Wall clock time and date at job start Mon Mar 30 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42894 * 109.47151 * 2 1 4 4 C 1.42897 * 114.00047 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.47200 * 29.99500 * 4 3 2 6 6 C 1.53000 * 109.47446 * 269.99536 * 4 3 2 7 7 C 1.50702 * 109.47620 * 149.99329 * 4 3 2 8 8 O 1.21286 * 119.99326 * 10.09559 * 7 4 3 9 9 N 1.34770 * 120.00589 * 190.09204 * 7 4 3 10 10 C 1.46924 * 120.62904 * 5.08581 * 9 7 4 11 11 C 1.52764 * 109.01163 * 233.58204 * 10 9 7 12 12 C 1.53047 * 109.37947 * 305.59057 * 11 10 9 13 13 C 1.53043 * 109.54047 * 61.23595 * 12 11 10 14 14 H 1.08995 * 109.49523 * 58.58371 * 13 12 11 15 15 N 1.46498 * 109.52268 * 178.66904 * 13 12 11 16 16 C 1.36944 * 119.99698 * 274.85499 * 15 13 12 17 17 H 1.07991 * 120.00053 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99578 * 180.02562 * 16 15 13 19 19 N 1.31611 * 119.99728 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00116 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47069 * 90.00342 * 20 18 16 22 22 H 1.48495 * 109.47069 * 210.00002 * 20 18 16 23 23 H 1.48497 * 109.47173 * 330.00053 * 20 18 16 24 24 C 1.46921 * 120.63551 * 185.35942 * 9 7 4 25 25 H 1.08997 * 109.47070 * 300.00598 * 1 2 3 26 26 H 1.08996 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46548 * 60.00661 * 1 2 3 28 28 H 1.09003 * 109.46548 * 119.99339 * 2 1 3 29 29 H 1.08997 * 109.47526 * 239.99125 * 2 1 3 30 30 H 1.08998 * 109.47659 * 175.00621 * 6 4 3 31 31 H 1.08994 * 109.47280 * 295.01145 * 6 4 3 32 32 H 1.09004 * 109.46684 * 55.00583 * 6 4 3 33 33 H 1.09003 * 109.58956 * 353.41674 * 10 9 7 34 34 H 1.08998 * 109.59307 * 113.84048 * 10 9 7 35 35 H 1.08989 * 109.56956 * 185.55269 * 11 10 9 36 36 H 1.09001 * 109.38621 * 65.51136 * 11 10 9 37 37 H 1.08999 * 109.45632 * 301.21441 * 12 11 10 38 38 H 1.08999 * 109.44532 * 181.25471 * 12 11 10 39 39 H 0.96997 * 120.00423 * 94.85521 * 15 13 12 40 40 H 0.97000 * 120.00416 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.59417 * 246.16152 * 24 9 7 42 42 H 1.09009 * 109.58397 * 6.44466 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6013 -0.5129 6 6 3.9388 1.5007 1.4433 7 6 3.8349 2.7261 -0.7100 8 8 2.9947 3.5480 -1.0093 9 7 5.1298 2.9452 -1.0127 10 6 6.1433 1.9126 -0.7574 11 6 7.2689 2.5165 0.0805 12 6 7.8073 3.7671 -0.6182 13 6 6.6886 4.8036 -0.7463 14 1 6.3079 5.0522 0.2442 15 7 7.2124 6.0127 -1.3866 16 6 7.8322 6.9731 -0.6324 17 1 7.9346 6.8393 0.4343 18 6 8.3281 8.1190 -1.2390 19 7 8.9233 9.0423 -0.5141 20 14 8.1504 8.3506 -3.0841 21 1 6.8728 9.0496 -3.3744 22 1 9.2853 9.1622 -3.5926 23 1 8.1519 7.0243 -3.7519 24 6 5.5557 4.2234 -1.5988 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 -0.8901 28 1 1.8933 -0.5138 0.8901 29 1 1.8935 -0.5139 -0.8899 30 1 5.0287 1.4973 1.4451 31 1 3.5775 2.4063 1.9303 32 1 3.5718 0.6272 1.9823 33 1 5.6907 1.0825 -0.2149 34 1 6.5478 1.5555 -1.7045 35 1 8.0719 1.7881 0.1923 36 1 6.8832 2.7866 1.0635 37 1 8.1708 3.5005 -1.6106 38 1 8.6254 4.1862 -0.0324 39 1 7.1202 6.1330 -2.3446 40 1 9.2695 9.8432 -0.9379 41 1 5.9113 4.0587 -2.6159 42 1 4.7148 4.9169 -1.6135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207430818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:33 Heat of formation + Delta-G solvation = -68.472253 kcal Electronic energy + Delta-G solvation = -21623.683666 eV Core-core repulsion = 18411.273417 eV Total energy + Delta-G solvation = -3212.410249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38914 -38.30761 -37.10674 -34.75748 -32.79690 -32.09167 -31.41912 -30.38718 -28.71584 -25.81706 -24.23302 -23.41867 -22.72839 -21.99513 -20.29491 -19.01133 -17.66683 -17.50303 -16.85024 -15.97716 -15.63829 -15.17207 -14.67454 -14.47781 -14.11642 -13.89053 -13.67415 -13.49477 -13.17586 -12.84290 -12.77035 -12.54871 -12.48592 -12.30922 -12.14219 -11.61127 -11.40023 -11.27940 -11.09982 -11.01378 -10.71182 -10.52212 -10.44915 -10.10359 -10.03114 -9.61330 -9.42117 -8.94956 -8.50105 -7.31002 -5.78628 -3.15362 2.63407 2.72763 3.37580 3.41160 3.45826 3.63602 4.36835 4.57817 4.58316 4.71100 4.79393 4.85872 4.96513 5.04809 5.06228 5.18113 5.23662 5.33323 5.39816 5.46420 5.48115 5.51125 5.63603 5.64552 5.68574 5.86012 5.87657 5.92449 6.02120 6.09659 6.28359 6.41243 6.54582 6.75585 6.91262 6.92431 7.46861 7.96126 8.25135 8.39757 9.17316 9.89754 10.08474 11.39462 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.004109 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.427400 B = 6812.422807 C = 7187.665811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.074 3.926 5 H 0.082 0.918 6 C -0.174 4.174 7 C 0.514 3.486 8 O -0.520 6.520 9 N -0.604 5.604 10 C 0.102 3.898 11 C -0.135 4.135 12 C -0.137 4.137 13 C 0.173 3.827 14 H 0.059 0.941 15 N -0.745 5.745 16 C -0.244 4.244 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.105 3.895 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.064 0.936 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 -22.950 1.151 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.012 3.988 5 H 0.100 0.900 6 C -0.231 4.231 7 C 0.301 3.699 8 O -0.394 6.394 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.173 4.173 12 C -0.178 4.178 13 C 0.062 3.938 14 H 0.077 0.923 15 N -0.388 5.388 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.018 4.018 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.969 -22.174 1.173 24.340 hybrid contribution 0.337 -0.015 -1.293 1.336 sum -9.632 -22.189 -0.120 24.190 Atomic orbital electron populations 1.21727 0.93451 1.02110 1.03514 1.22584 0.95983 0.83716 0.99958 1.88073 1.18522 1.26086 1.94944 1.21879 0.83470 0.96582 0.96854 0.90041 1.22319 1.02138 1.03897 0.94792 1.20310 0.82231 0.88166 0.79230 1.90721 1.49732 1.46575 1.52417 1.48001 1.06331 1.16748 1.62854 1.21819 0.89817 0.90164 1.00287 1.21882 0.97338 0.98704 0.99423 1.22243 1.00528 0.94703 1.00293 1.20453 0.90728 0.86543 0.96041 0.92260 1.42671 1.70323 1.19418 1.06344 1.19029 1.29139 0.96154 0.93059 0.89156 1.24665 1.00334 0.96615 0.97347 1.69695 1.43795 1.10028 1.34496 0.86556 0.77540 0.77548 0.86917 1.20942 1.21730 1.20306 1.22011 0.99246 0.84090 0.96463 0.91689 0.91097 0.91648 0.93242 0.93365 0.90333 0.90874 0.91291 0.90142 0.91227 0.91046 0.91535 0.92535 0.90995 0.80570 0.92997 0.91803 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.47 6.47 37.16 0.24 0.71 16 3 O -0.36 -4.67 9.54 -54.94 -0.52 -5.20 16 4 C 0.07 0.84 2.28 -27.88 -0.06 0.78 16 5 H 0.08 0.70 6.81 -51.92 -0.35 0.34 16 6 C -0.17 -1.65 9.19 37.16 0.34 -1.31 16 7 C 0.51 7.99 7.03 -10.99 -0.08 7.91 16 8 O -0.52 -10.50 15.97 -14.15 -0.23 -10.73 16 9 N -0.60 -8.56 2.98 -173.03 -0.52 -9.08 16 10 C 0.10 1.06 5.57 -3.93 -0.02 1.03 16 11 C -0.13 -1.54 5.95 -26.83 -0.16 -1.70 16 12 C -0.14 -2.19 5.47 -26.69 -0.15 -2.33 16 13 C 0.17 3.28 2.92 -67.81 -0.20 3.08 16 14 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 15 N -0.75 -17.46 4.93 -53.31 -0.26 -17.72 16 16 C -0.24 -6.83 10.41 -15.06 -0.16 -6.98 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 18 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 19 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 20 Si 0.88 22.13 27.74 -169.99 -4.71 17.42 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 24 C 0.10 1.77 5.89 -3.71 -0.02 1.75 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.34 7.78 -51.93 -0.40 -0.06 16 29 H 0.05 0.36 8.09 -51.93 -0.42 -0.05 16 30 H 0.08 0.64 5.68 -51.93 -0.30 0.35 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.51 7.78 -51.93 -0.40 0.11 16 33 H 0.08 0.61 4.52 -51.93 -0.23 0.38 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.67 8.14 -51.94 -0.42 0.24 16 36 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.36 8.34 5.66 -40.82 -0.23 8.10 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.81 7.04 -51.92 -0.37 1.44 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -34.44 331.68 -7.37 -41.81 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.93 Total: 4.76 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 0.02 Total: 2.23 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.00 Total: -55.30 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.75 Total: -15.93 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.44 -7.37 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.661 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds