Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.46895 * 2 1 4 4 C 1.42904 * 113.99509 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47379 * 330.00034 * 4 3 2 6 6 C 1.53002 * 109.47019 * 90.00190 * 4 3 2 7 7 C 1.50701 * 109.47101 * 209.99791 * 4 3 2 8 8 O 1.21289 * 119.99935 * 346.18008 * 7 4 3 9 9 N 1.34775 * 120.00333 * 166.17609 * 7 4 3 10 10 C 1.48210 * 119.96567 * 357.18850 * 9 7 4 11 11 C 1.47142 * 110.34295 * 102.47234 * 10 9 7 12 12 C 1.53799 * 111.84088 * 58.29522 * 11 10 9 13 13 N 1.43464 * 107.95719 * 281.66935 * 12 11 10 14 14 C 1.36936 * 118.94070 * 273.61003 * 13 12 11 15 15 H 1.08002 * 119.99897 * 27.38365 * 14 13 12 16 16 C 1.38810 * 120.00001 * 207.39058 * 14 13 12 17 17 N 1.31625 * 119.99719 * 201.22365 * 16 14 13 18 18 Si 1.86794 * 120.00198 * 21.21901 * 16 14 13 19 19 H 1.48497 * 109.47202 * 273.18090 * 18 16 14 20 20 H 1.48505 * 109.47303 * 153.18227 * 18 16 14 21 21 H 1.48501 * 109.47260 * 33.18238 * 18 16 14 22 22 C 1.48860 * 122.12084 * 93.88976 * 13 12 11 23 23 C 1.43616 * 119.97001 * 177.17083 * 9 7 4 24 24 H 1.09000 * 109.47209 * 299.99921 * 1 2 3 25 25 H 1.08997 * 109.47237 * 60.00460 * 1 2 3 26 26 H 1.09005 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46797 * 239.99812 * 2 1 3 28 28 H 1.09005 * 109.46832 * 120.00050 * 2 1 3 29 29 H 1.09005 * 109.47431 * 73.66489 * 6 4 3 30 30 H 1.08997 * 109.46881 * 193.66135 * 6 4 3 31 31 H 1.09002 * 109.47093 * 313.66555 * 6 4 3 32 32 H 1.09002 * 109.33182 * 342.20269 * 10 9 7 33 33 H 1.09005 * 109.18435 * 222.64523 * 10 9 7 34 34 H 1.09000 * 109.00433 * 297.69198 * 11 10 9 35 35 H 1.08997 * 109.01018 * 178.90122 * 11 10 9 36 36 H 1.08993 * 109.76456 * 162.05342 * 12 11 10 37 37 H 1.08999 * 109.80393 * 41.30401 * 12 11 10 38 38 H 0.97003 * 119.99829 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.47920 * 80.34605 * 22 13 12 40 40 H 1.09002 * 109.48104 * 200.37621 * 22 13 12 41 41 H 1.09002 * 108.87773 * 31.46603 * 23 9 7 42 42 H 1.09002 * 108.87433 * 149.90822 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.8631 0.6016 0.5147 6 6 3.9398 1.5001 -1.4417 7 6 3.8342 2.7264 0.7109 8 8 3.0047 3.5787 0.9490 9 7 5.1166 2.9119 1.0818 10 6 6.1171 1.8441 0.8467 11 6 6.9480 2.1702 -0.3231 12 6 7.6755 3.5143 -0.1514 13 7 6.7331 4.5639 -0.4129 14 6 6.5472 4.9811 -1.7038 15 1 6.7232 4.2989 -2.5224 16 6 6.1327 6.2808 -1.9603 17 7 5.5591 6.5742 -3.1081 18 14 6.3889 7.6134 -0.6766 19 1 5.2384 7.6242 0.2621 20 1 6.4925 8.9340 -1.3479 21 1 7.6396 7.3415 0.0764 22 6 5.9553 5.2183 0.6747 23 6 5.5124 4.1443 1.7040 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.7113 2.4712 -1.8809 30 1 5.0182 1.3420 -1.4509 31 1 3.4526 0.7157 -2.0209 32 1 5.6022 0.8995 0.6713 33 1 6.7539 1.7498 1.7263 34 1 6.3122 2.2211 -1.2070 35 1 7.6874 1.3819 -0.4643 36 1 8.5035 3.5780 -0.8573 37 1 8.0523 3.6027 0.8676 38 1 5.2698 7.4825 -3.2875 39 1 6.5777 5.9647 1.1682 40 1 5.0745 5.7014 0.2516 41 1 4.6734 4.5334 2.2810 42 1 6.3425 3.9463 2.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194954567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = -41.097504 kcal Electronic energy + Delta-G solvation = -22823.576901 eV Core-core repulsion = 19612.353710 eV Total energy + Delta-G solvation = -3211.223191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14046 -37.99958 -36.84922 -34.55022 -32.77126 -32.10026 -31.33677 -29.96261 -27.87809 -25.95759 -24.51699 -23.15509 -22.69101 -22.09318 -19.95936 -18.62507 -17.35065 -16.81206 -16.62726 -15.72852 -15.52456 -15.24045 -14.64065 -14.47429 -13.91131 -13.64149 -13.30776 -13.27727 -12.97270 -12.65259 -12.49268 -12.32199 -12.19841 -11.89697 -11.80729 -11.49302 -11.34163 -11.20297 -11.06267 -10.87868 -10.51314 -10.28894 -10.02184 -9.90359 -9.70474 -9.48851 -9.06305 -8.55728 -8.15961 -6.90592 -5.91241 -3.27646 2.99095 3.14687 3.40581 3.51265 3.54139 3.96008 4.58995 4.69724 4.81712 4.96294 4.96627 5.13297 5.21881 5.27523 5.29726 5.43323 5.45157 5.53291 5.58154 5.69118 5.81174 5.84168 5.88376 5.91406 6.01740 6.08118 6.12015 6.20286 6.24876 6.44588 6.51047 6.65650 6.75942 6.87343 7.08182 7.24233 7.77720 8.04073 8.38529 8.65526 9.01856 9.78195 10.11214 11.24783 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.006527 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.869378 B = 4288.574059 C = 4603.257038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.078 3.922 5 H 0.076 0.924 6 C -0.175 4.175 7 C 0.520 3.480 8 O -0.524 6.524 9 N -0.586 5.586 10 C 0.120 3.880 11 C -0.184 4.184 12 C 0.164 3.836 13 N -0.600 5.600 14 C -0.267 4.267 15 H 0.083 0.917 16 C 0.029 3.971 17 N -0.905 5.905 18 Si 0.882 3.118 19 H -0.285 1.285 20 H -0.305 1.305 21 H -0.276 1.276 22 C 0.107 3.893 23 C 0.104 3.896 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 -15.354 8.645 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.016 3.984 5 H 0.093 0.907 6 C -0.232 4.232 7 C 0.307 3.693 8 O -0.399 6.399 9 N -0.319 5.319 10 C -0.002 4.002 11 C -0.224 4.224 12 C 0.036 3.964 13 N -0.322 5.322 14 C -0.395 4.395 15 H 0.100 0.900 16 C -0.171 4.171 17 N -0.547 5.547 18 Si 0.713 3.287 19 H -0.212 1.212 20 H -0.233 1.233 21 H -0.202 1.202 22 C -0.018 4.018 23 C -0.021 4.021 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.689 -14.603 8.681 17.072 hybrid contribution 0.379 0.606 0.505 0.875 sum -1.309 -13.997 9.186 16.794 Atomic orbital electron populations 1.21719 0.93647 1.01892 1.03465 1.22544 0.95825 0.84074 0.99776 1.88074 1.19000 1.25685 1.94980 1.21902 0.82909 0.96267 0.97283 0.90654 1.22411 1.02239 1.04392 0.94180 1.20182 0.82218 0.88271 0.78638 1.90685 1.50436 1.44915 1.53829 1.47256 1.07614 1.16469 1.60601 1.20826 0.90918 0.89374 0.99109 1.22117 1.00139 1.00816 0.99355 1.20289 0.91271 0.86660 0.98173 1.43953 1.43199 1.41029 1.04053 1.18819 1.42969 0.95037 0.82669 0.89978 1.25272 0.98722 0.97286 0.95799 1.69857 1.40339 1.19965 1.24553 0.87030 0.78518 0.81774 0.81408 1.21217 1.23294 1.20167 1.22611 0.95728 0.93652 0.89842 1.21635 0.99739 0.85417 0.95288 0.91797 0.91647 0.91268 0.93305 0.93648 0.90262 0.89927 0.91858 0.91144 0.91373 0.89889 0.92076 0.92651 0.94615 0.92833 0.94970 0.90582 0.90537 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.05 0.64 6.44 37.16 0.24 0.88 16 3 O -0.36 -6.02 9.56 -54.75 -0.52 -6.55 16 4 C 0.08 1.22 2.30 -27.88 -0.06 1.16 16 5 H 0.08 0.92 6.23 -51.93 -0.32 0.60 16 6 C -0.17 -2.73 9.17 37.16 0.34 -2.39 16 7 C 0.52 10.17 6.93 -10.99 -0.08 10.10 16 8 O -0.52 -12.60 16.08 -13.97 -0.22 -12.82 16 9 N -0.59 -10.18 2.46 -176.43 -0.43 -10.61 16 10 C 0.12 1.58 5.06 -5.91 -0.03 1.55 16 11 C -0.18 -2.73 5.30 -29.13 -0.15 -2.89 16 12 C 0.16 2.98 5.63 -5.23 -0.03 2.95 16 13 N -0.60 -13.80 2.29 -171.78 -0.39 -14.20 16 14 C -0.27 -7.35 9.67 -15.06 -0.15 -7.50 16 15 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 16 C 0.03 0.84 5.16 -17.43 -0.09 0.75 16 17 N -0.90 -28.28 13.97 55.49 0.78 -27.51 16 18 Si 0.88 23.02 24.02 -169.99 -4.08 18.93 16 19 H -0.29 -7.36 6.46 56.52 0.37 -6.99 16 20 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 21 H -0.28 -6.97 6.84 56.52 0.39 -6.58 16 22 C 0.11 2.41 4.50 -1.56 -0.01 2.40 16 23 C 0.10 1.91 5.28 -4.40 -0.02 1.88 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.50 7.71 -51.93 -0.40 0.10 16 28 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.08 1.57 8.06 -51.93 -0.42 1.15 16 30 H 0.08 1.20 4.31 -51.93 -0.22 0.97 16 31 H 0.06 0.83 7.69 -51.93 -0.40 0.43 16 32 H 0.07 0.76 5.47 -51.93 -0.28 0.48 16 33 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.08 1.46 5.20 -51.93 -0.27 1.19 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.03 8.02 -51.93 -0.42 0.61 16 37 H 0.04 0.58 7.59 -51.93 -0.39 0.18 16 38 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 39 H 0.03 0.72 5.97 -51.93 -0.31 0.41 16 40 H 0.08 2.00 5.60 -51.93 -0.29 1.71 16 41 H 0.08 1.43 7.33 -51.93 -0.38 1.05 16 42 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -34.79 316.49 -6.42 -41.22 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.65 Total: -0.97 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.34 Total: 7.73 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.05 Total: -52.32 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.75 Total: -19.37 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.08 Total: 18.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.79 -6.42 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194954567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.120 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds