Wall clock time and date at job start Mon Mar 30 2020 01:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.47506 * 2 1 4 4 C 1.42893 * 114.00204 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47321 * 30.00256 * 4 3 2 6 6 C 1.53001 * 109.47310 * 270.00005 * 4 3 2 7 7 C 1.50704 * 109.47111 * 149.99953 * 4 3 2 8 8 O 1.21285 * 119.99528 * 9.09492 * 7 4 3 9 9 N 1.34778 * 120.00213 * 189.08559 * 7 4 3 10 10 C 1.47017 * 125.64580 * 4.92059 * 9 7 4 11 11 C 1.54334 * 107.26614 * 178.84269 * 10 9 7 12 12 C 1.55156 * 103.01742 * 338.13948 * 11 10 9 13 13 H 1.08998 * 111.00559 * 277.22760 * 12 11 10 14 14 N 1.46509 * 111.00469 * 153.37960 * 12 11 10 15 15 C 1.46500 * 119.99789 * 307.80485 * 14 12 11 16 16 C 1.36933 * 119.99862 * 127.79985 * 14 12 11 17 17 H 1.07995 * 120.00056 * 24.14597 * 16 14 12 18 18 C 1.38817 * 119.99800 * 204.14337 * 16 14 12 19 19 N 1.31617 * 120.00056 * 12.73009 * 18 16 14 20 20 Si 1.86800 * 119.99591 * 192.73107 * 18 16 14 21 21 H 1.48492 * 109.47696 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.46834 * 120.00426 * 20 18 16 23 23 H 1.48501 * 109.46800 * 239.99489 * 20 18 16 24 24 C 1.47418 * 125.64744 * 185.21761 * 9 7 4 25 25 H 1.09000 * 109.46575 * 299.99993 * 1 2 3 26 26 H 1.08996 * 109.46939 * 59.99679 * 1 2 3 27 27 H 1.08992 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47162 * 240.00475 * 2 1 3 29 29 H 1.09006 * 109.47414 * 120.00225 * 2 1 3 30 30 H 1.08999 * 109.47215 * 294.26761 * 6 4 3 31 31 H 1.08999 * 109.47028 * 54.27099 * 6 4 3 32 32 H 1.09008 * 109.47150 * 174.26740 * 6 4 3 33 33 H 1.09000 * 109.88372 * 298.38852 * 10 9 7 34 34 H 1.09000 * 109.88796 * 59.54836 * 10 9 7 35 35 H 1.08997 * 110.85108 * 219.66749 * 11 10 9 36 36 H 1.09002 * 110.66561 * 96.51888 * 11 10 9 37 37 H 1.08996 * 109.47391 * 89.65441 * 15 14 12 38 38 H 1.08998 * 109.46872 * 209.65330 * 15 14 12 39 39 H 1.09003 * 109.47032 * 329.65025 * 15 14 12 40 40 H 0.96992 * 119.99871 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.36799 * 322.93720 * 24 9 7 42 42 H 1.08995 * 110.36719 * 85.15107 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9388 1.5005 1.4433 7 6 3.8349 2.7263 -0.7099 8 8 2.9924 3.5398 -1.0253 9 7 5.1323 2.9547 -0.9946 10 6 6.2386 2.0146 -0.7631 11 6 7.5296 2.6934 -1.2676 12 6 6.9987 3.7557 -2.2661 13 1 6.8063 3.3121 -3.2429 14 7 7.9283 4.8827 -2.3774 15 6 8.3919 5.5717 -1.1706 16 6 8.3638 5.2917 -3.6095 17 1 7.7713 5.0838 -4.4882 18 6 9.5669 5.9738 -3.7292 19 7 10.4060 6.0108 -2.7158 20 14 9.9949 6.8392 -5.3284 21 1 8.8927 6.6481 -6.3050 22 1 10.1833 8.2896 -5.0712 23 1 11.2493 6.2673 -5.8802 24 6 5.6777 4.1910 -1.5840 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5884 2.4127 1.9264 31 1 3.5611 0.6339 1.9858 32 1 5.0287 1.4839 1.4454 33 1 6.3236 1.7970 0.3015 34 1 6.0648 1.0933 -1.3191 35 1 8.1730 1.9747 -1.7751 36 1 8.0609 3.1700 -0.4437 37 1 9.2978 5.0901 -0.8025 38 1 8.6050 6.6143 -1.4067 39 1 7.6178 5.5236 -0.4047 40 1 11.2465 6.4877 -2.7993 41 1 4.9857 4.5970 -2.3217 42 1 5.8758 4.9273 -0.8051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189001798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:49 Heat of formation + Delta-G solvation = -53.203945 kcal Electronic energy + Delta-G solvation = -21488.512837 eV Core-core repulsion = 18276.764671 eV Total energy + Delta-G solvation = -3211.748165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07442 -38.26051 -37.04270 -34.85269 -32.72848 -31.55060 -30.31941 -29.69783 -27.82883 -26.07535 -24.95034 -23.25011 -22.64897 -22.19009 -19.36603 -19.21995 -17.25880 -17.08823 -16.69692 -16.02994 -15.72453 -15.15108 -14.67730 -14.33403 -13.81296 -13.50578 -13.38902 -13.15816 -12.92665 -12.70769 -12.50624 -12.42766 -12.22707 -12.12071 -11.85205 -11.52975 -11.34140 -11.20442 -10.96875 -10.80932 -10.52268 -10.48942 -10.23866 -9.99706 -9.93259 -9.85803 -9.36134 -8.60630 -8.34907 -6.81902 -5.80777 -3.27292 2.76834 2.82437 3.35207 3.43131 3.45341 3.77354 4.44315 4.50053 4.72701 4.77104 4.90902 4.99219 5.01933 5.10823 5.12166 5.28905 5.36538 5.46238 5.48708 5.54337 5.61123 5.68108 5.73519 5.86919 5.91237 5.96195 6.02364 6.29276 6.36097 6.50544 6.61079 6.77103 6.85269 6.97659 7.31330 7.63560 7.75464 7.76554 8.32481 8.37539 9.16234 9.78080 10.27271 11.25219 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041823 B = 0.003678 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.324324 B = 7610.386285 C = 7886.340727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.076 3.924 5 H 0.082 0.918 6 C -0.171 4.171 7 C 0.526 3.474 8 O -0.526 6.526 9 N -0.612 5.612 10 C 0.098 3.902 11 C -0.150 4.150 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.584 5.584 15 C 0.160 3.840 16 C -0.260 4.260 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.905 5.905 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.086 3.914 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.051 0.949 39 H -0.001 1.001 40 H 0.253 0.747 41 H 0.073 0.927 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -13.542 7.856 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.015 3.985 5 H 0.100 0.900 6 C -0.228 4.228 7 C 0.313 3.687 8 O -0.402 6.402 9 N -0.348 5.348 10 C -0.026 4.026 11 C -0.191 4.191 12 C 0.062 3.938 13 H 0.097 0.903 14 N -0.305 5.305 15 C 0.015 3.985 16 C -0.390 4.390 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C -0.038 4.038 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.018 0.982 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.698 -12.832 7.701 18.995 hybrid contribution 0.647 0.140 -0.696 0.961 sum -11.051 -12.692 7.005 18.229 Atomic orbital electron populations 1.21723 0.93495 1.02093 1.03447 1.22583 0.95916 0.83750 1.00008 1.88056 1.18638 1.26091 1.94955 1.21827 0.83299 0.96660 0.96739 0.90022 1.22255 1.02095 1.03600 0.94894 1.19941 0.81199 0.87990 0.79582 1.90707 1.49406 1.47485 1.52591 1.48408 1.05534 1.18573 1.62259 1.22197 0.87509 0.92728 1.00145 1.23197 0.94964 0.99711 1.01191 1.21416 0.88184 0.88013 0.96138 0.90337 1.43811 1.50813 1.31745 1.04100 1.20789 0.94299 0.97412 0.85965 1.19271 1.01347 1.32926 0.85444 0.91220 1.25047 0.95322 1.01440 0.97535 1.70070 1.09349 1.44820 1.30648 0.86162 0.77980 0.79289 0.82970 1.20202 1.21530 1.21684 1.23023 0.97171 0.85758 0.97861 0.91768 0.91640 0.91105 0.93291 0.93290 0.91194 0.91345 0.90508 0.91771 0.91918 0.90432 0.90422 0.95594 0.93045 0.98216 0.93678 0.90887 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.97 9.54 -54.98 -0.52 -5.49 16 4 C 0.08 0.96 2.53 -27.88 -0.07 0.89 16 5 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 6 C -0.17 -1.74 9.40 37.16 0.35 -1.39 16 7 C 0.53 8.85 7.17 -10.98 -0.08 8.77 16 8 O -0.53 -11.17 16.76 -14.19 -0.24 -11.41 16 9 N -0.61 -9.80 3.33 -170.52 -0.57 -10.37 16 10 C 0.10 1.26 6.17 -3.06 -0.02 1.24 16 11 C -0.15 -2.42 6.50 -24.89 -0.16 -2.58 16 12 C 0.17 3.40 3.55 -65.78 -0.23 3.17 16 13 H 0.08 1.57 7.96 -51.93 -0.41 1.15 16 14 N -0.58 -14.08 2.95 -171.03 -0.51 -14.58 16 15 C 0.16 3.77 7.61 59.85 0.46 4.23 16 16 C -0.26 -6.97 9.59 -15.06 -0.14 -7.11 16 17 H 0.07 1.84 7.86 -52.49 -0.41 1.42 16 18 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 19 N -0.90 -25.62 10.80 55.49 0.60 -25.02 16 20 Si 0.91 21.48 29.57 -169.99 -5.03 16.45 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 C 0.09 1.60 6.50 -2.53 -0.02 1.59 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.05 0.37 7.77 -51.93 -0.40 -0.03 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 32 H 0.08 0.69 5.69 -51.92 -0.30 0.40 16 33 H 0.06 0.70 5.92 -51.93 -0.31 0.39 16 34 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 37 H 0.03 0.65 7.56 -51.93 -0.39 0.26 16 38 H 0.05 1.33 7.04 -51.93 -0.37 0.97 16 39 H 0.00 -0.01 6.40 -51.93 -0.33 -0.34 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.07 1.47 7.99 -51.93 -0.41 1.05 16 42 H 0.07 1.33 6.37 -51.93 -0.33 1.00 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -31.99 333.27 -7.55 -39.53 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.92 Total: -2.89 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 0.61 Total: 8.75 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.47 Total: -49.97 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.76 Total: -16.90 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.99 -7.55 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189001798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.670 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds