Wall clock time and date at job start Mon Mar 30 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47199 * 2 1 4 4 C 1.42905 * 114.00060 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47038 * 330.00041 * 4 3 2 6 6 C 1.53003 * 109.47325 * 89.99725 * 4 3 2 7 7 C 1.50701 * 109.47077 * 209.99781 * 4 3 2 8 8 O 1.21272 * 119.99830 * 344.40878 * 7 4 3 9 9 N 1.34777 * 119.99612 * 164.40285 * 7 4 3 10 10 C 1.46918 * 120.63152 * 4.12056 * 9 7 4 11 11 C 1.53635 * 108.54363 * 126.36866 * 10 9 7 12 12 C 1.53040 * 109.23803 * 54.85494 * 11 10 9 13 13 C 1.53042 * 109.54172 * 298.51154 * 12 11 10 14 14 H 1.09000 * 109.52203 * 301.40732 * 13 12 11 15 15 N 1.46495 * 109.50243 * 181.31826 * 13 12 11 16 16 C 1.36935 * 119.99651 * 85.16029 * 15 13 12 17 17 H 1.07995 * 120.00663 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99742 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99999 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46784 * 90.00546 * 20 18 16 22 22 H 1.48500 * 109.47096 * 210.00043 * 20 18 16 23 23 H 1.48496 * 109.47280 * 330.00541 * 20 18 16 24 24 C 1.46924 * 120.62753 * 184.40148 * 9 7 4 25 25 H 1.09007 * 109.47104 * 300.00498 * 1 2 3 26 26 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46909 * 59.99733 * 1 2 3 28 28 H 1.08994 * 109.47243 * 120.00018 * 2 1 3 29 29 H 1.09000 * 109.47128 * 240.00399 * 2 1 3 30 30 H 1.08995 * 109.47129 * 181.44367 * 6 4 3 31 31 H 1.09004 * 109.47059 * 301.44905 * 6 4 3 32 32 H 1.09000 * 109.46635 * 61.44535 * 6 4 3 33 33 H 1.08999 * 109.58978 * 246.19928 * 10 9 7 34 34 H 1.09002 * 109.59170 * 6.62921 * 10 9 7 35 35 H 1.08997 * 109.63033 * 294.86459 * 11 10 9 36 36 H 1.08996 * 109.45762 * 174.74281 * 11 10 9 37 37 H 1.08999 * 109.46057 * 178.49498 * 12 11 10 38 38 H 1.08993 * 109.46448 * 58.53393 * 12 11 10 39 39 H 0.96997 * 119.99844 * 265.16511 * 15 13 12 40 40 H 0.97000 * 120.01032 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.58621 * 353.37454 * 24 9 7 42 42 H 1.08997 * 109.58984 * 113.65692 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6015 0.5129 6 6 3.9388 1.5005 -1.4433 7 6 3.8348 2.7263 0.7098 8 8 3.0123 3.5923 0.9202 9 7 5.1101 2.8962 1.1113 10 6 6.1370 1.8974 0.7851 11 6 7.3088 2.6097 0.0923 12 6 7.8033 3.7510 0.9840 13 6 6.6763 4.7659 1.1886 14 1 6.3512 5.1493 0.2214 15 7 7.1600 5.8736 2.0163 16 6 7.8189 6.9247 1.4363 17 1 7.9815 6.9372 0.3687 18 6 8.2768 7.9746 2.2204 19 7 8.0781 7.9597 3.5214 20 14 9.1762 9.4081 1.4294 21 1 8.1959 10.4535 1.0404 22 1 10.1486 9.9769 2.3968 23 1 9.8989 8.9334 0.2221 24 6 5.4986 4.0807 1.8889 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 5.0271 1.5608 -1.4438 31 1 3.6246 0.5962 -1.9646 32 1 3.5263 2.3734 -1.9493 33 1 6.4860 1.4196 1.7005 34 1 5.7170 1.1465 0.1158 35 1 6.9779 3.0129 -0.8648 36 1 8.1190 1.8995 -0.0726 37 1 8.6521 4.2420 0.5080 38 1 8.1108 3.3502 1.9498 39 1 7.0136 5.8625 2.9751 40 1 8.3984 8.6931 4.0695 41 1 4.6570 4.7710 1.9483 42 1 5.7941 3.7777 2.8934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207430820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:36 Heat of formation + Delta-G solvation = -95.426632 kcal Electronic energy + Delta-G solvation = -21539.127216 eV Core-core repulsion = 18325.548137 eV Total energy + Delta-G solvation = -3213.579078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49498 -39.28847 -38.29720 -36.28111 -34.14493 -33.15006 -32.72924 -31.20864 -29.83168 -26.92130 -25.94785 -24.60182 -23.54576 -23.37509 -21.64332 -20.18254 -19.15804 -18.50915 -17.84598 -16.88699 -16.82639 -16.50184 -16.04502 -15.73828 -15.40285 -15.21691 -14.89118 -14.69321 -14.41541 -14.10567 -13.79188 -13.60732 -13.35186 -13.15600 -12.97483 -12.88190 -12.79994 -12.38620 -12.27573 -12.19043 -12.09735 -12.01901 -11.84212 -11.71132 -11.62615 -10.93094 -10.89441 -10.46012 -9.71443 -9.04527 -7.96965 -5.26693 1.44978 1.47750 1.50218 1.55497 1.68706 2.54343 2.83153 3.35640 3.42760 3.76630 3.86360 3.96550 4.04803 4.06800 4.12279 4.21823 4.24886 4.34493 4.35411 4.50751 4.55394 4.59169 4.74645 4.78715 4.81024 4.84729 4.91143 5.03551 5.06335 5.16143 5.22488 5.28310 5.40351 5.41624 5.49856 5.59461 6.13271 6.24766 6.42355 7.10911 7.30461 8.03261 8.27646 9.26421 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.003824 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.670821 B = 7319.921775 C = 7645.869955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.397 6.397 4 C 0.080 3.920 5 H 0.121 0.879 6 C -0.170 4.170 7 C 0.503 3.497 8 O -0.583 6.583 9 N -0.600 5.600 10 C 0.096 3.904 11 C -0.124 4.124 12 C -0.128 4.128 13 C 0.167 3.833 14 H 0.029 0.971 15 N -0.736 5.736 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.118 3.882 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.055 0.945 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 -23.724 -9.709 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.316 6.316 4 C 0.019 3.981 5 H 0.138 0.862 6 C -0.227 4.227 7 C 0.292 3.708 8 O -0.462 6.462 9 N -0.334 5.334 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.168 4.168 13 C 0.058 3.942 14 H 0.047 0.953 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.192 1.192 24 C -0.006 4.006 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.205 0.795 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.075 -23.015 -9.743 25.975 hybrid contribution 0.475 1.455 0.469 1.601 sum -6.600 -21.561 -9.274 24.381 Atomic orbital electron populations 1.21783 0.93393 1.03499 1.02259 1.22869 0.96182 0.82094 1.01834 1.88051 1.19406 1.28940 1.95202 1.21985 0.83423 0.94875 0.97847 0.86179 1.22343 1.02953 1.04155 0.93241 1.21347 0.81672 0.89394 0.78424 1.90686 1.52109 1.45893 1.57506 1.48141 1.08444 1.22914 1.53914 1.22391 0.87893 0.90159 1.02038 1.21985 0.98466 0.97564 0.98250 1.22065 0.98339 0.96371 1.00010 1.20638 0.92404 0.87976 0.93172 0.95275 1.42495 1.67766 1.20824 1.06552 1.19547 1.27264 0.97772 0.92572 0.90877 1.25568 1.03410 1.01610 0.96096 1.69812 1.53304 1.33937 1.04879 0.85146 0.77854 0.79361 0.77443 1.21770 1.21935 1.19187 1.21590 0.97213 0.87187 0.94608 0.93387 0.88334 0.92504 0.91948 0.90677 0.88666 0.88233 0.93450 0.89182 0.86067 0.91805 0.87441 0.93477 0.92321 0.79491 0.93947 0.92592 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 0.70 6.47 71.98 0.47 1.16 16 3 O -0.40 -10.03 9.57 -130.42 -1.25 -11.28 16 4 C 0.08 1.67 2.28 29.85 0.07 1.74 16 5 H 0.12 1.56 6.92 -2.39 -0.02 1.54 16 6 C -0.17 -2.66 9.17 71.98 0.66 -2.00 16 7 C 0.50 16.01 7.00 87.66 0.61 16.63 16 8 O -0.58 -25.58 15.99 15.55 0.25 -25.34 16 9 N -0.60 -17.23 2.97 -818.06 -2.43 -19.65 16 10 C 0.10 1.71 5.72 86.51 0.49 2.21 16 11 C -0.12 -2.56 6.10 30.82 0.19 -2.37 16 12 C -0.13 -4.12 5.46 30.62 0.17 -3.95 16 13 C 0.17 6.83 2.92 45.07 0.13 6.97 16 14 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 15 N -0.74 -38.22 5.12 -322.58 -1.65 -39.87 16 16 C -0.24 -13.62 9.93 84.03 0.83 -12.79 16 17 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 18 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 20 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 C 0.12 4.40 5.91 86.36 0.51 4.91 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 29 H 0.08 0.74 7.84 -2.39 -0.02 0.72 16 30 H 0.09 1.14 6.07 -2.39 -0.01 1.12 16 31 H 0.10 0.98 7.84 -2.38 -0.02 0.96 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.12 1.25 4.34 -2.39 -0.01 1.24 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.37 20.71 7.80 -92.71 -0.72 19.98 16 40 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.06 2.49 7.00 -2.38 -0.02 2.48 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -78.66 335.85 2.85 -75.81 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.28 Total: 24.23 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.34 Total: 7.14 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -3.80 Total: -119.55 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.00 Total: -36.61 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -78.66 2.85 -75.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.616 kcal (2) G-P(sol) polarization free energy of solvation -78.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds