Wall clock time and date at job start Mon Mar 30 2020 01:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42896 * 109.47079 * 2 1 4 4 C 1.42903 * 113.99546 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47408 * 29.99826 * 4 3 2 6 6 C 1.53001 * 109.46947 * 269.99636 * 4 3 2 7 7 C 1.50698 * 109.46837 * 150.00029 * 4 3 2 8 8 O 1.21276 * 120.00564 * 4.99982 * 7 4 3 9 9 N 1.34784 * 119.99966 * 184.99680 * 7 4 3 10 10 C 1.46919 * 120.63188 * 179.97438 * 9 7 4 11 11 C 1.53195 * 108.89273 * 233.51696 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 N 1.46499 * 109.45427 * 181.24460 * 12 11 10 14 14 C 1.36928 * 120.00250 * 84.79108 * 13 12 11 15 15 H 1.08000 * 120.00193 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00515 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99431 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00596 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47181 * 89.99406 * 18 16 14 20 20 H 1.48496 * 109.47380 * 209.99676 * 18 16 14 21 21 H 1.48503 * 109.46510 * 329.99402 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 23 23 C 1.46928 * 120.62829 * 359.97438 * 9 7 4 24 24 H 1.08999 * 109.47052 * 300.00207 * 1 2 3 25 25 H 1.09006 * 109.46710 * 59.99989 * 1 2 3 26 26 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47052 * 239.99793 * 2 1 3 28 28 H 1.08997 * 109.46300 * 120.00425 * 2 1 3 29 29 H 1.08994 * 109.47222 * 300.00304 * 6 4 3 30 30 H 1.09005 * 109.46941 * 60.00400 * 6 4 3 31 31 H 1.09000 * 109.47074 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.58751 * 353.37646 * 10 9 7 33 33 H 1.08996 * 109.58750 * 113.65831 * 10 9 7 34 34 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 35 35 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 36 36 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 37 37 H 0.97007 * 119.99658 * 264.78640 * 13 12 11 38 38 H 0.97006 * 119.99397 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.49876 * 178.74890 * 22 12 11 40 40 H 1.09005 * 109.52615 * 58.67140 * 22 12 11 41 41 H 1.08998 * 109.58787 * 246.20220 * 23 9 7 42 42 H 1.09007 * 109.58600 * 6.48533 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8632 0.6016 -0.5147 6 6 3.9400 1.5001 1.4417 7 6 3.8343 2.7263 -0.7110 8 8 2.9858 3.5048 -1.0915 9 7 5.1381 2.9939 -0.9234 10 6 5.5469 4.2240 -1.6150 11 6 6.4596 3.8535 -2.7883 12 6 7.6229 3.0014 -2.2748 13 7 8.5141 2.6700 -3.3893 14 6 9.4924 3.5497 -3.7686 15 1 9.6068 4.4882 -3.2465 16 6 10.3365 3.2359 -4.8250 17 7 10.1968 2.0924 -5.4617 18 14 11.6707 4.4364 -5.3430 19 1 12.9162 4.1484 -4.5873 20 1 11.9297 4.2911 -6.7979 21 1 11.2267 5.8240 -5.0554 22 6 7.0815 1.7117 -1.6539 23 6 6.1777 2.0608 -0.4678 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5077 2.3585 1.9558 30 1 3.6482 0.5841 1.9556 31 1 5.0266 1.5856 1.4413 32 1 4.6645 4.7437 -1.9884 33 1 6.0861 4.8705 -0.9227 34 1 5.8922 3.2849 -3.5252 35 1 6.8470 4.7623 -3.2490 36 1 8.1766 3.5623 -1.5218 37 1 8.4111 1.8272 -3.8585 38 1 10.7869 1.8730 -6.1997 39 1 7.9130 1.0969 -1.3092 40 1 6.5070 1.1616 -2.3993 41 1 6.7705 2.5294 0.3176 42 1 5.7113 1.1542 -0.0820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199421660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:23 Heat of formation + Delta-G solvation = -93.921501 kcal Electronic energy + Delta-G solvation = -21439.612233 eV Core-core repulsion = 18226.098422 eV Total energy + Delta-G solvation = -3213.513811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48848 -39.27914 -38.33621 -36.21822 -34.18912 -33.31307 -32.01844 -31.21539 -30.52195 -26.90425 -25.57305 -24.16538 -23.99359 -23.43409 -21.63126 -20.27310 -19.11063 -18.42864 -17.77293 -17.05256 -16.77189 -16.48695 -16.04247 -15.53942 -15.39598 -15.36979 -14.94180 -14.61302 -14.22989 -14.10820 -13.81298 -13.48676 -13.27007 -13.15891 -13.08150 -12.86124 -12.76494 -12.54731 -12.27248 -12.20005 -12.17404 -12.01910 -11.92500 -11.68529 -11.38655 -10.92382 -10.85897 -10.44027 -9.71791 -9.00524 -7.93721 -5.21849 1.48035 1.49086 1.51796 1.57253 1.73515 2.56633 2.81765 3.39292 3.42903 3.79615 3.81139 3.92488 4.01777 4.11592 4.15645 4.20585 4.33547 4.35291 4.40134 4.49345 4.58817 4.63970 4.71553 4.80783 4.82726 4.85901 4.90752 4.97294 5.02796 5.11111 5.23142 5.27040 5.31235 5.48759 5.54021 5.58358 6.12083 6.28737 6.40148 7.10656 7.34981 8.11233 8.33536 9.29769 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038560 B = 0.003564 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.967026 B = 7855.005763 C = 7987.933496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.392 6.392 4 C 0.072 3.928 5 H 0.108 0.892 6 C -0.171 4.171 7 C 0.507 3.493 8 O -0.579 6.579 9 N -0.602 5.602 10 C 0.122 3.878 11 C -0.138 4.138 12 C 0.172 3.828 13 N -0.737 5.737 14 C -0.236 4.236 15 H 0.077 0.923 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.299 1.299 21 H -0.271 1.271 22 C -0.133 4.133 23 C 0.108 3.892 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.372 0.628 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 -5.964 16.648 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.012 3.988 5 H 0.126 0.874 6 C -0.228 4.228 7 C 0.296 3.704 8 O -0.459 6.459 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.179 4.179 12 C 0.064 3.936 13 N -0.376 5.376 14 C -0.367 4.367 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.226 1.226 21 H -0.196 1.196 22 C -0.171 4.171 23 C -0.014 4.014 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.203 0.797 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.789 -5.240 16.460 22.102 hybrid contribution 0.898 0.285 -1.305 1.610 sum -12.890 -4.955 15.155 20.503 Atomic orbital electron populations 1.21770 0.93103 1.03475 1.02408 1.22845 0.96377 0.82260 1.01521 1.88018 1.19331 1.28624 1.95204 1.21990 0.83410 0.95201 0.98235 0.87399 1.22412 1.03228 1.04377 0.92818 1.21120 0.81938 0.88331 0.78990 1.90660 1.51139 1.51055 1.53015 1.48175 1.05475 1.22779 1.57143 1.21509 0.98277 0.86235 0.94133 1.22463 0.97493 1.00767 0.97163 1.20443 0.89218 0.94676 0.89261 1.42654 1.36329 1.21095 1.37545 1.19616 1.06995 0.99102 1.11037 0.90547 1.25523 1.02653 0.99157 0.99579 1.69816 1.42129 1.24692 1.25504 0.85199 0.79527 0.78863 0.76554 1.21266 1.22622 1.19586 1.22116 0.99618 0.97495 0.97918 1.22193 0.88891 0.94019 0.96257 0.92073 0.93353 0.88562 0.92707 0.90726 0.92451 0.88853 0.88388 0.91090 0.89666 0.94417 0.92422 0.92914 0.79681 0.94159 0.89474 0.92706 0.88424 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.99 0.74 -1.48 16 2 C 0.05 0.75 6.47 71.99 0.47 1.21 16 3 O -0.39 -9.77 9.53 -129.99 -1.24 -11.01 16 4 C 0.07 1.51 2.30 29.85 0.07 1.58 16 5 H 0.11 1.73 7.08 -2.39 -0.02 1.71 16 6 C -0.17 -2.39 9.10 71.98 0.65 -1.73 16 7 C 0.51 14.88 7.12 87.66 0.62 15.50 16 8 O -0.58 -22.73 15.92 15.97 0.25 -22.47 16 9 N -0.60 -15.74 2.97 -818.97 -2.44 -18.18 16 10 C 0.12 3.61 6.43 86.36 0.56 4.16 16 11 C -0.14 -4.90 5.67 30.68 0.17 -4.72 16 12 C 0.17 6.26 2.73 45.03 0.12 6.38 16 13 N -0.74 -35.72 5.12 -322.77 -1.65 -37.37 16 14 C -0.24 -12.71 9.93 84.03 0.83 -11.87 16 15 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 17 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 18 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.13 -3.62 5.55 30.66 0.17 -3.45 16 23 C 0.11 2.10 4.97 86.35 0.43 2.53 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 28 H 0.07 0.83 7.87 -2.39 -0.02 0.81 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.88 7.87 -2.38 -0.02 0.86 16 31 H 0.10 1.01 5.41 -2.39 -0.01 0.99 16 32 H 0.07 2.34 7.01 -2.39 -0.02 2.32 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 37 H 0.37 19.53 7.80 -92.70 -0.72 18.81 16 38 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.12 1.52 4.66 -2.38 -0.01 1.51 16 Total: -1.00 -73.60 334.93 2.82 -70.78 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.28 Total: 24.87 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.31 Total: 4.21 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -3.81 Total: -114.05 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.98 Total: -33.49 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.60 2.82 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199421660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.138 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds