Wall clock time and date at job start Mon Mar 30 2020 00:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46779 * 2 1 4 4 C 1.46502 * 119.99787 * 269.99642 * 3 2 1 5 5 C 1.53001 * 109.47199 * 270.00263 * 4 3 2 6 6 C 1.34779 * 120.00303 * 90.00333 * 3 2 1 7 7 O 1.21286 * 119.99607 * 359.97438 * 6 3 2 8 8 C 1.50697 * 120.00219 * 179.97438 * 6 3 2 9 9 O 1.42899 * 109.47092 * 179.97438 * 8 6 3 10 10 C 1.42902 * 114.00106 * 179.97438 * 9 8 6 11 11 H 1.09003 * 110.63632 * 328.31196 * 10 9 8 12 12 C 1.55153 * 110.72255 * 204.97724 * 10 9 8 13 13 C 1.55131 * 101.48647 * 205.96614 * 12 10 9 14 14 N 1.47426 * 104.71847 * 37.29562 * 13 12 10 15 15 C 1.36945 * 125.64675 * 155.81671 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68946 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68852 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47026 * 108.70569 * 335.55014 * 14 13 12 24 24 H 1.09001 * 109.47293 * 300.00339 * 1 2 3 25 25 H 1.08994 * 109.46958 * 60.00284 * 1 2 3 26 26 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47293 * 239.99660 * 2 1 3 28 28 H 1.08994 * 109.46958 * 119.99716 * 2 1 3 29 29 H 1.08995 * 109.47092 * 30.00270 * 4 3 2 30 30 H 1.09004 * 109.47053 * 150.00648 * 4 3 2 31 31 H 1.08993 * 109.47289 * 60.00191 * 5 4 3 32 32 H 1.09002 * 109.47144 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46948 * 299.99852 * 5 4 3 34 34 H 1.09001 * 109.47364 * 59.99225 * 8 6 3 35 35 H 1.08997 * 109.47051 * 299.99660 * 8 6 3 36 36 H 1.08999 * 111.00098 * 324.20988 * 12 10 9 37 37 H 1.08999 * 111.00564 * 88.05636 * 12 10 9 38 38 H 1.08994 * 110.50226 * 278.45550 * 13 12 10 39 39 H 1.09001 * 110.34274 * 156.05220 * 13 12 10 40 40 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.87851 * 120.70448 * 23 14 13 42 42 H 1.08997 * 109.88162 * 241.71678 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0404 1.4450 2.2175 8 6 2.7457 3.4373 1.1672 9 8 2.9039 3.8866 2.5144 10 6 3.3797 5.2293 2.6273 11 1 4.0362 5.4757 1.7927 12 6 4.1044 5.4429 3.9824 13 6 3.9173 6.9681 4.1957 14 7 2.5634 7.2541 3.6874 15 6 1.7764 8.3101 4.0631 16 1 0.7965 8.4353 3.6267 17 6 2.2382 9.2192 5.0048 18 7 3.4327 9.0668 5.5364 19 14 1.1651 10.6600 5.5168 20 1 1.4364 11.8192 4.6292 21 1 -0.2651 10.2758 5.4060 22 1 1.4709 11.0302 6.9220 23 6 2.2004 6.2217 2.7057 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1411 -1.1385 31 1 3.8745 0.7623 -1.8407 32 1 3.8893 2.3456 -2.6542 33 1 4.3883 2.2156 -0.9507 34 1 2.0281 4.0767 0.6531 35 1 3.7060 3.4828 0.6535 36 1 3.6236 4.8720 4.7768 37 1 5.1612 5.1878 3.9048 38 1 4.6614 7.5270 3.6283 39 1 3.9843 7.2135 5.2557 40 1 3.7555 9.7024 6.1942 41 1 1.2993 5.7016 3.0307 42 1 2.0328 6.6796 1.7309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205314125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:38 Heat of formation + Delta-G solvation = -73.262702 kcal Electronic energy + Delta-G solvation = -21240.214311 eV Core-core repulsion = 18027.596333 eV Total energy + Delta-G solvation = -3212.617978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.16281 -39.74200 -37.56929 -37.09478 -34.22426 -33.18668 -31.25629 -30.68119 -29.22256 -28.28086 -26.27902 -24.47339 -23.89273 -22.12834 -21.83277 -20.08477 -19.02506 -18.34860 -17.89589 -17.47134 -16.82175 -16.57366 -16.05140 -15.74810 -15.11848 -15.02411 -14.84694 -14.57552 -14.27332 -13.94811 -13.73600 -13.59452 -13.45556 -13.16597 -12.97030 -12.90675 -12.68420 -12.57833 -12.46795 -12.15711 -12.02191 -11.97538 -11.93195 -11.78203 -11.34730 -10.81195 -10.76375 -10.60364 -9.76598 -8.92239 -7.78806 -5.24459 1.46750 1.49396 1.50711 1.58115 1.70305 2.48281 2.80192 3.31636 3.52239 3.69379 3.80579 4.00221 4.04670 4.14746 4.16266 4.19822 4.22739 4.25658 4.46688 4.51320 4.61469 4.62517 4.72533 4.75483 4.90816 4.96310 4.97108 5.01479 5.02503 5.03656 5.27012 5.39140 5.43875 5.58833 5.60399 5.76554 6.11788 6.28626 6.36062 7.08404 7.12111 7.74637 8.38221 9.23241 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.003541 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.394970 B = 7905.398348 C = 8083.462844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.607 5.607 4 C 0.093 3.907 5 C -0.171 4.171 6 C 0.510 3.490 7 O -0.574 6.574 8 C 0.039 3.961 9 O -0.380 6.380 10 C 0.092 3.908 11 H 0.099 0.901 12 C -0.127 4.127 13 C 0.156 3.844 14 N -0.626 5.626 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.066 4.066 18 N -0.949 5.949 19 Si 0.984 3.016 20 H -0.282 1.282 21 H -0.272 1.272 22 H -0.292 1.292 23 C 0.113 3.887 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.004 0.996 39 H 0.076 0.924 40 H 0.249 0.751 41 H 0.017 0.983 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 -16.187 -19.168 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.342 5.342 4 C -0.028 4.028 5 C -0.229 4.229 6 C 0.298 3.702 7 O -0.453 6.453 8 C -0.041 4.041 9 O -0.298 6.298 10 C 0.034 3.966 11 H 0.117 0.883 12 C -0.166 4.166 13 C 0.031 3.969 14 N -0.353 5.353 15 C -0.373 4.373 16 H 0.098 0.902 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.812 3.188 20 H -0.209 1.209 21 H -0.197 1.197 22 H -0.218 1.218 23 C -0.013 4.013 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.129 0.871 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.022 0.978 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.371 -16.457 -18.348 24.650 hybrid contribution -0.473 1.012 0.493 1.221 sum -0.844 -15.445 -17.856 23.624 Atomic orbital electron populations 1.22093 0.95443 1.03055 1.01520 1.21550 0.94748 0.81504 1.03562 1.48129 1.65316 1.14833 1.05897 1.21958 0.98380 0.98277 0.84207 1.22215 0.95419 1.02859 1.02379 1.20713 0.77234 0.88492 0.83764 1.90699 1.52907 1.68577 1.33117 1.22556 1.03234 0.92533 0.85731 1.88041 1.87264 1.29062 1.25431 1.23114 0.94075 0.80263 0.99145 0.88291 1.23007 1.00467 0.97233 0.95857 1.21795 0.84748 0.89674 1.00718 1.44703 1.15900 1.27651 1.47074 1.19468 0.97938 1.01121 1.18756 0.90209 1.25677 0.98474 1.02102 0.99585 1.70026 1.18926 1.38150 1.32700 0.84996 0.78093 0.78815 0.76901 1.20880 1.19653 1.21846 1.21885 0.96635 0.90126 0.92667 0.95385 0.91015 0.89947 0.87075 0.92284 0.87512 0.89356 0.92048 0.89248 0.93393 0.88494 0.87363 0.92660 0.88739 0.97825 0.90559 0.94129 0.96481 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 71.98 0.74 -1.79 16 2 C 0.11 1.76 6.13 86.38 0.53 2.28 16 3 N -0.61 -11.26 2.47 -821.81 -2.03 -13.29 16 4 C 0.09 0.93 5.93 86.38 0.51 1.44 16 5 C -0.17 -1.43 10.24 71.98 0.74 -0.70 16 6 C 0.51 14.36 7.75 87.66 0.68 15.04 16 7 O -0.57 -22.45 16.08 15.99 0.26 -22.19 16 8 C 0.04 0.98 4.84 71.23 0.34 1.33 16 9 O -0.38 -13.83 9.60 -129.94 -1.25 -15.07 16 10 C 0.09 3.36 3.40 31.78 0.11 3.47 16 11 H 0.10 2.95 7.88 -2.39 -0.02 2.93 16 12 C -0.13 -5.21 6.82 32.06 0.22 -4.99 16 13 C 0.16 7.94 5.91 86.93 0.51 8.46 16 14 N -0.63 -33.86 3.39 -691.55 -2.35 -36.21 16 15 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 18 N -0.95 -57.40 10.08 21.65 0.22 -57.19 16 19 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 C 0.11 4.94 7.02 86.73 0.61 5.55 16 24 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 27 H 0.11 1.01 8.07 -2.39 -0.02 1.00 16 28 H 0.06 1.27 7.42 -2.39 -0.02 1.25 16 29 H 0.11 0.59 8.07 -2.39 -0.02 0.57 16 30 H 0.09 0.80 6.44 -2.39 -0.02 0.78 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.54 7.22 -2.39 -0.02 0.52 16 34 H 0.10 2.07 7.40 -2.39 -0.02 2.05 16 35 H 0.11 2.03 7.15 -2.39 -0.02 2.01 16 36 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.08 4.45 5.86 -2.39 -0.01 4.43 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.02 0.80 8.06 -2.39 -0.02 0.78 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -77.91 339.51 4.17 -73.74 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.98 Total: 8.37 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.32 Total: 13.43 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.16 Total: -106.69 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.99 Total: -37.26 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.91 4.17 -73.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205314125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.473 kcal (2) G-P(sol) polarization free energy of solvation -77.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds