Wall clock time and date at job start Mon Mar 30 2020 01:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42896 * 109.47079 * 2 1 4 4 C 1.42903 * 113.99546 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47408 * 29.99826 * 4 3 2 6 6 C 1.53001 * 109.46947 * 269.99636 * 4 3 2 7 7 C 1.50698 * 109.46837 * 150.00029 * 4 3 2 8 8 O 1.21276 * 120.00564 * 4.99982 * 7 4 3 9 9 N 1.34784 * 119.99966 * 184.99680 * 7 4 3 10 10 C 1.46919 * 120.63188 * 179.97438 * 9 7 4 11 11 C 1.53195 * 108.89273 * 233.51696 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 N 1.46499 * 109.45427 * 181.24460 * 12 11 10 14 14 C 1.36928 * 120.00250 * 84.79108 * 13 12 11 15 15 H 1.08000 * 120.00193 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00515 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99431 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00596 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47181 * 89.99406 * 18 16 14 20 20 H 1.48496 * 109.47380 * 209.99676 * 18 16 14 21 21 H 1.48503 * 109.46510 * 329.99402 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 23 23 C 1.46928 * 120.62829 * 359.97438 * 9 7 4 24 24 H 1.08999 * 109.47052 * 300.00207 * 1 2 3 25 25 H 1.09006 * 109.46710 * 59.99989 * 1 2 3 26 26 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47052 * 239.99793 * 2 1 3 28 28 H 1.08997 * 109.46300 * 120.00425 * 2 1 3 29 29 H 1.08994 * 109.47222 * 300.00304 * 6 4 3 30 30 H 1.09005 * 109.46941 * 60.00400 * 6 4 3 31 31 H 1.09000 * 109.47074 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.58751 * 353.37646 * 10 9 7 33 33 H 1.08996 * 109.58750 * 113.65831 * 10 9 7 34 34 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 35 35 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 36 36 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 37 37 H 0.97007 * 119.99658 * 264.78640 * 13 12 11 38 38 H 0.97006 * 119.99397 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.49876 * 178.74890 * 22 12 11 40 40 H 1.09005 * 109.52615 * 58.67140 * 22 12 11 41 41 H 1.08998 * 109.58787 * 246.20220 * 23 9 7 42 42 H 1.09007 * 109.58600 * 6.48533 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8632 0.6016 -0.5147 6 6 3.9400 1.5001 1.4417 7 6 3.8343 2.7263 -0.7110 8 8 2.9858 3.5048 -1.0915 9 7 5.1381 2.9939 -0.9234 10 6 5.5469 4.2240 -1.6150 11 6 6.4596 3.8535 -2.7883 12 6 7.6229 3.0014 -2.2748 13 7 8.5141 2.6700 -3.3893 14 6 9.4924 3.5497 -3.7686 15 1 9.6068 4.4882 -3.2465 16 6 10.3365 3.2359 -4.8250 17 7 10.1968 2.0924 -5.4617 18 14 11.6707 4.4364 -5.3430 19 1 12.9162 4.1484 -4.5873 20 1 11.9297 4.2911 -6.7979 21 1 11.2267 5.8240 -5.0554 22 6 7.0815 1.7117 -1.6539 23 6 6.1777 2.0608 -0.4678 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5077 2.3585 1.9558 30 1 3.6482 0.5841 1.9556 31 1 5.0266 1.5856 1.4413 32 1 4.6645 4.7437 -1.9884 33 1 6.0861 4.8705 -0.9227 34 1 5.8922 3.2849 -3.5252 35 1 6.8470 4.7623 -3.2490 36 1 8.1766 3.5623 -1.5218 37 1 8.4111 1.8272 -3.8585 38 1 10.7869 1.8730 -6.1997 39 1 7.9130 1.0969 -1.3092 40 1 6.5070 1.1616 -2.3993 41 1 6.7705 2.5294 0.3176 42 1 5.7113 1.1542 -0.0820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199421660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:24 Heat of formation + Delta-G solvation = -72.014642 kcal Electronic energy + Delta-G solvation = -21438.662280 eV Core-core repulsion = 18226.098422 eV Total energy + Delta-G solvation = -3212.563858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35718 -38.24162 -37.08172 -34.60047 -32.94573 -31.88493 -30.97867 -30.02463 -29.11474 -25.52337 -24.19480 -23.08729 -22.79980 -22.30774 -20.32367 -19.01747 -17.44240 -17.19178 -16.70634 -16.04301 -15.66978 -14.98038 -14.83329 -14.33134 -13.94971 -13.75910 -13.60882 -13.52179 -13.17795 -12.92665 -12.69637 -12.51065 -12.32371 -12.28517 -11.78464 -11.58101 -11.48186 -11.26421 -10.94231 -10.92010 -10.82264 -10.44876 -10.26447 -10.05794 -9.87232 -9.70816 -9.39073 -8.92969 -8.50828 -7.00498 -5.80320 -3.09491 2.66334 2.75801 3.41158 3.46710 3.48257 3.67266 4.38600 4.55177 4.64761 4.73951 4.87061 4.93256 5.00243 5.10743 5.14033 5.24363 5.32119 5.41423 5.43169 5.51161 5.56468 5.59175 5.66707 5.75579 5.85663 5.87759 5.89856 5.96436 6.19047 6.25041 6.42026 6.52534 6.55773 6.86411 6.95485 7.02554 7.48805 7.66497 8.25534 8.38046 9.49358 10.06230 10.40844 11.42267 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038560 B = 0.003564 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.967026 B = 7855.005763 C = 7987.933496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.178 4.178 7 C 0.515 3.485 8 O -0.528 6.528 9 N -0.604 5.604 10 C 0.114 3.886 11 C -0.150 4.150 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.141 4.141 23 C 0.105 3.895 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 -5.158 14.294 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.010 3.990 5 H 0.103 0.897 6 C -0.235 4.235 7 C 0.302 3.698 8 O -0.403 6.403 9 N -0.339 5.339 10 C -0.009 4.009 11 C -0.191 4.191 12 C 0.069 3.931 13 N -0.365 5.365 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.180 4.180 23 C -0.019 4.019 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.917 -4.439 14.050 20.268 hybrid contribution 1.012 0.031 -0.594 1.174 sum -12.905 -4.408 13.456 19.158 Atomic orbital electron populations 1.21726 0.93477 1.02150 1.03392 1.22591 0.95932 0.83659 1.00111 1.88047 1.18497 1.26202 1.94951 1.21863 0.83509 0.96883 0.96731 0.89654 1.22416 1.02434 1.03645 0.95025 1.20297 0.82328 0.87549 0.79645 1.90688 1.49752 1.49093 1.50786 1.48097 1.04986 1.22985 1.57835 1.21704 0.99367 0.85198 0.94596 1.22674 0.97618 1.02129 0.96665 1.20166 0.89868 0.92384 0.90708 1.42425 1.35863 1.21967 1.36212 1.19231 1.07210 0.98848 1.11791 0.91147 1.24751 0.99971 0.97405 0.98809 1.69666 1.40912 1.22788 1.24744 0.86198 0.82031 0.80373 0.77640 1.21722 1.21789 1.20736 1.22225 0.98927 0.99795 0.97074 1.21978 0.89714 0.92784 0.97386 0.91814 0.91636 0.91061 0.93173 0.93255 0.91104 0.91326 0.90092 0.89662 0.91714 0.92290 0.90607 0.93371 0.78296 0.93498 0.90347 0.91741 0.90926 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.05 0.50 6.47 37.16 0.24 0.74 16 3 O -0.36 -4.73 9.53 -55.09 -0.52 -5.26 16 4 C 0.07 0.84 2.30 -27.88 -0.06 0.77 16 5 H 0.09 0.84 7.08 -51.93 -0.37 0.48 16 6 C -0.18 -1.58 9.10 37.16 0.34 -1.24 16 7 C 0.52 7.87 7.12 -10.98 -0.08 7.79 16 8 O -0.53 -10.23 15.92 -14.30 -0.23 -10.46 16 9 N -0.60 -8.48 2.97 -172.79 -0.51 -9.00 16 10 C 0.11 1.73 6.43 -3.71 -0.02 1.71 16 11 C -0.15 -2.65 5.67 -26.59 -0.15 -2.80 16 12 C 0.18 3.33 2.73 -67.87 -0.19 3.15 16 13 N -0.72 -17.51 5.12 -53.37 -0.27 -17.78 16 14 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.14 -2.08 5.55 -26.63 -0.15 -2.23 16 23 C 0.10 1.21 4.97 -3.73 -0.02 1.19 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.05 0.36 7.87 -51.93 -0.41 -0.04 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.08 0.62 5.41 -51.93 -0.28 0.34 16 32 H 0.08 1.39 7.01 -51.93 -0.36 1.02 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.74 4.66 -51.92 -0.24 0.50 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -32.97 334.93 -7.75 -40.72 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.00 Total: 5.57 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 0.05 Total: 1.15 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.06 Total: -53.84 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.75 Total: -15.72 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.97 -7.75 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199421660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.296 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds