Wall clock time and date at job start Mon Mar 30 2020 01:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46587 * 2 1 4 4 C 1.42903 * 113.99731 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47446 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00155 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00165 * 179.97438 * 6 5 4 9 9 C 1.47029 * 125.64837 * 359.97438 * 8 6 5 10 10 C 1.54321 * 107.27030 * 178.98695 * 9 8 6 11 11 C 1.55152 * 102.94577 * 337.80748 * 10 9 8 12 12 H 1.09005 * 111.00591 * 277.38822 * 11 10 9 13 13 N 1.46506 * 111.00850 * 153.57553 * 11 10 9 14 14 C 1.46494 * 119.99803 * 301.45499 * 13 11 10 15 15 C 1.36934 * 120.00021 * 121.45409 * 13 11 10 16 16 H 1.08001 * 119.99952 * 21.72465 * 15 13 11 17 17 C 1.38808 * 120.00053 * 201.73044 * 15 13 11 18 18 N 1.31623 * 120.00217 * 13.62298 * 17 15 13 19 19 Si 1.86800 * 120.00106 * 193.62828 * 17 15 13 20 20 H 1.48493 * 109.47126 * 59.99715 * 19 17 15 21 21 H 1.48497 * 109.47309 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47243 * 299.99739 * 19 17 15 23 23 C 1.47426 * 125.65263 * 180.02562 * 8 6 5 24 24 H 1.08999 * 109.46948 * 60.00444 * 1 2 3 25 25 H 1.08999 * 109.46621 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47319 * 300.00221 * 1 2 3 27 27 H 1.09003 * 109.47762 * 240.00194 * 2 1 3 28 28 H 1.09001 * 109.47408 * 119.99324 * 2 1 3 29 29 H 1.08998 * 109.47264 * 59.99642 * 4 3 2 30 30 H 1.09000 * 109.47314 * 299.99507 * 4 3 2 31 31 H 1.08998 * 109.47331 * 59.99593 * 5 4 3 32 32 H 1.09004 * 109.47185 * 299.99878 * 5 4 3 33 33 H 1.09000 * 109.88066 * 59.57148 * 9 8 6 34 34 H 1.08994 * 110.00695 * 298.47341 * 9 8 6 35 35 H 1.09000 * 110.72010 * 219.44417 * 10 9 8 36 36 H 1.09003 * 110.72014 * 96.17139 * 10 9 8 37 37 H 1.09005 * 109.47201 * 94.44565 * 14 13 11 38 38 H 1.08997 * 109.47388 * 214.44171 * 14 13 11 39 39 H 1.08998 * 109.47814 * 334.44748 * 14 13 11 40 40 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.37331 * 85.23825 * 23 8 6 42 42 H 1.09010 * 110.36246 * 322.92012 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3275 3.0576 0.0001 7 8 6.0150 2.0585 0.0001 8 7 5.9070 4.2744 0.0002 9 6 5.1968 5.5618 -0.0003 10 6 6.2657 6.6746 0.0260 11 6 7.5070 5.9506 0.6109 12 1 7.4609 5.9136 1.6994 13 7 8.7471 6.5886 0.1620 14 6 9.0394 6.6951 -1.2695 15 6 9.6329 7.0853 1.0806 16 1 9.6186 6.7201 2.0969 17 6 10.5490 8.0584 0.7056 18 7 10.4019 8.6955 -0.4367 19 14 11.9908 8.4637 1.8220 20 1 12.8199 7.2479 2.0208 21 1 12.8162 9.5285 1.1978 22 1 11.4826 8.9364 3.1350 23 6 7.3581 4.5350 -0.0003 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9768 -0.8908 30 1 3.8340 0.9767 0.8892 31 1 3.4228 3.4216 0.8905 32 1 3.4221 3.4226 -0.8894 33 1 4.5629 5.6357 0.8833 34 1 4.5896 5.6523 -0.9009 35 1 5.9547 7.4927 0.6757 36 1 6.4698 7.0372 -0.9815 37 1 8.7035 7.6645 -1.6378 38 1 10.1133 6.5980 -1.4292 39 1 8.5190 5.9022 -1.8067 40 1 11.0419 9.3758 -0.6986 41 1 7.7461 4.5189 -1.0188 42 1 7.8758 3.7995 0.6155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189302432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:16 Heat of formation + Delta-G solvation = -79.485200 kcal Electronic energy + Delta-G solvation = -20877.336000 eV Core-core repulsion = 17664.448194 eV Total energy + Delta-G solvation = -3212.887806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17530 -39.27435 -38.64406 -36.56613 -33.76426 -33.21427 -31.54500 -30.96998 -29.28673 -28.08346 -25.83148 -24.22796 -23.66505 -23.43855 -20.95682 -20.10301 -18.96504 -18.48029 -17.69938 -17.31229 -17.11291 -16.50344 -16.25256 -15.73815 -15.27128 -15.08847 -14.88717 -14.58738 -14.39950 -14.21500 -13.73378 -13.42555 -13.17761 -12.98808 -12.96204 -12.82314 -12.69775 -12.49150 -12.38249 -12.13519 -12.11085 -12.02740 -12.00059 -11.83400 -11.44765 -11.00907 -10.63657 -10.59731 -9.68566 -8.81061 -7.84406 -5.32068 1.47193 1.50133 1.55214 1.56162 1.80863 2.50471 2.76369 3.28025 3.54060 3.59950 3.91579 3.92165 4.02009 4.14992 4.18358 4.21295 4.33787 4.39348 4.44539 4.47189 4.51545 4.67236 4.74556 4.79145 4.81952 4.91461 4.92957 5.02700 5.05884 5.19232 5.23605 5.29605 5.32324 5.41842 5.62983 5.70982 6.18764 6.30325 6.52573 7.06475 7.13139 7.83434 8.26929 9.18711 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.052709 B = 0.003047 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.087674 B = 9186.522261 C = 9321.973848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.082 3.918 5 C -0.122 4.122 6 C 0.527 3.473 7 O -0.593 6.593 8 N -0.612 5.612 9 C 0.108 3.892 10 C -0.143 4.143 11 C 0.165 3.835 12 H 0.075 0.925 13 N -0.603 5.603 14 C 0.177 3.823 15 C -0.268 4.268 16 H 0.071 0.929 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.273 1.273 23 C 0.096 3.904 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.011 0.989 38 H 0.015 0.985 39 H 0.028 0.972 40 H 0.249 0.751 41 H 0.058 0.942 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 -11.474 0.324 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.005 3.995 5 C -0.161 4.161 6 C 0.317 3.683 7 O -0.474 6.474 8 N -0.345 5.345 9 C -0.014 4.014 10 C -0.183 4.183 11 C 0.056 3.944 12 H 0.093 0.907 13 N -0.324 5.324 14 C 0.032 3.968 15 C -0.398 4.398 16 H 0.089 0.911 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.199 1.199 23 C -0.029 4.029 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.029 0.971 38 H 0.033 0.967 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.841 -11.761 0.248 22.212 hybrid contribution 1.556 0.260 0.285 1.603 sum -17.285 -11.502 0.533 20.769 Atomic orbital electron populations 1.21758 0.92318 1.03450 1.02942 1.22688 0.96634 0.82719 1.00779 1.87781 1.20696 1.28198 1.95623 1.22008 0.80842 0.95711 1.00974 1.21384 0.89199 0.98035 1.07487 1.20681 0.91256 0.81108 0.75242 1.90684 1.66748 1.37095 1.52889 1.48525 1.07605 1.06482 1.71909 1.22227 0.94799 0.80480 1.03938 1.23077 0.95286 0.97843 1.02089 1.21544 0.85922 0.89599 0.97295 0.90705 1.43979 1.18825 1.66945 1.02677 1.20524 0.97121 0.96102 0.83017 1.19502 1.11175 1.15665 0.93442 0.91080 1.25727 1.02866 0.96855 0.99038 1.70217 1.37190 1.26317 1.24355 0.85325 0.79448 0.77077 0.78475 1.20869 1.22045 1.19907 1.22595 0.81085 0.98509 1.00714 0.92013 0.89222 0.92001 0.92862 0.92857 0.93294 0.93276 0.86004 0.86077 0.88577 0.88955 0.89749 0.91824 0.97082 0.96654 0.95332 0.94178 0.92377 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.40 -8.21 10.34 -148.98 -1.54 -9.76 16 4 C 0.08 1.76 5.23 71.98 0.38 2.14 16 5 C -0.12 -2.42 5.26 29.84 0.16 -2.26 16 6 C 0.53 15.28 7.85 87.66 0.69 15.97 16 7 O -0.59 -22.19 16.24 -3.04 -0.05 -22.24 16 8 N -0.61 -17.85 3.33 -811.79 -2.70 -20.55 16 9 C 0.11 2.43 6.49 86.73 0.56 2.99 16 10 C -0.14 -4.39 6.54 31.78 0.21 -4.18 16 11 C 0.17 6.37 3.54 46.38 0.16 6.54 16 12 H 0.07 2.91 7.93 -2.38 -0.02 2.89 16 13 N -0.60 -29.39 2.96 -695.04 -2.06 -31.45 16 14 C 0.18 8.60 7.82 127.77 1.00 9.60 16 15 C -0.27 -14.45 9.63 84.03 0.81 -13.64 16 16 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 17 C -0.05 -2.73 5.08 84.86 0.43 -2.30 16 18 N -0.93 -54.27 10.67 21.65 0.23 -54.04 16 19 Si 0.97 44.64 29.58 68.60 2.03 46.67 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.10 3.48 6.45 86.85 0.56 4.04 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 2.14 7.28 -2.39 -0.02 2.12 16 37 H 0.01 0.57 7.41 -2.38 -0.02 0.56 16 38 H 0.01 0.80 7.22 -2.39 -0.02 0.78 16 39 H 0.03 1.20 6.03 -2.39 -0.01 1.19 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.06 2.24 6.03 -2.39 -0.01 2.23 16 42 H 0.05 2.15 8.04 -2.38 -0.02 2.13 16 Total: -1.00 -67.36 338.97 3.06 -64.30 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.98 Total: 7.91 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.17 Total: 19.16 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.53 Total: -106.04 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.59 Total: -32.00 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.36 3.06 -64.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189302432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.188 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds