Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.46895 * 2 1 4 4 C 1.42904 * 113.99509 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47379 * 330.00034 * 4 3 2 6 6 C 1.53002 * 109.47019 * 90.00190 * 4 3 2 7 7 C 1.50701 * 109.47101 * 209.99791 * 4 3 2 8 8 O 1.21289 * 119.99935 * 346.18008 * 7 4 3 9 9 N 1.34775 * 120.00333 * 166.17609 * 7 4 3 10 10 C 1.48210 * 119.96567 * 357.18850 * 9 7 4 11 11 C 1.47142 * 110.34295 * 102.47234 * 10 9 7 12 12 C 1.53799 * 111.84088 * 58.29522 * 11 10 9 13 13 N 1.43464 * 107.95719 * 281.66935 * 12 11 10 14 14 C 1.36936 * 118.94070 * 273.61003 * 13 12 11 15 15 H 1.08002 * 119.99897 * 27.38365 * 14 13 12 16 16 C 1.38810 * 120.00001 * 207.39058 * 14 13 12 17 17 N 1.31625 * 119.99719 * 201.22365 * 16 14 13 18 18 Si 1.86794 * 120.00198 * 21.21901 * 16 14 13 19 19 H 1.48497 * 109.47202 * 273.18090 * 18 16 14 20 20 H 1.48505 * 109.47303 * 153.18227 * 18 16 14 21 21 H 1.48501 * 109.47260 * 33.18238 * 18 16 14 22 22 C 1.48860 * 122.12084 * 93.88976 * 13 12 11 23 23 C 1.43616 * 119.97001 * 177.17083 * 9 7 4 24 24 H 1.09000 * 109.47209 * 299.99921 * 1 2 3 25 25 H 1.08997 * 109.47237 * 60.00460 * 1 2 3 26 26 H 1.09005 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46797 * 239.99812 * 2 1 3 28 28 H 1.09005 * 109.46832 * 120.00050 * 2 1 3 29 29 H 1.09005 * 109.47431 * 73.66489 * 6 4 3 30 30 H 1.08997 * 109.46881 * 193.66135 * 6 4 3 31 31 H 1.09002 * 109.47093 * 313.66555 * 6 4 3 32 32 H 1.09002 * 109.33182 * 342.20269 * 10 9 7 33 33 H 1.09005 * 109.18435 * 222.64523 * 10 9 7 34 34 H 1.09000 * 109.00433 * 297.69198 * 11 10 9 35 35 H 1.08997 * 109.01018 * 178.90122 * 11 10 9 36 36 H 1.08993 * 109.76456 * 162.05342 * 12 11 10 37 37 H 1.08999 * 109.80393 * 41.30401 * 12 11 10 38 38 H 0.97003 * 119.99829 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.47920 * 80.34605 * 22 13 12 40 40 H 1.09002 * 109.48104 * 200.37621 * 22 13 12 41 41 H 1.09002 * 108.87773 * 31.46603 * 23 9 7 42 42 H 1.09002 * 108.87433 * 149.90822 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.8631 0.6016 0.5147 6 6 3.9398 1.5001 -1.4417 7 6 3.8342 2.7264 0.7109 8 8 3.0047 3.5787 0.9490 9 7 5.1166 2.9119 1.0818 10 6 6.1171 1.8441 0.8467 11 6 6.9480 2.1702 -0.3231 12 6 7.6755 3.5143 -0.1514 13 7 6.7331 4.5639 -0.4129 14 6 6.5472 4.9811 -1.7038 15 1 6.7232 4.2989 -2.5224 16 6 6.1327 6.2808 -1.9603 17 7 5.5591 6.5742 -3.1081 18 14 6.3889 7.6134 -0.6766 19 1 5.2384 7.6242 0.2621 20 1 6.4925 8.9340 -1.3479 21 1 7.6396 7.3415 0.0764 22 6 5.9553 5.2183 0.6747 23 6 5.5124 4.1443 1.7040 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.7113 2.4712 -1.8809 30 1 5.0182 1.3420 -1.4509 31 1 3.4526 0.7157 -2.0209 32 1 5.6022 0.8995 0.6713 33 1 6.7539 1.7498 1.7263 34 1 6.3122 2.2211 -1.2070 35 1 7.6874 1.3819 -0.4643 36 1 8.5035 3.5780 -0.8573 37 1 8.0523 3.6027 0.8676 38 1 5.2698 7.4825 -3.2875 39 1 6.5777 5.9647 1.1682 40 1 5.0745 5.7014 0.2516 41 1 4.6734 4.5334 2.2810 42 1 6.3425 3.9463 2.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194954567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = -66.268574 kcal Electronic energy + Delta-G solvation = -22824.668400 eV Core-core repulsion = 19612.353710 eV Total energy + Delta-G solvation = -3212.314690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52549 -39.27453 -38.35136 -36.22382 -34.07993 -33.81137 -32.87454 -31.09661 -29.50728 -27.50169 -26.03108 -24.71953 -23.80472 -23.33052 -21.63494 -19.95373 -18.89997 -18.33180 -18.08628 -17.21799 -16.87548 -16.69969 -16.12987 -15.99181 -15.46882 -15.05736 -14.95154 -14.73200 -14.25406 -14.08146 -13.88379 -13.71831 -13.52052 -13.24145 -13.14526 -12.92690 -12.86502 -12.52246 -12.31434 -12.21786 -12.04114 -11.89444 -11.84920 -11.58791 -11.34811 -10.85221 -10.70731 -10.42050 -9.61816 -8.84518 -8.17593 -5.47041 1.29501 1.33683 1.42916 1.56741 1.90061 2.41895 2.86285 3.03994 3.42709 3.45649 3.73238 3.98893 4.06839 4.13414 4.16253 4.20725 4.32985 4.38100 4.47404 4.50167 4.57293 4.64116 4.72396 4.73682 4.85231 4.90218 4.94561 4.98264 5.01446 5.02573 5.18619 5.26079 5.27397 5.59361 5.78329 5.90890 6.14263 6.16354 6.46283 6.99433 7.23153 7.68350 8.05362 9.02474 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.006527 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.869378 B = 4288.574059 C = 4603.257038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.398 6.398 4 C 0.084 3.916 5 H 0.125 0.875 6 C -0.165 4.165 7 C 0.504 3.496 8 O -0.586 6.586 9 N -0.585 5.585 10 C 0.112 3.888 11 C -0.174 4.174 12 C 0.151 3.849 13 N -0.608 5.608 14 C -0.238 4.238 15 H 0.054 0.946 16 C -0.038 4.038 17 N -0.958 5.958 18 Si 0.941 3.059 19 H -0.289 1.289 20 H -0.314 1.314 21 H -0.255 1.255 22 C 0.105 3.895 23 C 0.110 3.890 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.256 0.744 39 H 0.041 0.959 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -18.858 11.189 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.318 6.318 4 C 0.024 3.976 5 H 0.142 0.858 6 C -0.223 4.223 7 C 0.293 3.707 8 O -0.466 6.466 9 N -0.317 5.317 10 C -0.008 4.008 11 C -0.214 4.214 12 C 0.025 3.975 13 N -0.332 5.332 14 C -0.368 4.368 15 H 0.072 0.928 16 C -0.233 4.233 17 N -0.605 5.605 18 Si 0.771 3.229 19 H -0.216 1.216 20 H -0.243 1.243 21 H -0.179 1.179 22 C -0.021 4.021 23 C -0.016 4.016 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.224 -18.182 11.272 21.394 hybrid contribution -0.170 1.551 -0.304 1.590 sum 0.054 -16.631 10.968 19.922 Atomic orbital electron populations 1.21774 0.93192 1.03585 1.02197 1.22887 0.96354 0.82146 1.01747 1.88057 1.19540 1.29030 1.95150 1.21920 0.83139 0.95828 0.96760 0.85783 1.22342 1.03487 1.01922 0.94505 1.21098 0.82534 0.89059 0.78025 1.90647 1.52404 1.47176 1.56325 1.47514 1.07855 1.16906 1.59389 1.21241 0.90510 0.89095 0.99969 1.21946 1.00572 1.00000 0.98858 1.20651 0.90472 0.86487 0.99881 1.44080 1.44705 1.42096 1.02323 1.18809 1.39628 0.93950 0.84381 0.92811 1.25908 1.00016 0.99717 0.97633 1.69996 1.43482 1.19915 1.27096 0.86064 0.78889 0.78789 0.79145 1.21640 1.24343 1.17910 1.22539 0.93855 0.95274 0.90392 1.21526 1.00880 0.84875 0.94283 0.92980 0.93055 0.88030 0.91448 0.91286 0.96031 0.88478 0.89232 0.87857 0.87283 0.93151 0.87635 0.93420 0.91202 0.93486 0.94190 0.95653 0.91704 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 10.28 71.98 0.74 -2.12 16 2 C 0.04 0.92 6.44 71.98 0.46 1.38 16 3 O -0.40 -13.01 9.56 -130.32 -1.25 -14.26 16 4 C 0.08 2.48 2.30 29.85 0.07 2.55 16 5 H 0.12 2.39 6.23 -2.39 -0.01 2.37 16 6 C -0.17 -5.00 9.17 71.98 0.66 -4.34 16 7 C 0.50 19.38 6.93 87.66 0.61 19.98 16 8 O -0.59 -29.20 16.08 15.61 0.25 -28.95 16 9 N -0.58 -18.71 2.46 -830.49 -2.04 -20.75 16 10 C 0.11 2.32 5.06 84.23 0.43 2.75 16 11 C -0.17 -4.40 5.30 29.04 0.15 -4.25 16 12 C 0.15 4.95 5.63 87.21 0.49 5.44 16 13 N -0.61 -27.43 2.29 -697.38 -1.60 -29.03 16 14 C -0.24 -13.44 9.67 84.03 0.81 -12.63 16 15 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 16 C -0.04 -2.34 5.16 84.86 0.44 -1.90 16 17 N -0.96 -63.25 13.97 21.65 0.30 -62.95 16 18 Si 0.94 49.30 24.02 68.60 1.65 50.95 16 19 H -0.29 -15.15 6.46 99.48 0.64 -14.51 16 20 H -0.31 -16.78 7.11 99.48 0.71 -16.07 16 21 H -0.25 -12.26 6.84 99.48 0.68 -11.58 16 22 C 0.11 4.64 4.50 86.68 0.39 5.03 16 23 C 0.11 3.75 5.28 87.67 0.46 4.21 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.07 1.14 7.71 -2.39 -0.02 1.12 16 28 H 0.07 1.10 8.08 -2.38 -0.02 1.08 16 29 H 0.02 0.87 8.06 -2.38 -0.02 0.85 16 30 H 0.10 2.60 4.31 -2.39 -0.01 2.59 16 31 H 0.09 2.18 7.69 -2.39 -0.02 2.16 16 32 H 0.10 1.53 5.47 -2.39 -0.01 1.52 16 33 H 0.11 1.53 8.05 -2.38 -0.02 1.51 16 34 H 0.05 1.65 5.20 -2.39 -0.01 1.64 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 37 H 0.07 1.86 7.59 -2.39 -0.02 1.84 16 38 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 39 H 0.04 1.70 5.97 -2.38 -0.01 1.69 16 40 H 0.02 1.37 5.60 -2.39 -0.01 1.35 16 41 H 0.06 2.39 7.33 -2.39 -0.02 2.37 16 42 H 0.11 2.78 7.73 -2.39 -0.02 2.76 16 Total: -1.00 -84.47 316.49 3.94 -80.53 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.91 Total: 8.34 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 5.71 Total: 16.11 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.34 Total: -112.73 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.99 Total: -43.20 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.65 Total: 50.95 kcal Total: -84.47 3.94 -80.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194954567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.263 kcal (2) G-P(sol) polarization free energy of solvation -84.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds