Wall clock time and date at job start Mon Mar 30 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46995 * 2 1 4 4 C 1.42897 * 114.00036 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47340 * 329.99571 * 4 3 2 6 6 C 1.52998 * 109.47258 * 90.00278 * 4 3 2 7 7 C 1.50703 * 109.46979 * 210.00442 * 4 3 2 8 8 O 1.21281 * 120.00012 * 354.99195 * 7 4 3 9 9 N 1.34777 * 119.99821 * 175.00370 * 7 4 3 10 10 C 1.46503 * 119.99619 * 179.97438 * 9 7 4 11 11 H 1.09001 * 110.89081 * 31.11356 * 10 9 7 12 12 C 1.54914 * 111.00246 * 267.19115 * 10 9 7 13 13 N 1.47427 * 104.83095 * 204.91942 * 12 10 9 14 14 C 1.36938 * 125.64632 * 204.17581 * 13 12 10 15 15 H 1.07998 * 119.99735 * 161.46106 * 14 13 12 16 16 C 1.38810 * 119.99911 * 341.46599 * 14 13 12 17 17 N 1.31618 * 120.00124 * 157.64555 * 16 14 13 18 18 Si 1.86802 * 120.00149 * 337.63854 * 16 14 13 19 19 H 1.48493 * 109.46909 * 84.53655 * 18 16 14 20 20 H 1.48492 * 109.47321 * 204.54128 * 18 16 14 21 21 H 1.48506 * 109.47118 * 324.53981 * 18 16 14 22 22 C 1.47022 * 108.70366 * 24.12576 * 13 12 10 23 23 C 1.54327 * 107.27043 * 358.94298 * 22 13 12 24 24 H 1.08999 * 110.71566 * 96.16882 * 23 22 13 25 25 C 1.53000 * 110.71756 * 219.43811 * 23 22 13 26 26 H 1.08994 * 109.47094 * 299.99693 * 1 2 3 27 27 H 1.08991 * 109.47140 * 60.00294 * 1 2 3 28 28 H 1.09007 * 109.46645 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47720 * 240.00295 * 2 1 3 30 30 H 1.09000 * 109.47418 * 119.99732 * 2 1 3 31 31 H 1.09004 * 109.46835 * 299.99680 * 6 4 3 32 32 H 1.09001 * 109.47173 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46845 * 59.99951 * 6 4 3 34 34 H 0.96993 * 120.00228 * 359.97438 * 9 7 4 35 35 H 1.08998 * 110.36781 * 323.75672 * 12 10 9 36 36 H 1.08997 * 110.36523 * 86.07942 * 12 10 9 37 37 H 0.96999 * 120.00299 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.88582 * 239.52447 * 22 13 12 39 39 H 1.09000 * 109.87663 * 118.35947 * 22 13 12 40 40 H 1.08998 * 109.47195 * 173.52385 * 25 23 22 41 41 H 1.08994 * 109.47267 * 293.52546 * 25 23 22 42 42 H 1.09008 * 109.46768 * 53.52553 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6017 0.5130 6 6 3.9387 1.5008 -1.4433 7 6 3.8347 2.7264 0.7100 8 8 2.9864 3.5047 1.0913 9 7 5.1386 2.9939 0.9214 10 6 5.5312 4.2251 1.6116 11 1 4.7730 4.5234 2.3356 12 6 5.8121 5.3637 0.5994 13 7 6.7374 6.2722 1.3007 14 6 6.9054 7.6042 1.0311 15 1 7.3648 8.2499 1.7648 16 6 6.4850 8.1245 -0.1853 17 7 6.2296 9.4108 -0.2978 18 14 6.2820 6.9992 -1.6624 19 1 4.9400 6.3649 -1.6206 20 1 6.4162 7.7920 -2.9108 21 1 7.3285 5.9461 -1.6300 22 6 7.4491 5.5116 2.3382 23 6 6.9165 4.0639 2.2915 24 1 7.5700 3.4318 1.6902 25 6 6.7635 3.4976 3.7046 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6466 0.5849 -1.9571 32 1 5.0252 1.5874 -1.4437 33 1 3.5059 2.3594 -1.9567 34 1 5.8171 2.3714 0.6166 35 1 6.2811 4.9646 -0.2999 36 1 4.8879 5.8838 0.3475 37 1 5.9362 9.7744 -1.1479 38 1 7.2528 5.9474 3.3178 39 1 8.5199 5.5194 2.1345 40 1 6.2802 2.5219 3.6546 41 1 7.7470 3.3929 4.1625 42 1 6.1540 4.1747 4.3033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206170809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:29 Heat of formation + Delta-G solvation = -61.201536 kcal Electronic energy + Delta-G solvation = -21724.488177 eV Core-core repulsion = 18512.393210 eV Total energy + Delta-G solvation = -3212.094967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05507 -38.43624 -37.33297 -34.15064 -32.96526 -32.27635 -31.01317 -30.30107 -27.99496 -26.15750 -24.75235 -23.29502 -22.78311 -21.03965 -20.43858 -19.67987 -17.29372 -17.21141 -16.83529 -16.06479 -15.79504 -15.14722 -14.93672 -14.38417 -13.96892 -13.48701 -13.45697 -13.30523 -13.09160 -13.00863 -12.68512 -12.44514 -12.19916 -12.12993 -11.99454 -11.82121 -11.59493 -11.29295 -11.22768 -11.13624 -10.66770 -10.44306 -10.27966 -10.04587 -9.97314 -9.47162 -9.38469 -8.82183 -8.59465 -7.03103 -5.92162 -3.22783 2.71207 2.85953 3.40709 3.48431 3.51494 3.78095 4.54712 4.58643 4.70017 4.74700 4.85724 4.88819 4.99251 5.04215 5.09389 5.17779 5.23924 5.25405 5.47112 5.50923 5.52984 5.67106 5.72886 5.75879 5.87809 5.90588 5.93368 5.98031 6.13988 6.26692 6.43151 6.54596 6.64870 6.76023 6.80325 6.94509 7.63108 7.72552 8.33755 8.36748 8.85252 9.71346 10.18551 11.23901 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.005425 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.555031 B = 5160.176980 C = 6014.364084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.073 3.927 5 H 0.084 0.916 6 C -0.172 4.172 7 C 0.511 3.489 8 O -0.513 6.513 9 N -0.717 5.717 10 C 0.135 3.865 11 H 0.103 0.897 12 C 0.105 3.895 13 N -0.607 5.607 14 C -0.244 4.244 15 H 0.094 0.906 16 C 0.024 3.976 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.284 1.284 20 H -0.302 1.302 21 H -0.278 1.278 22 C 0.141 3.859 23 C -0.111 4.111 24 H 0.077 0.923 25 C -0.137 4.137 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.397 0.603 35 H 0.027 0.973 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -22.907 1.577 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.011 3.989 5 H 0.102 0.898 6 C -0.230 4.230 7 C 0.295 3.705 8 O -0.387 6.387 9 N -0.370 5.370 10 C 0.029 3.971 11 H 0.121 0.879 12 C -0.022 4.022 13 N -0.334 5.334 14 C -0.371 4.371 15 H 0.111 0.889 16 C -0.174 4.174 17 N -0.550 5.550 18 Si 0.711 3.289 19 H -0.211 1.211 20 H -0.230 1.230 21 H -0.204 1.204 22 C 0.015 3.985 23 C -0.131 4.131 24 H 0.096 0.904 25 C -0.195 4.195 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.231 0.769 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.124 -21.918 1.752 22.372 hybrid contribution 0.476 -1.092 -1.240 1.720 sum -3.649 -23.010 0.511 23.303 Atomic orbital electron populations 1.21727 0.93458 1.02081 1.03560 1.22583 0.95999 0.83708 0.99917 1.88091 1.18416 1.26072 1.94914 1.21874 0.83716 0.96545 0.96719 0.89813 1.22247 1.01817 1.03780 0.95137 1.20345 0.82837 0.87590 0.79739 1.90750 1.50063 1.48572 1.49303 1.45866 1.06777 1.23972 1.60360 1.22354 0.96301 0.83508 0.94890 0.87894 1.22269 0.94816 0.91040 0.94031 1.44650 1.42834 1.06563 1.39344 1.18633 1.38085 0.80431 0.99919 0.88862 1.24981 0.99570 0.95335 0.97564 1.69840 1.47492 1.12094 1.25560 0.86989 0.78136 0.80244 0.83539 1.21070 1.22989 1.20378 1.21420 0.95364 0.88259 0.93417 1.22464 0.95702 0.98280 0.96631 0.90422 1.21733 1.01605 1.00468 0.95686 0.91588 0.91706 0.91118 0.93303 0.93334 0.91305 0.90847 0.90845 0.76949 0.95555 0.91891 0.92678 0.94380 0.94821 0.93009 0.92480 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.90 9.53 -55.09 -0.52 -5.43 16 4 C 0.07 0.87 3.13 -27.88 -0.09 0.78 16 5 H 0.08 0.71 7.79 -51.93 -0.40 0.31 16 6 C -0.17 -1.75 9.48 37.16 0.35 -1.40 16 7 C 0.51 8.21 7.18 -10.98 -0.08 8.13 16 8 O -0.51 -10.92 16.15 -14.30 -0.23 -11.15 16 9 N -0.72 -10.31 5.16 -51.73 -0.27 -10.58 16 10 C 0.13 2.39 2.87 -65.78 -0.19 2.20 16 11 H 0.10 2.02 7.44 -51.93 -0.39 1.64 16 12 C 0.10 2.40 4.39 -2.52 -0.01 2.39 16 13 N -0.61 -15.01 3.21 -170.07 -0.55 -15.55 16 14 C -0.24 -7.09 10.57 -15.06 -0.16 -7.25 16 15 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 16 C 0.02 0.73 5.43 -17.43 -0.09 0.64 16 17 N -0.91 -28.72 13.97 55.49 0.78 -27.94 16 18 Si 0.88 23.41 24.27 -169.99 -4.13 19.28 16 19 H -0.28 -7.53 6.49 56.52 0.37 -7.17 16 20 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 21 H -0.28 -7.14 6.66 56.52 0.38 -6.76 16 22 C 0.14 2.74 6.84 -3.06 -0.02 2.72 16 23 C -0.11 -1.68 3.19 -88.79 -0.28 -1.97 16 24 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 25 C -0.14 -1.68 9.16 37.16 0.34 -1.34 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 30 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 4.21 8.35 -40.82 -0.34 3.87 16 35 H 0.03 0.62 5.58 -51.93 -0.29 0.33 16 36 H 0.06 1.65 6.63 -51.93 -0.34 1.31 16 37 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 38 H 0.04 0.73 7.76 -51.93 -0.40 0.33 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.78 8.06 -51.92 -0.42 0.36 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -36.00 336.25 -6.69 -42.69 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.23 Total: -1.15 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 0.39 Total: 4.76 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.04 Total: -54.07 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.76 Total: -16.58 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.13 Total: 19.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.00 -6.69 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206170809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.507 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds