6.84 37.21 0.25 0.78 16 20 O -0.38 -3.96 10.77 -35.23 -0.38 -4.34 16 21 C 0.06 0.50 6.84 37.20 0.25 0.76 16 22 C -0.15 -1.28 5.42 -26.59 -0.14 -1.43 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 27 H 0.06 0.74 6.36 -51.92 -0.33 0.41 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.39 5.02 5.44 -40.82 -0.22 4.80 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.68 7.31 -51.93 -0.38 0.30 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -34.57 339.27 -8.26 -42.83 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.20 Total: 0.28 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.81 Total: 6.89 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.05 Total: -52.34 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.30 Total: -19.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.57 -8.26 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186921672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.203 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds