Wall clock time and date at job start Mon Mar 30 2020 00:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46779 * 2 1 4 4 C 1.46502 * 119.99787 * 269.99642 * 3 2 1 5 5 C 1.53001 * 109.47199 * 270.00263 * 4 3 2 6 6 C 1.34779 * 120.00303 * 90.00333 * 3 2 1 7 7 O 1.21286 * 119.99607 * 359.97438 * 6 3 2 8 8 C 1.50697 * 120.00219 * 179.97438 * 6 3 2 9 9 O 1.42899 * 109.47092 * 179.97438 * 8 6 3 10 10 C 1.42902 * 114.00106 * 179.97438 * 9 8 6 11 11 H 1.09003 * 110.63632 * 328.31196 * 10 9 8 12 12 C 1.55153 * 110.72255 * 204.97724 * 10 9 8 13 13 C 1.55131 * 101.48647 * 205.96614 * 12 10 9 14 14 N 1.47426 * 104.71847 * 37.29562 * 13 12 10 15 15 C 1.36945 * 125.64675 * 155.81671 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68946 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68852 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47026 * 108.70569 * 335.55014 * 14 13 12 24 24 H 1.09001 * 109.47293 * 300.00339 * 1 2 3 25 25 H 1.08994 * 109.46958 * 60.00284 * 1 2 3 26 26 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47293 * 239.99660 * 2 1 3 28 28 H 1.08994 * 109.46958 * 119.99716 * 2 1 3 29 29 H 1.08995 * 109.47092 * 30.00270 * 4 3 2 30 30 H 1.09004 * 109.47053 * 150.00648 * 4 3 2 31 31 H 1.08993 * 109.47289 * 60.00191 * 5 4 3 32 32 H 1.09002 * 109.47144 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46948 * 299.99852 * 5 4 3 34 34 H 1.09001 * 109.47364 * 59.99225 * 8 6 3 35 35 H 1.08997 * 109.47051 * 299.99660 * 8 6 3 36 36 H 1.08999 * 111.00098 * 324.20988 * 12 10 9 37 37 H 1.08999 * 111.00564 * 88.05636 * 12 10 9 38 38 H 1.08994 * 110.50226 * 278.45550 * 13 12 10 39 39 H 1.09001 * 110.34274 * 156.05220 * 13 12 10 40 40 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.87851 * 120.70448 * 23 14 13 42 42 H 1.08997 * 109.88162 * 241.71678 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0404 1.4450 2.2175 8 6 2.7457 3.4373 1.1672 9 8 2.9039 3.8866 2.5144 10 6 3.3797 5.2293 2.6273 11 1 4.0362 5.4757 1.7927 12 6 4.1044 5.4429 3.9824 13 6 3.9173 6.9681 4.1957 14 7 2.5634 7.2541 3.6874 15 6 1.7764 8.3101 4.0631 16 1 0.7965 8.4353 3.6267 17 6 2.2382 9.2192 5.0048 18 7 3.4327 9.0668 5.5364 19 14 1.1651 10.6600 5.5168 20 1 1.4364 11.8192 4.6292 21 1 -0.2651 10.2758 5.4060 22 1 1.4709 11.0302 6.9220 23 6 2.2004 6.2217 2.7057 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1411 -1.1385 31 1 3.8745 0.7623 -1.8407 32 1 3.8893 2.3456 -2.6542 33 1 4.3883 2.2156 -0.9507 34 1 2.0281 4.0767 0.6531 35 1 3.7060 3.4828 0.6535 36 1 3.6236 4.8720 4.7768 37 1 5.1612 5.1878 3.9048 38 1 4.6614 7.5270 3.6283 39 1 3.9843 7.2135 5.2557 40 1 3.7555 9.7024 6.1942 41 1 1.2993 5.7016 3.0307 42 1 2.0328 6.6796 1.7309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205314125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:39 Heat of formation + Delta-G solvation = -51.339243 kcal Electronic energy + Delta-G solvation = -21239.263639 eV Core-core repulsion = 18027.596333 eV Total energy + Delta-G solvation = -3211.667306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12900 -38.20830 -36.36149 -35.67337 -32.61280 -32.11232 -30.01387 -29.24074 -27.85197 -26.74941 -24.31228 -23.87948 -23.04018 -20.30587 -20.11130 -19.15809 -17.39690 -16.94746 -16.74897 -16.34847 -15.51872 -14.80942 -14.58317 -14.41337 -14.21058 -13.94232 -13.66445 -13.45393 -12.91616 -12.74731 -12.54180 -12.38255 -12.27997 -11.92717 -11.71249 -11.59729 -11.38472 -11.24889 -11.05669 -10.91980 -10.75936 -10.34417 -10.09249 -9.76128 -9.68439 -9.51351 -9.17554 -8.92270 -8.63631 -6.82118 -5.63224 -3.05426 2.56989 2.61641 3.42077 3.46825 3.49324 3.92497 4.47728 4.53402 4.58066 4.78118 4.88031 5.00023 5.03992 5.13062 5.18032 5.23660 5.32779 5.39847 5.44402 5.51728 5.52497 5.52956 5.71311 5.74916 5.82082 5.86418 5.97793 6.31406 6.38573 6.51357 6.61755 6.65683 6.72934 7.13933 7.50286 7.58242 7.64496 7.87185 8.13641 8.37967 9.23551 9.84251 10.48569 11.40743 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.003541 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.394970 B = 7905.398348 C = 8083.462844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.618 5.618 4 C 0.101 3.899 5 C -0.174 4.174 6 C 0.516 3.484 7 O -0.513 6.513 8 C 0.045 3.955 9 O -0.354 6.354 10 C 0.074 3.926 11 H 0.064 0.936 12 C -0.136 4.136 13 C 0.152 3.848 14 N -0.602 5.602 15 C -0.222 4.222 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.923 5.923 19 Si 0.916 3.084 20 H -0.289 1.289 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.116 3.884 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.014 0.986 39 H 0.112 0.888 40 H 0.252 0.748 41 H 0.034 0.966 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -15.770 -16.309 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 N -0.355 5.355 4 C -0.022 4.022 5 C -0.232 4.232 6 C 0.304 3.696 7 O -0.387 6.387 8 C -0.035 4.035 9 O -0.271 6.271 10 C 0.016 3.984 11 H 0.082 0.918 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.216 1.216 23 C -0.010 4.010 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.267 -16.014 -15.407 22.223 hybrid contribution -0.476 0.963 -0.289 1.112 sum -0.742 -15.051 -15.696 21.759 Atomic orbital electron populations 1.22140 0.95882 1.02162 1.02497 1.21381 0.94402 0.82113 1.03010 1.48010 1.67206 1.14470 1.05823 1.21619 0.97044 0.97979 0.85525 1.22242 0.96600 1.02488 1.01894 1.20462 0.77564 0.88206 0.83384 1.90725 1.49869 1.67292 1.30819 1.22240 1.00904 0.92724 0.87664 1.88077 1.87128 1.29812 1.22106 1.23357 0.95393 0.80503 0.99173 0.91771 1.23185 0.98341 1.00907 0.95040 1.22030 0.85339 0.86772 1.03117 1.44391 1.15492 1.27205 1.45817 1.19093 0.97355 1.00196 1.18379 0.90451 1.24796 0.97060 0.99375 0.99463 1.69774 1.17490 1.37493 1.32422 0.86044 0.79436 0.82153 0.77701 1.21649 1.20672 1.21601 1.21719 0.95807 0.90364 0.93143 0.91988 0.92654 0.91648 0.90687 0.89852 0.90076 0.90056 0.92227 0.91206 0.92157 0.90525 0.90688 0.90879 0.91910 0.96778 0.87038 0.93676 0.94787 0.96239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.11 1.01 6.13 -4.04 -0.02 0.99 16 3 N -0.62 -6.35 2.47 -173.69 -0.43 -6.78 16 4 C 0.10 0.69 5.93 -4.04 -0.02 0.67 16 5 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 6 C 0.52 7.48 7.75 -10.99 -0.09 7.39 16 7 O -0.51 -9.76 16.08 -14.36 -0.23 -9.99 16 8 C 0.04 0.62 4.84 36.00 0.17 0.79 16 9 O -0.35 -6.64 9.60 -55.14 -0.53 -7.17 16 10 C 0.07 1.41 3.40 -24.90 -0.08 1.32 16 11 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 12 C -0.14 -2.82 6.82 -24.46 -0.17 -2.99 16 13 C 0.15 3.82 5.91 -2.41 -0.01 3.81 16 14 N -0.60 -16.11 3.39 -169.93 -0.58 -16.69 16 15 C -0.22 -6.37 10.27 -15.06 -0.15 -6.53 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -27.30 10.08 55.49 0.56 -26.74 16 19 Si 0.92 22.39 29.55 -169.99 -5.02 17.37 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C 0.12 2.59 7.02 -3.06 -0.02 2.57 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.08 0.89 7.42 -51.93 -0.39 0.51 16 29 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.08 0.53 6.44 -51.93 -0.33 0.19 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.43 7.22 -51.93 -0.37 0.06 16 34 H 0.08 0.93 7.40 -51.93 -0.38 0.55 16 35 H 0.08 0.84 7.15 -51.93 -0.37 0.47 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 3.13 5.86 -51.93 -0.30 2.82 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.79 8.06 -51.93 -0.42 0.38 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -34.43 339.51 -8.02 -42.45 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.17 Total: -3.44 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 0.26 Total: 5.88 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.45 Total: -50.21 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.76 Total: -17.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.43 -8.02 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205314125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.893 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds