Wall clock time and date at job start Mon Mar 30 2020 01:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46587 * 2 1 4 4 C 1.42903 * 113.99731 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47446 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00155 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00165 * 179.97438 * 6 5 4 9 9 C 1.47029 * 125.64837 * 359.97438 * 8 6 5 10 10 C 1.54321 * 107.27030 * 178.98695 * 9 8 6 11 11 C 1.55152 * 102.94577 * 337.80748 * 10 9 8 12 12 H 1.09005 * 111.00591 * 277.38822 * 11 10 9 13 13 N 1.46506 * 111.00850 * 153.57553 * 11 10 9 14 14 C 1.46494 * 119.99803 * 301.45499 * 13 11 10 15 15 C 1.36934 * 120.00021 * 121.45409 * 13 11 10 16 16 H 1.08001 * 119.99952 * 21.72465 * 15 13 11 17 17 C 1.38808 * 120.00053 * 201.73044 * 15 13 11 18 18 N 1.31623 * 120.00217 * 13.62298 * 17 15 13 19 19 Si 1.86800 * 120.00106 * 193.62828 * 17 15 13 20 20 H 1.48493 * 109.47126 * 59.99715 * 19 17 15 21 21 H 1.48497 * 109.47309 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47243 * 299.99739 * 19 17 15 23 23 C 1.47426 * 125.65263 * 180.02562 * 8 6 5 24 24 H 1.08999 * 109.46948 * 60.00444 * 1 2 3 25 25 H 1.08999 * 109.46621 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47319 * 300.00221 * 1 2 3 27 27 H 1.09003 * 109.47762 * 240.00194 * 2 1 3 28 28 H 1.09001 * 109.47408 * 119.99324 * 2 1 3 29 29 H 1.08998 * 109.47264 * 59.99642 * 4 3 2 30 30 H 1.09000 * 109.47314 * 299.99507 * 4 3 2 31 31 H 1.08998 * 109.47331 * 59.99593 * 5 4 3 32 32 H 1.09004 * 109.47185 * 299.99878 * 5 4 3 33 33 H 1.09000 * 109.88066 * 59.57148 * 9 8 6 34 34 H 1.08994 * 110.00695 * 298.47341 * 9 8 6 35 35 H 1.09000 * 110.72010 * 219.44417 * 10 9 8 36 36 H 1.09003 * 110.72014 * 96.17139 * 10 9 8 37 37 H 1.09005 * 109.47201 * 94.44565 * 14 13 11 38 38 H 1.08997 * 109.47388 * 214.44171 * 14 13 11 39 39 H 1.08998 * 109.47814 * 334.44748 * 14 13 11 40 40 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.37331 * 85.23825 * 23 8 6 42 42 H 1.09010 * 110.36246 * 322.92012 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3275 3.0576 0.0001 7 8 6.0150 2.0585 0.0001 8 7 5.9070 4.2744 0.0002 9 6 5.1968 5.5618 -0.0003 10 6 6.2657 6.6746 0.0260 11 6 7.5070 5.9506 0.6109 12 1 7.4609 5.9136 1.6994 13 7 8.7471 6.5886 0.1620 14 6 9.0394 6.6951 -1.2695 15 6 9.6329 7.0853 1.0806 16 1 9.6186 6.7201 2.0969 17 6 10.5490 8.0584 0.7056 18 7 10.4019 8.6955 -0.4367 19 14 11.9908 8.4637 1.8220 20 1 12.8199 7.2479 2.0208 21 1 12.8162 9.5285 1.1978 22 1 11.4826 8.9364 3.1350 23 6 7.3581 4.5350 -0.0003 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9768 -0.8908 30 1 3.8340 0.9767 0.8892 31 1 3.4228 3.4216 0.8905 32 1 3.4221 3.4226 -0.8894 33 1 4.5629 5.6357 0.8833 34 1 4.5896 5.6523 -0.9009 35 1 5.9547 7.4927 0.6757 36 1 6.4698 7.0372 -0.9815 37 1 8.7035 7.6645 -1.6378 38 1 10.1133 6.5980 -1.4292 39 1 8.5190 5.9022 -1.8067 40 1 11.0419 9.3758 -0.6986 41 1 7.7461 4.5189 -1.0188 42 1 7.8758 3.7995 0.6155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189302432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:16 Heat of formation + Delta-G solvation = -60.030259 kcal Electronic energy + Delta-G solvation = -20876.492371 eV Core-core repulsion = 17664.448194 eV Total energy + Delta-G solvation = -3212.044177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90236 -38.25320 -37.37548 -34.83285 -32.71325 -31.66019 -30.43967 -29.72305 -27.84717 -26.09577 -24.46896 -23.03645 -22.70778 -22.19652 -19.33315 -18.91659 -17.42161 -17.09957 -16.62262 -16.15985 -15.88113 -15.14120 -14.93154 -14.35810 -14.28610 -13.71299 -13.39052 -13.31858 -12.81432 -12.65478 -12.52673 -12.39541 -12.15334 -11.92935 -11.86958 -11.37512 -11.28943 -11.22137 -10.97266 -10.78992 -10.53071 -10.45930 -10.27678 -9.91966 -9.89634 -9.79674 -9.69178 -8.60443 -8.37349 -6.84477 -5.78405 -3.24480 2.75078 2.94416 3.36835 3.42514 3.43729 3.66653 4.45085 4.64212 4.76518 4.81681 4.89904 5.01293 5.02682 5.12864 5.27308 5.32347 5.34835 5.42754 5.52030 5.58953 5.59731 5.65322 5.71868 5.75551 5.82613 5.89659 6.00754 6.26244 6.37198 6.51843 6.61791 6.77061 6.85898 6.97560 7.32973 7.66484 7.74230 7.76075 8.28014 8.33489 9.16679 9.79110 10.27095 11.26503 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.052709 B = 0.003047 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.087674 B = 9186.522261 C = 9321.973848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.134 4.134 6 C 0.529 3.471 7 O -0.551 6.551 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.152 4.152 11 C 0.173 3.827 12 H 0.078 0.922 13 N -0.586 5.586 14 C 0.159 3.841 15 C -0.260 4.260 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.906 5.906 19 Si 0.907 3.093 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.084 3.916 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.002 0.998 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.899 -11.069 -0.278 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.174 4.174 6 C 0.317 3.683 7 O -0.430 6.430 8 N -0.345 5.345 9 C -0.023 4.023 10 C -0.193 4.193 11 C 0.062 3.938 12 H 0.096 0.904 13 N -0.306 5.306 14 C 0.014 3.986 15 C -0.390 4.390 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.550 5.550 19 Si 0.737 3.263 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.040 4.040 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.531 -11.344 -0.370 20.053 hybrid contribution 0.908 0.227 0.461 1.043 sum -15.623 -11.117 0.090 19.175 Atomic orbital electron populations 1.21746 0.93769 1.02187 1.03122 1.22443 0.95425 0.83698 1.00267 1.87804 1.21332 1.26643 1.95588 1.22116 0.80383 0.95594 1.01715 1.21427 0.92711 0.97771 1.05481 1.19964 0.89704 0.82056 0.76566 1.90698 1.65451 1.35737 1.51132 1.48472 1.08843 1.05237 1.71932 1.22102 0.95851 0.83401 1.00907 1.23249 0.96090 0.96784 1.03133 1.21407 0.86190 0.88934 0.97227 0.90386 1.43821 1.17138 1.66622 1.03036 1.20834 0.98910 0.96332 0.82482 1.19184 1.10608 1.16203 0.92977 0.91234 1.25001 1.00465 0.96440 0.97557 1.70067 1.36524 1.25652 1.22782 0.86295 0.82450 0.77649 0.79894 1.21006 1.21616 1.20882 1.22986 0.78969 0.99912 1.02093 0.91860 0.91149 0.91847 0.93338 0.93330 0.92446 0.92423 0.88198 0.88246 0.91715 0.91917 0.90458 0.90527 0.95001 0.93622 0.97960 0.93596 0.91150 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.46 10.34 -35.23 -0.36 -4.82 16 4 C 0.08 0.92 5.23 37.16 0.19 1.12 16 5 C -0.13 -1.55 5.26 -27.89 -0.15 -1.69 16 6 C 0.53 8.19 7.85 -10.99 -0.09 8.11 16 7 O -0.55 -10.46 16.24 5.56 0.09 -10.37 16 8 N -0.61 -9.59 3.33 -170.52 -0.57 -10.15 16 9 C 0.10 1.33 6.49 -3.06 -0.02 1.31 16 10 C -0.15 -2.49 6.54 -24.90 -0.16 -2.65 16 11 C 0.17 3.39 3.54 -65.78 -0.23 3.16 16 12 H 0.08 1.54 7.93 -51.93 -0.41 1.13 16 13 N -0.59 -14.15 2.96 -171.04 -0.51 -14.66 16 14 C 0.16 3.78 7.82 59.84 0.47 4.25 16 15 C -0.26 -6.96 9.63 -15.06 -0.15 -7.11 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 17 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 18 N -0.91 -25.76 10.67 55.49 0.59 -25.16 16 19 Si 0.91 21.51 29.58 -169.99 -5.03 16.49 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.08 1.55 6.45 -2.53 -0.02 1.53 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.35 7.28 -51.93 -0.38 0.97 16 37 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 38 H 0.05 1.18 7.22 -51.93 -0.38 0.81 16 39 H 0.00 0.04 6.03 -51.93 -0.31 -0.27 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.07 1.36 6.03 -51.93 -0.31 1.05 16 42 H 0.07 1.42 8.04 -51.92 -0.42 1.00 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -30.73 338.97 -7.49 -38.22 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -7.21 Total: -2.77 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 0.39 Total: 8.13 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.48 Total: -49.98 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.27 Total: -15.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.73 -7.49 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189302432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.812 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds