Wall clock time and date at job start Mon Mar 30 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46800 * 2 1 4 4 C 1.42902 * 114.00048 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47260 * 29.99472 * 4 3 2 6 6 C 1.53006 * 109.46399 * 269.99655 * 4 3 2 7 7 C 1.50691 * 109.47426 * 150.00086 * 4 3 2 8 8 O 1.21280 * 120.00088 * 4.99250 * 7 4 3 9 9 N 1.34780 * 120.00213 * 184.99868 * 7 4 3 10 10 C 1.46926 * 120.62730 * 359.97438 * 9 7 4 11 11 C 1.53191 * 108.89109 * 126.46248 * 10 9 7 12 12 C 1.53044 * 109.31440 * 54.56430 * 11 10 9 13 13 C 1.53040 * 109.53662 * 298.63203 * 12 11 10 14 14 H 1.08994 * 109.49843 * 301.38341 * 13 12 11 15 15 N 1.46492 * 109.49822 * 181.31643 * 13 12 11 16 16 C 1.36936 * 120.00090 * 84.99734 * 15 13 12 17 17 H 1.08002 * 120.00231 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00163 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00151 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47383 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47153 * 120.00540 * 20 18 16 23 23 H 1.48499 * 109.47108 * 239.99989 * 20 18 16 24 24 C 1.46957 * 120.65462 * 179.81159 * 9 7 4 25 25 H 1.09004 * 109.47179 * 299.99793 * 1 2 3 26 26 H 1.08995 * 109.47559 * 60.00123 * 1 2 3 27 27 H 1.09000 * 109.46881 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46870 * 240.00389 * 2 1 3 29 29 H 1.08995 * 109.47559 * 119.99876 * 2 1 3 30 30 H 1.09001 * 109.46817 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.47265 * 299.99814 * 6 4 3 32 32 H 1.08995 * 109.47178 * 60.00428 * 6 4 3 33 33 H 1.09002 * 109.58861 * 6.60251 * 10 9 7 34 34 H 1.08996 * 109.58519 * 246.32142 * 10 9 7 35 35 H 1.09003 * 109.49294 * 174.51508 * 11 10 9 36 36 H 1.08997 * 109.50161 * 294.61021 * 11 10 9 37 37 H 1.08994 * 109.45986 * 58.65006 * 12 11 10 38 38 H 1.09001 * 109.45959 * 178.62334 * 12 11 10 39 39 H 0.97003 * 120.00393 * 264.99866 * 15 13 12 40 40 H 0.96993 * 120.00461 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.46843 * 113.75468 * 24 9 7 42 42 H 1.08997 * 109.71602 * 353.46961 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8632 0.6018 -0.5146 6 6 3.9397 1.5004 1.4418 7 6 3.8341 2.7266 -0.7109 8 8 2.9855 3.5049 -1.0915 9 7 5.1379 2.9942 -0.9234 10 6 6.1774 2.0612 -0.4678 11 6 7.0836 1.7114 -1.6523 12 6 7.6252 3.0010 -2.2735 13 6 6.4604 3.8486 -2.7903 14 1 5.8938 3.2781 -3.5261 15 7 6.9815 5.0680 -3.4127 16 6 7.3789 5.0519 -4.7230 17 1 7.3079 4.1403 -5.2977 18 6 7.8721 6.2076 -5.3129 19 7 7.9583 7.3188 -4.6127 20 14 8.4137 6.1858 -7.1006 21 1 8.2165 4.8248 -7.6610 22 1 7.6049 7.1614 -7.8747 23 1 9.8496 6.5541 -7.1873 24 6 5.5471 4.2228 -1.6182 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.0263 1.5861 1.4415 31 1 3.5073 2.3588 1.9559 32 1 3.6480 0.5845 1.9556 33 1 5.7112 1.1537 -0.0839 34 1 6.7689 2.5291 0.3192 35 1 7.9150 1.0976 -1.3055 36 1 6.5109 1.1608 -2.3985 37 1 8.1770 3.5631 -1.5201 38 1 8.2898 2.7541 -3.1014 39 1 7.0450 5.8870 -2.8967 40 1 8.3026 8.1264 -5.0250 41 1 6.0868 4.8690 -0.9260 42 1 4.6662 4.7439 -1.9931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207430819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:35 Heat of formation + Delta-G solvation = -70.882943 kcal Electronic energy + Delta-G solvation = -21533.099771 eV Core-core repulsion = 18320.584987 eV Total energy + Delta-G solvation = -3212.514784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31161 -38.22835 -36.99609 -34.62523 -32.83744 -31.98722 -31.23760 -30.28660 -28.18016 -25.81667 -24.17141 -23.49438 -22.76163 -22.04723 -20.15013 -19.04522 -17.42110 -17.18453 -16.74239 -15.99377 -15.62186 -15.03932 -14.61754 -14.21940 -14.16308 -13.81019 -13.55487 -13.37780 -13.15200 -12.97966 -12.73274 -12.50314 -12.41418 -12.28525 -12.03157 -11.57759 -11.25148 -11.07144 -10.93545 -10.91753 -10.65928 -10.42164 -10.34755 -10.06101 -9.97744 -9.71845 -9.34331 -8.92125 -8.40749 -6.99189 -5.78012 -3.07704 2.73061 2.78642 3.43114 3.48765 3.51009 3.69188 4.41325 4.57953 4.64204 4.74372 4.87776 4.88879 5.00322 5.08483 5.10825 5.20138 5.29042 5.42007 5.48064 5.52829 5.55847 5.64642 5.67888 5.74053 5.80291 5.88158 5.91864 6.01714 6.15452 6.22977 6.37738 6.53076 6.66479 6.84549 6.97193 7.03613 7.55951 7.69514 8.33037 8.40179 9.51194 10.06406 10.41471 11.44550 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.003904 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.740383 B = 7169.693839 C = 7495.514059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.084 0.916 6 C -0.178 4.178 7 C 0.513 3.487 8 O -0.520 6.520 9 N -0.603 5.603 10 C 0.102 3.898 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.168 3.832 14 H 0.050 0.950 15 N -0.721 5.721 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.107 3.893 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.066 0.934 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 -17.394 13.347 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.011 3.989 5 H 0.102 0.898 6 C -0.235 4.235 7 C 0.299 3.701 8 O -0.395 6.395 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.173 4.173 12 C -0.178 4.178 13 C 0.057 3.943 14 H 0.068 0.932 15 N -0.362 5.362 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.015 4.015 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.390 -16.823 12.947 22.478 hybrid contribution 0.718 0.009 -0.806 1.079 sum -6.673 -16.814 12.142 21.786 Atomic orbital electron populations 1.21725 0.93467 1.02105 1.03491 1.22581 0.95974 0.83711 0.99971 1.88066 1.18483 1.26108 1.94924 1.21857 0.83521 0.96825 0.96659 0.89819 1.22414 1.02339 1.03647 0.95106 1.20290 0.82364 0.87589 0.79848 1.90721 1.49617 1.48887 1.50286 1.48046 1.04893 1.23096 1.57838 1.21960 0.90063 0.92816 0.97273 1.21958 0.98819 0.99209 0.97354 1.22283 1.00264 0.94807 1.00422 1.20482 0.91903 0.89631 0.92261 0.93220 1.42315 1.75708 1.07360 1.10829 1.19250 1.34563 0.95731 0.87422 0.91102 1.24753 1.02121 0.95723 0.98250 1.69670 1.52131 1.00370 1.35775 0.86114 0.77926 0.77275 0.84845 1.20557 1.21812 1.21867 1.22016 1.00187 0.84938 0.94364 0.91784 0.91566 0.91107 0.93259 0.93329 0.90200 0.91012 0.91402 0.90118 0.91096 0.91244 0.91860 0.92403 0.91519 0.78169 0.93494 0.91600 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.83 9.53 -55.09 -0.52 -5.35 16 4 C 0.07 0.87 2.30 -27.88 -0.06 0.80 16 5 H 0.08 0.80 7.08 -51.93 -0.37 0.43 16 6 C -0.18 -1.59 9.10 37.16 0.34 -1.26 16 7 C 0.51 8.29 7.12 -10.99 -0.08 8.21 16 8 O -0.52 -10.90 15.93 -14.30 -0.23 -11.13 16 9 N -0.60 -9.00 2.98 -172.72 -0.51 -9.51 16 10 C 0.10 1.12 4.97 -3.71 -0.02 1.10 16 11 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 12 C -0.14 -2.29 5.46 -26.69 -0.15 -2.44 16 13 C 0.17 3.36 2.92 -67.79 -0.20 3.16 16 14 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 15 N -0.72 -18.06 5.12 -53.30 -0.27 -18.33 16 16 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C 0.11 1.94 5.90 -3.67 -0.02 1.92 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.05 0.35 7.87 -51.93 -0.41 -0.06 16 30 H 0.08 0.60 5.41 -51.93 -0.28 0.32 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 33 H 0.08 0.66 4.66 -51.93 -0.24 0.41 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.93 7.02 -51.93 -0.36 1.56 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -33.66 334.95 -7.77 -41.43 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.00 Total: 5.49 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 0.03 Total: 2.36 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.06 Total: -55.28 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.75 Total: -16.48 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.66 -7.77 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.453 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds