Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46995 * 2 1 4 4 C 1.42897 * 114.00036 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47340 * 329.99571 * 4 3 2 6 6 C 1.52998 * 109.47258 * 90.00278 * 4 3 2 7 7 C 1.50703 * 109.46979 * 210.00442 * 4 3 2 8 8 O 1.21281 * 120.00012 * 354.99195 * 7 4 3 9 9 N 1.34777 * 119.99821 * 175.00370 * 7 4 3 10 10 C 1.46503 * 119.99619 * 179.97438 * 9 7 4 11 11 H 1.09001 * 110.89081 * 31.11356 * 10 9 7 12 12 C 1.54914 * 111.00246 * 267.19115 * 10 9 7 13 13 N 1.47427 * 104.83095 * 204.91942 * 12 10 9 14 14 C 1.36938 * 125.64632 * 204.17581 * 13 12 10 15 15 H 1.07998 * 119.99735 * 161.46106 * 14 13 12 16 16 C 1.38810 * 119.99911 * 341.46599 * 14 13 12 17 17 N 1.31618 * 120.00124 * 157.64555 * 16 14 13 18 18 Si 1.86802 * 120.00149 * 337.63854 * 16 14 13 19 19 H 1.48493 * 109.46909 * 84.53655 * 18 16 14 20 20 H 1.48492 * 109.47321 * 204.54128 * 18 16 14 21 21 H 1.48506 * 109.47118 * 324.53981 * 18 16 14 22 22 C 1.47022 * 108.70366 * 24.12576 * 13 12 10 23 23 C 1.54327 * 107.27043 * 358.94298 * 22 13 12 24 24 H 1.08999 * 110.71566 * 96.16882 * 23 22 13 25 25 C 1.53000 * 110.71756 * 219.43811 * 23 22 13 26 26 H 1.08994 * 109.47094 * 299.99693 * 1 2 3 27 27 H 1.08991 * 109.47140 * 60.00294 * 1 2 3 28 28 H 1.09007 * 109.46645 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47720 * 240.00295 * 2 1 3 30 30 H 1.09000 * 109.47418 * 119.99732 * 2 1 3 31 31 H 1.09004 * 109.46835 * 299.99680 * 6 4 3 32 32 H 1.09001 * 109.47173 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46845 * 59.99951 * 6 4 3 34 34 H 0.96993 * 120.00228 * 359.97438 * 9 7 4 35 35 H 1.08998 * 110.36781 * 323.75672 * 12 10 9 36 36 H 1.08997 * 110.36523 * 86.07942 * 12 10 9 37 37 H 0.96999 * 120.00299 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.88582 * 239.52447 * 22 13 12 39 39 H 1.09000 * 109.87663 * 118.35947 * 22 13 12 40 40 H 1.08998 * 109.47195 * 173.52385 * 25 23 22 41 41 H 1.08994 * 109.47267 * 293.52546 * 25 23 22 42 42 H 1.09008 * 109.46768 * 53.52553 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6017 0.5130 6 6 3.9387 1.5008 -1.4433 7 6 3.8347 2.7264 0.7100 8 8 2.9864 3.5047 1.0913 9 7 5.1386 2.9939 0.9214 10 6 5.5312 4.2251 1.6116 11 1 4.7730 4.5234 2.3356 12 6 5.8121 5.3637 0.5994 13 7 6.7374 6.2722 1.3007 14 6 6.9054 7.6042 1.0311 15 1 7.3648 8.2499 1.7648 16 6 6.4850 8.1245 -0.1853 17 7 6.2296 9.4108 -0.2978 18 14 6.2820 6.9992 -1.6624 19 1 4.9400 6.3649 -1.6206 20 1 6.4162 7.7920 -2.9108 21 1 7.3285 5.9461 -1.6300 22 6 7.4491 5.5116 2.3382 23 6 6.9165 4.0639 2.2915 24 1 7.5700 3.4318 1.6902 25 6 6.7635 3.4976 3.7046 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6466 0.5849 -1.9571 32 1 5.0252 1.5874 -1.4437 33 1 3.5059 2.3594 -1.9567 34 1 5.8171 2.3714 0.6166 35 1 6.2811 4.9646 -0.2999 36 1 4.8879 5.8838 0.3475 37 1 5.9362 9.7744 -1.1479 38 1 7.2528 5.9474 3.3178 39 1 8.5199 5.5194 2.1345 40 1 6.2802 2.5219 3.6546 41 1 7.7470 3.3929 4.1625 42 1 6.1540 4.1747 4.3033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206170809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = -88.539992 kcal Electronic energy + Delta-G solvation = -21725.673662 eV Core-core repulsion = 18512.393210 eV Total energy + Delta-G solvation = -3213.280451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31589 -39.73145 -38.54647 -35.77534 -34.54435 -33.28077 -32.79442 -31.13918 -29.57539 -27.79929 -25.92883 -24.68751 -23.60670 -22.74852 -21.77830 -21.00349 -18.99371 -18.40014 -18.22037 -17.36973 -16.99896 -16.70437 -16.10196 -15.80259 -15.56338 -15.18540 -14.78132 -14.44143 -14.26166 -14.23647 -13.93610 -13.62740 -13.40835 -13.25252 -13.23731 -13.12205 -12.90532 -12.82523 -12.32999 -12.29513 -12.16238 -12.04729 -11.84818 -11.63049 -11.51034 -11.00682 -10.89897 -10.48962 -10.14938 -9.11398 -8.24410 -5.50603 1.25770 1.27635 1.38079 1.49617 1.77419 2.35980 2.84292 3.01999 3.31855 3.47895 3.68047 3.79221 3.89008 3.97001 4.01148 4.20199 4.24082 4.32595 4.45727 4.49196 4.54838 4.57025 4.72779 4.74479 4.83972 4.87431 4.93871 5.00438 5.01621 5.08016 5.16898 5.21643 5.26557 5.35764 5.50638 5.63424 6.04729 6.13064 6.53636 6.69519 7.20239 7.47809 8.03539 8.95391 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.005425 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.555031 B = 5160.176980 C = 6014.364084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.397 6.397 4 C 0.079 3.921 5 H 0.130 0.870 6 C -0.169 4.169 7 C 0.503 3.497 8 O -0.577 6.577 9 N -0.698 5.698 10 C 0.147 3.853 11 H 0.078 0.922 12 C 0.103 3.897 13 N -0.626 5.626 14 C -0.236 4.236 15 H 0.066 0.934 16 C -0.037 4.037 17 N -0.954 5.954 18 Si 0.943 3.057 19 H -0.291 1.291 20 H -0.303 1.303 21 H -0.255 1.255 22 C 0.131 3.869 23 C -0.090 4.090 24 H 0.112 0.888 25 C -0.131 4.131 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.421 0.579 35 H 0.033 0.967 36 H 0.016 0.984 37 H 0.262 0.738 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -27.609 1.374 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.317 6.317 4 C 0.018 3.982 5 H 0.147 0.853 6 C -0.227 4.227 7 C 0.290 3.710 8 O -0.455 6.455 9 N -0.353 5.353 10 C 0.040 3.960 11 H 0.097 0.903 12 C -0.024 4.024 13 N -0.353 5.353 14 C -0.364 4.364 15 H 0.083 0.917 16 C -0.231 4.231 17 N -0.601 5.601 18 Si 0.772 3.228 19 H -0.218 1.218 20 H -0.231 1.231 21 H -0.180 1.180 22 C 0.007 3.993 23 C -0.109 4.109 24 H 0.130 0.870 25 C -0.189 4.189 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.259 0.741 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.735 -26.711 1.555 26.896 hybrid contribution 0.022 0.387 -1.068 1.136 sum -2.713 -26.324 0.487 26.468 Atomic orbital electron populations 1.21783 0.93515 1.03481 1.02207 1.22858 0.96108 0.82087 1.01820 1.88062 1.19497 1.28947 1.95160 1.21983 0.83526 0.95228 0.97499 0.85292 1.22278 1.02836 1.03840 0.93729 1.21346 0.82449 0.88486 0.78681 1.90728 1.51828 1.50981 1.51926 1.45641 1.07223 1.22888 1.59509 1.21942 0.97469 0.83394 0.93151 0.90349 1.22272 0.92373 0.92086 0.95634 1.44752 1.44301 1.05799 1.40479 1.18637 1.36166 0.82569 0.99078 0.91661 1.25629 1.00523 0.96638 1.00336 1.69964 1.50010 1.14036 1.26049 0.85985 0.78114 0.78781 0.79889 1.21803 1.23108 1.17994 1.21710 0.95685 0.90430 0.91489 1.22434 0.93614 0.95950 0.98945 0.87032 1.21708 1.03043 1.00880 0.93233 0.93279 0.92756 0.88306 0.90922 0.91662 0.88429 0.88811 0.94042 0.74094 0.94941 0.96536 0.92865 0.94588 0.93672 0.90791 0.90076 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.05 0.74 6.47 71.98 0.47 1.20 16 3 O -0.40 -10.27 9.53 -129.99 -1.24 -11.50 16 4 C 0.08 1.63 3.13 29.85 0.09 1.72 16 5 H 0.13 1.50 7.79 -2.39 -0.02 1.48 16 6 C -0.17 -2.87 9.48 71.98 0.68 -2.19 16 7 C 0.50 15.45 7.18 87.66 0.63 16.08 16 8 O -0.58 -25.07 16.15 15.96 0.26 -24.81 16 9 N -0.70 -18.12 5.16 -435.95 -2.25 -20.36 16 10 C 0.15 5.01 2.87 46.38 0.13 5.15 16 11 H 0.08 3.11 7.44 -2.39 -0.02 3.09 16 12 C 0.10 4.67 4.39 86.86 0.38 5.05 16 13 N -0.63 -31.08 3.21 -691.98 -2.22 -33.30 16 14 C -0.24 -14.14 10.57 84.03 0.89 -13.25 16 15 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 16 C -0.04 -2.27 5.43 84.86 0.46 -1.81 16 17 N -0.95 -62.93 13.97 21.65 0.30 -62.63 16 18 Si 0.94 49.59 24.27 68.60 1.66 51.26 16 19 H -0.29 -15.47 6.49 99.48 0.65 -14.83 16 20 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 21 H -0.26 -12.33 6.66 99.48 0.66 -11.67 16 22 C 0.13 4.88 6.84 86.73 0.59 5.47 16 23 C -0.09 -2.41 3.19 -9.61 -0.03 -2.44 16 24 H 0.11 2.31 8.00 -2.39 -0.02 2.29 16 25 C -0.13 -2.67 9.16 71.98 0.66 -2.01 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 0.79 7.87 -2.39 -0.02 0.77 16 30 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 31 H 0.10 1.11 7.87 -2.38 -0.02 1.09 16 32 H 0.09 1.18 7.92 -2.39 -0.02 1.16 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.42 6.84 8.35 -92.71 -0.77 6.07 16 35 H 0.03 1.45 5.58 -2.39 -0.01 1.44 16 36 H 0.02 0.89 6.63 -2.39 -0.02 0.87 16 37 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 38 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.06 8.06 -2.38 -0.02 1.05 16 Total: -1.00 -84.95 336.25 2.33 -82.62 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.11 Total: 7.36 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.70 Total: 11.38 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -4.16 Total: -116.30 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.98 Total: -36.32 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.66 Total: 51.26 kcal Total: -84.95 2.33 -82.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206170809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.922 kcal (2) G-P(sol) polarization free energy of solvation -84.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds