Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.47506 * 2 1 4 4 C 1.42893 * 114.00204 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47321 * 30.00256 * 4 3 2 6 6 C 1.53001 * 109.47310 * 270.00005 * 4 3 2 7 7 C 1.50704 * 109.47111 * 149.99953 * 4 3 2 8 8 O 1.21285 * 119.99528 * 9.09492 * 7 4 3 9 9 N 1.34778 * 120.00213 * 189.08559 * 7 4 3 10 10 C 1.47017 * 125.64580 * 4.92059 * 9 7 4 11 11 C 1.54334 * 107.26614 * 178.84269 * 10 9 7 12 12 C 1.55156 * 103.01742 * 338.13948 * 11 10 9 13 13 H 1.08998 * 111.00559 * 277.22760 * 12 11 10 14 14 N 1.46509 * 111.00469 * 153.37960 * 12 11 10 15 15 C 1.46500 * 119.99789 * 307.80485 * 14 12 11 16 16 C 1.36933 * 119.99862 * 127.79985 * 14 12 11 17 17 H 1.07995 * 120.00056 * 24.14597 * 16 14 12 18 18 C 1.38817 * 119.99800 * 204.14337 * 16 14 12 19 19 N 1.31617 * 120.00056 * 12.73009 * 18 16 14 20 20 Si 1.86800 * 119.99591 * 192.73107 * 18 16 14 21 21 H 1.48492 * 109.47696 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.46834 * 120.00426 * 20 18 16 23 23 H 1.48501 * 109.46800 * 239.99489 * 20 18 16 24 24 C 1.47418 * 125.64744 * 185.21761 * 9 7 4 25 25 H 1.09000 * 109.46575 * 299.99993 * 1 2 3 26 26 H 1.08996 * 109.46939 * 59.99679 * 1 2 3 27 27 H 1.08992 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47162 * 240.00475 * 2 1 3 29 29 H 1.09006 * 109.47414 * 120.00225 * 2 1 3 30 30 H 1.08999 * 109.47215 * 294.26761 * 6 4 3 31 31 H 1.08999 * 109.47028 * 54.27099 * 6 4 3 32 32 H 1.09008 * 109.47150 * 174.26740 * 6 4 3 33 33 H 1.09000 * 109.88372 * 298.38852 * 10 9 7 34 34 H 1.09000 * 109.88796 * 59.54836 * 10 9 7 35 35 H 1.08997 * 110.85108 * 219.66749 * 11 10 9 36 36 H 1.09002 * 110.66561 * 96.51888 * 11 10 9 37 37 H 1.08996 * 109.47391 * 89.65441 * 15 14 12 38 38 H 1.08998 * 109.46872 * 209.65330 * 15 14 12 39 39 H 1.09003 * 109.47032 * 329.65025 * 15 14 12 40 40 H 0.96992 * 119.99871 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.36799 * 322.93720 * 24 9 7 42 42 H 1.08995 * 110.36719 * 85.15107 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9388 1.5005 1.4433 7 6 3.8349 2.7263 -0.7099 8 8 2.9924 3.5398 -1.0253 9 7 5.1323 2.9547 -0.9946 10 6 6.2386 2.0146 -0.7631 11 6 7.5296 2.6934 -1.2676 12 6 6.9987 3.7557 -2.2661 13 1 6.8063 3.3121 -3.2429 14 7 7.9283 4.8827 -2.3774 15 6 8.3919 5.5717 -1.1706 16 6 8.3638 5.2917 -3.6095 17 1 7.7713 5.0838 -4.4882 18 6 9.5669 5.9738 -3.7292 19 7 10.4060 6.0108 -2.7158 20 14 9.9949 6.8392 -5.3284 21 1 8.8927 6.6481 -6.3050 22 1 10.1833 8.2896 -5.0712 23 1 11.2493 6.2673 -5.8802 24 6 5.6777 4.1910 -1.5840 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5884 2.4127 1.9264 31 1 3.5611 0.6339 1.9858 32 1 5.0287 1.4839 1.4454 33 1 6.3236 1.7970 0.3015 34 1 6.0648 1.0933 -1.3191 35 1 8.1730 1.9747 -1.7751 36 1 8.0609 3.1700 -0.4437 37 1 9.2978 5.0901 -0.8025 38 1 8.6050 6.6143 -1.4067 39 1 7.6178 5.5236 -0.4047 40 1 11.2465 6.4877 -2.7993 41 1 4.9857 4.5970 -2.3217 42 1 5.8758 4.9273 -0.8051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189001798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = -73.557468 kcal Electronic energy + Delta-G solvation = -21489.395432 eV Core-core repulsion = 18276.764671 eV Total energy + Delta-G solvation = -3212.630760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33565 -39.42115 -38.37027 -36.58799 -33.89057 -33.03784 -31.45444 -30.91552 -29.27065 -28.05870 -26.17881 -24.61220 -23.73382 -23.32235 -20.98654 -20.43035 -18.95001 -18.36298 -17.80990 -17.49157 -16.74130 -16.46099 -16.17698 -15.79354 -15.09100 -14.98322 -14.67973 -14.36712 -14.27397 -14.16978 -13.78385 -13.41729 -13.35667 -13.12491 -13.00381 -12.87223 -12.77518 -12.49867 -12.38334 -12.27730 -12.14824 -12.07563 -12.01010 -11.84424 -11.41107 -10.98542 -10.65399 -10.48142 -9.70197 -8.78166 -7.86840 -5.34865 1.45817 1.48360 1.50633 1.57875 1.67593 2.49538 2.84800 3.26696 3.43995 3.54217 3.87392 3.89991 4.00021 4.03507 4.19364 4.21559 4.28189 4.34102 4.44332 4.49957 4.55238 4.71133 4.77241 4.77515 4.86794 4.92696 5.00288 5.03859 5.16483 5.20824 5.24907 5.28294 5.31304 5.41912 5.62736 5.69422 6.14483 6.31526 6.51563 7.07927 7.13131 7.82517 8.26923 9.17528 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041823 B = 0.003678 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.324324 B = 7610.386285 C = 7886.340727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.395 6.395 4 C 0.082 3.918 5 H 0.115 0.885 6 C -0.165 4.165 7 C 0.518 3.482 8 O -0.583 6.583 9 N -0.609 5.609 10 C 0.102 3.898 11 C -0.140 4.140 12 C 0.166 3.834 13 H 0.073 0.927 14 N -0.601 5.601 15 C 0.178 3.822 16 C -0.269 4.269 17 H 0.068 0.932 18 C -0.045 4.045 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.270 1.270 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.097 3.903 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.009 0.991 38 H 0.019 0.981 39 H 0.025 0.975 40 H 0.250 0.750 41 H 0.048 0.952 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 -16.281 8.600 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.314 6.314 4 C 0.021 3.979 5 H 0.133 0.867 6 C -0.222 4.222 7 C 0.308 3.692 8 O -0.463 6.463 9 N -0.344 5.344 10 C -0.019 4.019 11 C -0.180 4.180 12 C 0.057 3.943 13 H 0.091 0.909 14 N -0.323 5.323 15 C 0.033 3.967 16 C -0.399 4.399 17 H 0.086 0.914 18 C -0.241 4.241 19 N -0.578 5.578 20 Si 0.795 3.205 21 H -0.194 1.194 22 H -0.219 1.219 23 H -0.216 1.216 24 C -0.029 4.029 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.038 0.962 39 H 0.043 0.957 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.049 -15.628 8.458 21.470 hybrid contribution 0.665 0.962 -0.929 1.493 sum -11.385 -14.667 7.530 20.035 Atomic orbital electron populations 1.21773 0.93180 1.03516 1.02348 1.22869 0.96306 0.82112 1.01706 1.88029 1.19314 1.28891 1.95195 1.21899 0.83357 0.94789 0.97825 0.86734 1.22253 1.03000 1.03858 0.93117 1.20928 0.80510 0.89030 0.78779 1.90677 1.50925 1.49739 1.54921 1.48452 1.06350 1.18020 1.61586 1.22391 0.84329 0.92471 1.02725 1.23037 0.96607 0.98654 0.99678 1.21527 0.87734 0.87881 0.97175 0.90913 1.43956 1.51408 1.33544 1.03347 1.20495 0.94418 0.95296 0.86478 1.19540 1.01202 1.32712 0.86465 0.91432 1.25736 0.95482 1.02466 1.00415 1.70200 1.09570 1.45757 1.32283 0.85214 0.77685 0.77766 0.79805 1.19409 1.21911 1.21569 1.22642 0.96233 0.87016 0.96986 0.92329 0.93310 0.88389 0.92205 0.90777 0.93243 0.88601 0.88923 0.88374 0.88579 0.89491 0.91329 0.97249 0.96163 0.95650 0.94096 0.93298 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.73 6.47 71.98 0.47 1.20 16 3 O -0.39 -10.18 9.54 -130.10 -1.24 -11.42 16 4 C 0.08 1.82 2.53 29.85 0.08 1.90 16 5 H 0.12 1.77 7.61 -2.39 -0.02 1.75 16 6 C -0.16 -2.73 9.40 71.98 0.68 -2.06 16 7 C 0.52 16.80 7.17 87.66 0.63 17.43 16 8 O -0.58 -25.21 16.76 15.84 0.27 -24.95 16 9 N -0.61 -18.45 3.33 -811.79 -2.70 -21.15 16 10 C 0.10 2.25 6.17 86.73 0.54 2.79 16 11 C -0.14 -4.18 6.50 31.79 0.21 -3.97 16 12 C 0.17 6.44 3.55 46.38 0.16 6.61 16 13 H 0.07 2.89 7.96 -2.39 -0.02 2.87 16 14 N -0.60 -29.28 2.95 -695.01 -2.05 -31.33 16 15 C 0.18 8.55 7.61 127.77 0.97 9.52 16 16 C -0.27 -14.57 9.59 84.04 0.81 -13.77 16 17 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 18 C -0.05 -2.49 5.06 84.86 0.43 -2.06 16 19 N -0.93 -53.74 10.80 21.65 0.23 -53.51 16 20 Si 0.97 44.67 29.57 68.60 2.03 46.70 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 C 0.10 3.61 6.50 86.86 0.56 4.17 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 29 H 0.07 0.81 7.77 -2.38 -0.02 0.79 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.09 7.77 -2.39 -0.02 1.07 16 32 H 0.09 1.22 5.69 -2.38 -0.01 1.20 16 33 H 0.10 1.59 5.92 -2.39 -0.01 1.58 16 34 H 0.10 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.07 2.20 7.00 -2.39 -0.02 2.18 16 37 H 0.01 0.47 7.56 -2.39 -0.02 0.45 16 38 H 0.02 1.06 7.04 -2.39 -0.02 1.04 16 39 H 0.03 1.06 6.40 -2.39 -0.02 1.04 16 40 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.05 2.04 7.99 -2.39 -0.02 2.02 16 42 H 0.06 2.26 6.37 -2.39 -0.02 2.24 16 Total: -1.00 -72.38 333.27 3.79 -68.59 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.99 Total: 6.80 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 6.27 Total: 20.27 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.52 Total: -105.99 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.98 Total: -36.37 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.38 3.79 -68.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189001798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.963 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds