Wall clock time and date at job start Mon Mar 30 2020 01:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46800 * 2 1 4 4 C 1.42902 * 114.00048 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47260 * 29.99472 * 4 3 2 6 6 C 1.53006 * 109.46399 * 269.99655 * 4 3 2 7 7 C 1.50691 * 109.47426 * 150.00086 * 4 3 2 8 8 O 1.21280 * 120.00088 * 4.99250 * 7 4 3 9 9 N 1.34780 * 120.00213 * 184.99868 * 7 4 3 10 10 C 1.46926 * 120.62730 * 359.97438 * 9 7 4 11 11 C 1.53191 * 108.89109 * 126.46248 * 10 9 7 12 12 C 1.53044 * 109.31440 * 54.56430 * 11 10 9 13 13 C 1.53040 * 109.53662 * 298.63203 * 12 11 10 14 14 H 1.08994 * 109.49843 * 301.38341 * 13 12 11 15 15 N 1.46492 * 109.49822 * 181.31643 * 13 12 11 16 16 C 1.36936 * 120.00090 * 84.99734 * 15 13 12 17 17 H 1.08002 * 120.00231 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00163 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00151 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47383 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47153 * 120.00540 * 20 18 16 23 23 H 1.48499 * 109.47108 * 239.99989 * 20 18 16 24 24 C 1.46957 * 120.65462 * 179.81159 * 9 7 4 25 25 H 1.09004 * 109.47179 * 299.99793 * 1 2 3 26 26 H 1.08995 * 109.47559 * 60.00123 * 1 2 3 27 27 H 1.09000 * 109.46881 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46870 * 240.00389 * 2 1 3 29 29 H 1.08995 * 109.47559 * 119.99876 * 2 1 3 30 30 H 1.09001 * 109.46817 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.47265 * 299.99814 * 6 4 3 32 32 H 1.08995 * 109.47178 * 60.00428 * 6 4 3 33 33 H 1.09002 * 109.58861 * 6.60251 * 10 9 7 34 34 H 1.08996 * 109.58519 * 246.32142 * 10 9 7 35 35 H 1.09003 * 109.49294 * 174.51508 * 11 10 9 36 36 H 1.08997 * 109.50161 * 294.61021 * 11 10 9 37 37 H 1.08994 * 109.45986 * 58.65006 * 12 11 10 38 38 H 1.09001 * 109.45959 * 178.62334 * 12 11 10 39 39 H 0.97003 * 120.00393 * 264.99866 * 15 13 12 40 40 H 0.96993 * 120.00461 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.46843 * 113.75468 * 24 9 7 42 42 H 1.08997 * 109.71602 * 353.46961 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8632 0.6018 -0.5146 6 6 3.9397 1.5004 1.4418 7 6 3.8341 2.7266 -0.7109 8 8 2.9855 3.5049 -1.0915 9 7 5.1379 2.9942 -0.9234 10 6 6.1774 2.0612 -0.4678 11 6 7.0836 1.7114 -1.6523 12 6 7.6252 3.0010 -2.2735 13 6 6.4604 3.8486 -2.7903 14 1 5.8938 3.2781 -3.5261 15 7 6.9815 5.0680 -3.4127 16 6 7.3789 5.0519 -4.7230 17 1 7.3079 4.1403 -5.2977 18 6 7.8721 6.2076 -5.3129 19 7 7.9583 7.3188 -4.6127 20 14 8.4137 6.1858 -7.1006 21 1 8.2165 4.8248 -7.6610 22 1 7.6049 7.1614 -7.8747 23 1 9.8496 6.5541 -7.1873 24 6 5.5471 4.2228 -1.6182 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.0263 1.5861 1.4415 31 1 3.5073 2.3588 1.9559 32 1 3.6480 0.5845 1.9556 33 1 5.7112 1.1537 -0.0839 34 1 6.7689 2.5291 0.3192 35 1 7.9150 1.0976 -1.3055 36 1 6.5109 1.1608 -2.3985 37 1 8.1770 3.5631 -1.5201 38 1 8.2898 2.7541 -3.1014 39 1 7.0450 5.8870 -2.8967 40 1 8.3026 8.1264 -5.0250 41 1 6.0868 4.8690 -0.9260 42 1 4.6662 4.7439 -1.9931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207430819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:34 Heat of formation + Delta-G solvation = -94.124873 kcal Electronic energy + Delta-G solvation = -21534.107617 eV Core-core repulsion = 18320.584987 eV Total energy + Delta-G solvation = -3213.522630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50288 -39.28882 -38.29660 -36.30603 -34.20891 -33.09424 -32.75552 -31.21963 -29.77959 -26.96460 -25.91825 -24.63579 -23.54141 -23.40064 -21.52823 -20.32477 -19.18677 -18.42095 -17.81042 -17.11536 -16.65733 -16.50041 -16.14259 -15.61990 -15.36722 -15.25015 -14.85592 -14.73535 -14.39095 -14.07754 -13.81344 -13.64289 -13.36459 -13.15792 -13.00866 -12.91057 -12.79013 -12.32090 -12.28300 -12.20761 -12.05622 -12.01425 -11.83867 -11.70760 -11.59708 -10.93991 -10.89797 -10.44931 -9.71756 -9.04832 -7.97279 -5.27063 1.44937 1.46908 1.51603 1.56444 1.68861 2.54072 2.82459 3.35538 3.43196 3.75449 3.87477 3.96556 4.04076 4.06650 4.12249 4.21373 4.25535 4.34035 4.35069 4.50090 4.55045 4.62595 4.74887 4.80175 4.81620 4.85675 4.90993 5.03147 5.06647 5.15981 5.22789 5.27840 5.39856 5.40826 5.49783 5.58963 6.13126 6.24593 6.42347 7.11245 7.30246 8.02911 8.27232 9.26307 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.003904 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.740383 B = 7169.693839 C = 7495.514059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.396 6.396 4 C 0.078 3.922 5 H 0.117 0.883 6 C -0.171 4.171 7 C 0.502 3.498 8 O -0.583 6.583 9 N -0.599 5.599 10 C 0.096 3.904 11 C -0.125 4.125 12 C -0.128 4.128 13 C 0.167 3.833 14 H 0.029 0.971 15 N -0.736 5.736 16 C -0.239 4.239 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.290 1.290 24 C 0.119 3.881 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.071 0.929 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -20.881 14.739 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.315 6.315 4 C 0.017 3.983 5 H 0.134 0.866 6 C -0.228 4.228 7 C 0.291 3.709 8 O -0.463 6.463 9 N -0.333 5.333 10 C -0.025 4.025 11 C -0.164 4.164 12 C -0.168 4.168 13 C 0.058 3.942 14 H 0.048 0.952 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.223 1.223 23 H -0.217 1.217 24 C -0.005 4.005 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.544 -20.401 14.370 25.798 hybrid contribution 0.395 1.041 -1.209 1.643 sum -6.149 -19.360 13.162 24.204 Atomic orbital electron populations 1.21777 0.93350 1.03489 1.02279 1.22855 0.96227 0.82148 1.01707 1.88039 1.19432 1.28836 1.95198 1.21974 0.83420 0.94783 0.98137 0.86593 1.22422 1.03293 1.04341 0.92779 1.21345 0.81867 0.88617 0.79062 1.90689 1.51365 1.51262 1.52951 1.48123 1.05840 1.22465 1.56857 1.22366 0.89223 0.93684 0.97192 1.21928 1.00164 0.96746 0.97542 1.22073 0.98145 0.96632 0.99974 1.20645 0.93224 0.88106 0.92249 0.95249 1.42503 1.76084 1.08700 1.10354 1.19585 1.33229 0.95678 0.88578 0.90837 1.25571 1.03197 0.95529 1.02411 1.69823 1.53785 1.00874 1.37448 0.85072 0.77144 0.77603 0.79931 1.19056 1.22276 1.21670 1.21586 0.98149 0.86653 0.94147 0.92264 0.93543 0.88389 0.92391 0.90489 0.88211 0.92969 0.88450 0.85958 0.88997 0.87408 0.91953 0.92301 0.93469 0.79487 0.93956 0.91055 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 10.28 71.98 0.74 -1.55 16 2 C 0.05 0.74 6.47 71.98 0.47 1.20 16 3 O -0.40 -10.13 9.53 -129.99 -1.24 -11.37 16 4 C 0.08 1.63 2.30 29.85 0.07 1.70 16 5 H 0.12 1.66 7.08 -2.39 -0.02 1.64 16 6 C -0.17 -2.39 9.10 71.98 0.66 -1.73 16 7 C 0.50 15.99 7.12 87.65 0.62 16.61 16 8 O -0.58 -25.57 15.93 15.96 0.25 -25.32 16 9 N -0.60 -17.14 2.98 -818.76 -2.44 -19.58 16 10 C 0.10 1.70 4.97 86.36 0.43 2.13 16 11 C -0.13 -2.57 6.08 30.67 0.19 -2.39 16 12 C -0.13 -4.12 5.46 30.62 0.17 -3.95 16 13 C 0.17 6.80 2.92 45.08 0.13 6.93 16 14 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 15 N -0.74 -38.14 5.12 -322.53 -1.65 -39.79 16 16 C -0.24 -13.54 9.93 84.03 0.83 -12.70 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 19 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 20 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 C 0.12 4.42 5.90 86.37 0.51 4.92 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.08 0.78 7.87 -2.39 -0.02 0.77 16 30 H 0.10 0.97 5.41 -2.39 -0.01 0.96 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.83 7.87 -2.39 -0.02 0.81 16 33 H 0.12 1.24 4.66 -2.39 -0.01 1.23 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.37 20.69 7.80 -92.71 -0.72 19.97 16 40 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.06 2.50 7.02 -2.39 -0.02 2.48 16 Total: -1.00 -78.54 334.95 2.79 -75.76 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.28 Total: 24.08 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.28 Total: 7.27 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -3.81 Total: -119.32 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.98 Total: -36.69 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -78.54 2.79 -75.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.369 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds