Wall clock time and date at job start Mon Mar 30 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47199 * 2 1 4 4 C 1.42905 * 114.00060 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47038 * 330.00041 * 4 3 2 6 6 C 1.53003 * 109.47325 * 89.99725 * 4 3 2 7 7 C 1.50701 * 109.47077 * 209.99781 * 4 3 2 8 8 O 1.21272 * 119.99830 * 344.40878 * 7 4 3 9 9 N 1.34777 * 119.99612 * 164.40285 * 7 4 3 10 10 C 1.46918 * 120.63152 * 4.12056 * 9 7 4 11 11 C 1.53635 * 108.54363 * 126.36866 * 10 9 7 12 12 C 1.53040 * 109.23803 * 54.85494 * 11 10 9 13 13 C 1.53042 * 109.54172 * 298.51154 * 12 11 10 14 14 H 1.09000 * 109.52203 * 301.40732 * 13 12 11 15 15 N 1.46495 * 109.50243 * 181.31826 * 13 12 11 16 16 C 1.36935 * 119.99651 * 85.16029 * 15 13 12 17 17 H 1.07995 * 120.00663 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99742 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99999 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46784 * 90.00546 * 20 18 16 22 22 H 1.48500 * 109.47096 * 210.00043 * 20 18 16 23 23 H 1.48496 * 109.47280 * 330.00541 * 20 18 16 24 24 C 1.46924 * 120.62753 * 184.40148 * 9 7 4 25 25 H 1.09007 * 109.47104 * 300.00498 * 1 2 3 26 26 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46909 * 59.99733 * 1 2 3 28 28 H 1.08994 * 109.47243 * 120.00018 * 2 1 3 29 29 H 1.09000 * 109.47128 * 240.00399 * 2 1 3 30 30 H 1.08995 * 109.47129 * 181.44367 * 6 4 3 31 31 H 1.09004 * 109.47059 * 301.44905 * 6 4 3 32 32 H 1.09000 * 109.46635 * 61.44535 * 6 4 3 33 33 H 1.08999 * 109.58978 * 246.19928 * 10 9 7 34 34 H 1.09002 * 109.59170 * 6.62921 * 10 9 7 35 35 H 1.08997 * 109.63033 * 294.86459 * 11 10 9 36 36 H 1.08996 * 109.45762 * 174.74281 * 11 10 9 37 37 H 1.08999 * 109.46057 * 178.49498 * 12 11 10 38 38 H 1.08993 * 109.46448 * 58.53393 * 12 11 10 39 39 H 0.96997 * 119.99844 * 265.16511 * 15 13 12 40 40 H 0.97000 * 120.01032 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.58621 * 353.37454 * 24 9 7 42 42 H 1.08997 * 109.58984 * 113.65692 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6015 0.5129 6 6 3.9388 1.5005 -1.4433 7 6 3.8348 2.7263 0.7098 8 8 3.0123 3.5923 0.9202 9 7 5.1101 2.8962 1.1113 10 6 6.1370 1.8974 0.7851 11 6 7.3088 2.6097 0.0923 12 6 7.8033 3.7510 0.9840 13 6 6.6763 4.7659 1.1886 14 1 6.3512 5.1493 0.2214 15 7 7.1600 5.8736 2.0163 16 6 7.8189 6.9247 1.4363 17 1 7.9815 6.9372 0.3687 18 6 8.2768 7.9746 2.2204 19 7 8.0781 7.9597 3.5214 20 14 9.1762 9.4081 1.4294 21 1 8.1959 10.4535 1.0404 22 1 10.1486 9.9769 2.3968 23 1 9.8989 8.9334 0.2221 24 6 5.4986 4.0807 1.8889 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 5.0271 1.5608 -1.4438 31 1 3.6246 0.5962 -1.9646 32 1 3.5263 2.3734 -1.9493 33 1 6.4860 1.4196 1.7005 34 1 5.7170 1.1465 0.1158 35 1 6.9779 3.0129 -0.8648 36 1 8.1190 1.8995 -0.0726 37 1 8.6521 4.2420 0.5080 38 1 8.1108 3.3502 1.9498 39 1 7.0136 5.8625 2.9751 40 1 8.3984 8.6931 4.0695 41 1 4.6570 4.7710 1.9483 42 1 5.7941 3.7777 2.8934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207430820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:36 Heat of formation + Delta-G solvation = -72.202000 kcal Electronic energy + Delta-G solvation = -21538.120120 eV Core-core repulsion = 18325.548137 eV Total energy + Delta-G solvation = -3212.571983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29912 -38.23474 -36.99363 -34.58292 -32.78070 -32.02623 -31.22519 -30.29218 -28.21743 -25.75182 -24.21887 -23.46134 -22.72515 -22.06508 -20.23607 -18.89427 -17.46196 -17.19950 -16.78740 -15.94473 -15.54714 -15.10662 -14.61396 -14.30023 -14.17741 -13.77681 -13.55581 -13.35859 -13.14638 -12.89786 -12.80652 -12.44414 -12.41985 -12.22982 -12.04466 -11.58055 -11.26754 -11.08501 -10.95114 -10.90686 -10.65935 -10.40833 -10.35924 -10.08069 -9.99414 -9.70926 -9.34977 -8.91044 -8.40004 -6.98656 -5.77317 -3.06971 2.71213 2.78855 3.44114 3.49118 3.50530 3.69550 4.41397 4.58698 4.64054 4.74062 4.87187 4.89302 4.99411 5.08552 5.10757 5.22228 5.28032 5.42571 5.48757 5.52594 5.56649 5.65217 5.66336 5.74684 5.80241 5.89267 5.92205 6.03704 6.15840 6.24064 6.38503 6.53683 6.66790 6.84890 6.96725 7.04495 7.56086 7.69712 8.32829 8.40823 9.51816 10.07087 10.42187 11.45198 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.003824 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.670821 B = 7319.921775 C = 7645.869955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.074 3.926 5 H 0.081 0.919 6 C -0.174 4.174 7 C 0.513 3.487 8 O -0.520 6.520 9 N -0.604 5.604 10 C 0.101 3.899 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.169 3.831 14 H 0.050 0.950 15 N -0.721 5.721 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.107 3.893 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.093 0.907 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -20.436 -7.971 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.012 3.988 5 H 0.099 0.901 6 C -0.232 4.232 7 C 0.299 3.701 8 O -0.394 6.394 9 N -0.340 5.340 10 C -0.022 4.022 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.068 0.932 15 N -0.362 5.362 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.015 4.015 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.001 -19.651 -7.950 22.657 hybrid contribution 0.828 0.496 -0.054 0.966 sum -7.173 -19.155 -8.003 21.964 Atomic orbital electron populations 1.21728 0.93465 1.02099 1.03510 1.22582 0.95970 0.83743 0.99962 1.88076 1.18561 1.26065 1.94949 1.21891 0.83430 0.96647 0.96819 0.90077 1.22329 1.02121 1.03767 0.94973 1.20291 0.82188 0.88348 0.79237 1.90718 1.50314 1.43407 1.54991 1.48055 1.07512 1.23489 1.54916 1.22006 0.89340 0.90716 1.00157 1.22015 0.96909 0.98680 0.99579 1.22280 1.00758 0.95839 0.98887 1.20474 0.90569 0.88267 0.94929 0.93158 1.42308 1.67595 1.19651 1.06658 1.19205 1.28218 0.97196 0.92380 0.91153 1.24750 1.01737 0.98815 0.95522 1.69656 1.51607 1.33183 1.03551 0.86186 0.79205 0.82774 0.77993 1.21657 1.21771 1.20768 1.22015 0.99504 0.86182 0.93848 0.91630 0.91103 0.91714 0.93329 0.93282 0.90373 0.91345 0.90852 0.91237 0.90154 0.91747 0.91293 0.91507 0.92440 0.78189 0.93451 0.88875 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.49 6.47 37.16 0.24 0.73 16 3 O -0.36 -4.80 9.57 -54.64 -0.52 -5.32 16 4 C 0.07 0.87 2.28 -27.88 -0.06 0.81 16 5 H 0.08 0.74 6.92 -51.93 -0.36 0.38 16 6 C -0.17 -1.68 9.17 37.16 0.34 -1.34 16 7 C 0.51 8.30 7.00 -10.98 -0.08 8.22 16 8 O -0.52 -10.90 15.99 -13.85 -0.22 -11.12 16 9 N -0.60 -9.04 2.97 -172.50 -0.51 -9.55 16 10 C 0.10 1.11 5.72 -3.48 -0.02 1.09 16 11 C -0.13 -1.62 6.10 -26.38 -0.16 -1.78 16 12 C -0.14 -2.29 5.46 -26.69 -0.15 -2.44 16 13 C 0.17 3.37 2.92 -67.81 -0.20 3.17 16 14 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 15 N -0.72 -18.09 5.12 -53.31 -0.27 -18.36 16 16 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 20 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.11 1.94 5.91 -3.71 -0.02 1.92 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.05 0.35 7.84 -51.93 -0.41 -0.06 16 30 H 0.08 0.66 6.07 -51.93 -0.32 0.34 16 31 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.66 4.34 -51.93 -0.23 0.43 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.09 1.93 7.00 -51.92 -0.36 1.57 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -33.66 335.85 -7.75 -41.41 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.01 Total: 5.56 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 0.03 Total: 2.33 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.06 Total: -55.39 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.74 Total: -16.44 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.66 -7.75 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.793 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds