Wall clock time and date at job start Mon Mar 30 2020 01:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47136 * 2 1 4 4 C 1.42898 * 113.99941 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47512 * 329.99759 * 4 3 2 6 6 C 1.52997 * 109.47188 * 90.00004 * 4 3 2 7 7 C 1.50700 * 109.46775 * 209.99857 * 4 3 2 8 8 O 1.21279 * 120.00627 * 359.97438 * 7 4 3 9 9 N 1.34786 * 119.99749 * 180.02562 * 7 4 3 10 10 C 1.47020 * 125.64442 * 179.97438 * 9 7 4 11 11 C 1.54328 * 107.26685 * 178.97586 * 10 9 7 12 12 H 1.08994 * 110.87301 * 96.24656 * 11 10 9 13 13 C 1.53002 * 110.71793 * 219.44384 * 11 10 9 14 14 C 1.55159 * 102.94376 * 337.80508 * 11 10 9 15 15 H 1.08995 * 111.00475 * 277.39131 * 14 11 10 16 16 N 1.46499 * 111.00303 * 153.57692 * 14 11 10 17 17 C 1.36931 * 120.00122 * 158.18244 * 16 14 11 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47461 * 125.62949 * 0.02562 * 9 7 4 26 26 H 1.08999 * 109.46909 * 60.00440 * 1 2 3 27 27 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47660 * 300.00627 * 1 2 3 29 29 H 1.09001 * 109.47843 * 239.99877 * 2 1 3 30 30 H 1.08999 * 109.46909 * 119.99559 * 2 1 3 31 31 H 1.09003 * 109.47347 * 59.99815 * 6 4 3 32 32 H 1.09000 * 109.47105 * 179.97438 * 6 4 3 33 33 H 1.09003 * 109.47099 * 299.99478 * 6 4 3 34 34 H 1.08996 * 109.88184 * 59.56311 * 10 9 7 35 35 H 1.09000 * 110.01503 * 298.45967 * 10 9 7 36 36 H 1.09000 * 109.47257 * 173.52176 * 13 11 10 37 37 H 1.08997 * 109.47346 * 293.52032 * 13 11 10 38 38 H 1.09000 * 109.47346 * 53.52324 * 13 11 10 39 39 H 0.97001 * 119.99790 * 338.17761 * 16 14 11 40 40 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 41 41 H 1.08992 * 110.35226 * 85.25011 * 25 9 7 42 42 H 1.09004 * 110.40711 * 322.91329 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6018 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8340 2.7265 0.7110 8 8 2.9852 3.4605 1.1710 9 7 5.1382 3.0441 0.8342 10 6 5.6689 4.2430 1.4993 11 6 7.2082 4.1690 1.4170 12 1 7.5800 4.7454 0.5700 13 6 7.8439 4.6553 2.7210 14 6 7.4727 2.6543 1.2090 15 1 7.4576 2.1209 2.1594 16 7 8.7392 2.4341 0.5064 17 6 9.3782 1.2273 0.6089 18 1 8.9483 0.4378 1.2074 19 6 10.5785 1.0188 -0.0563 20 7 11.1022 1.9809 -0.7861 21 14 11.4462 -0.6300 0.0773 22 1 12.6953 -0.5985 -0.7252 23 1 11.7783 -0.9008 1.4993 24 1 10.5551 -1.7015 -0.4356 25 6 6.2684 2.2467 0.3231 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.5076 2.3586 -1.9559 32 1 5.0264 1.5867 -1.4412 33 1 3.6482 0.5841 -1.9555 34 1 5.3537 4.2583 2.5426 35 1 5.3133 5.1396 0.9915 36 1 8.9203 4.4876 2.6851 37 1 7.6462 5.7198 2.8467 38 1 7.4183 4.1051 3.5601 39 1 9.1251 3.1431 -0.0315 40 1 11.9409 1.8350 -1.2513 41 1 6.4644 2.4924 -0.7206 42 1 6.0618 1.1819 0.4307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214186023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:04 Heat of formation + Delta-G solvation = -72.837980 kcal Electronic energy + Delta-G solvation = -21535.002812 eV Core-core repulsion = 18322.403251 eV Total energy + Delta-G solvation = -3212.599561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11417 -38.29509 -37.09571 -34.15245 -33.08287 -31.95242 -30.79042 -30.04260 -27.61299 -26.36497 -24.45663 -23.69831 -22.75888 -21.39111 -20.01818 -19.25938 -17.31907 -17.09618 -16.60861 -15.83510 -15.72278 -15.48556 -14.60554 -14.08218 -13.80668 -13.63410 -13.40836 -13.12756 -13.01449 -12.88254 -12.64069 -12.51786 -12.18269 -12.02895 -11.86802 -11.66897 -11.40130 -11.17125 -11.09773 -11.02052 -10.72123 -10.64477 -10.31601 -10.00158 -9.94519 -9.80271 -9.35916 -9.05163 -8.36680 -7.14542 -5.90636 -3.21747 2.76623 2.88607 3.35536 3.40826 3.41718 3.84577 4.45199 4.58574 4.85054 4.86747 5.00370 5.03760 5.08239 5.12611 5.20352 5.21236 5.41681 5.50142 5.58637 5.65095 5.67055 5.74339 5.76233 5.80343 5.88801 5.96777 5.98489 6.08384 6.19601 6.20782 6.31521 6.42713 6.48829 6.58514 6.81917 7.05352 7.57084 7.74696 8.26467 8.36932 9.38819 9.92096 10.27227 11.31081 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.004832 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.203024 B = 5792.943759 C = 6954.572675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.077 3.923 5 H 0.086 0.914 6 C -0.178 4.178 7 C 0.528 3.472 8 O -0.535 6.535 9 N -0.612 5.612 10 C 0.118 3.882 11 C -0.114 4.114 12 H 0.085 0.915 13 C -0.134 4.134 14 C 0.177 3.823 15 H 0.067 0.933 16 N -0.710 5.710 17 C -0.251 4.251 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.068 3.932 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 -1.252 1.691 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.279 6.279 4 C 0.016 3.984 5 H 0.103 0.897 6 C -0.236 4.236 7 C 0.315 3.685 8 O -0.411 6.411 9 N -0.347 5.347 10 C -0.004 4.004 11 C -0.134 4.134 12 H 0.103 0.897 13 C -0.192 4.192 14 C 0.064 3.936 15 H 0.085 0.915 16 N -0.349 5.349 17 C -0.382 4.382 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.057 4.057 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.182 -0.895 1.950 14.343 hybrid contribution 0.853 -1.023 -0.298 1.364 sum -13.329 -1.917 1.651 13.567 Atomic orbital electron populations 1.21717 0.93571 1.02066 1.03307 1.22575 0.95788 0.83754 1.00154 1.88018 1.18723 1.26143 1.94989 1.21781 0.83127 0.96550 0.96953 0.89672 1.22381 1.03210 1.03289 0.94692 1.19998 0.81157 0.87248 0.80089 1.90678 1.49591 1.51994 1.48860 1.48444 1.04951 1.24645 1.56656 1.21968 0.93603 0.87490 0.97372 1.22504 0.92563 0.98794 0.99518 0.89691 1.21665 1.01830 0.99928 0.95757 1.21383 0.85884 0.92008 0.94319 0.91468 1.42290 1.20090 1.15271 1.57280 1.19186 1.02510 0.91009 1.25456 0.91045 1.24757 0.97949 0.97851 0.99732 1.69649 1.20769 1.32083 1.35063 0.86274 0.79017 0.83399 0.77493 1.21623 1.21139 1.21154 1.23666 0.86881 0.95168 1.00015 0.91820 0.91126 0.91734 0.93184 0.93287 0.91403 0.89616 0.91453 0.91621 0.91936 0.91307 0.93168 0.92900 0.77809 0.93236 0.90790 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.15 0.38 -0.98 16 2 C 0.05 0.58 6.47 37.15 0.24 0.82 16 3 O -0.36 -5.33 9.52 -55.14 -0.52 -5.85 16 4 C 0.08 1.09 2.49 -27.88 -0.07 1.02 16 5 H 0.09 1.07 7.49 -51.93 -0.39 0.68 16 6 C -0.18 -2.23 9.34 37.16 0.35 -1.89 16 7 C 0.53 9.00 7.29 -10.98 -0.08 8.92 16 8 O -0.53 -10.96 16.83 -14.35 -0.24 -11.20 16 9 N -0.61 -9.77 3.32 -170.46 -0.57 -10.33 16 10 C 0.12 1.79 6.46 -3.06 -0.02 1.77 16 11 C -0.11 -1.74 3.19 -88.78 -0.28 -2.03 16 12 H 0.08 1.33 7.99 -51.93 -0.42 0.92 16 13 C -0.13 -1.87 9.16 37.16 0.34 -1.53 16 14 C 0.18 3.17 3.15 -65.76 -0.21 2.96 16 15 H 0.07 1.24 8.02 -51.93 -0.42 0.83 16 16 N -0.71 -15.99 5.26 -51.33 -0.27 -16.26 16 17 C -0.25 -6.37 9.97 -15.06 -0.15 -6.52 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 21 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.07 1.11 4.83 -2.49 -0.01 1.10 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.47 7.87 -51.93 -0.41 0.06 16 30 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.10 4.99 -51.93 -0.26 0.85 16 33 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.07 0.97 7.76 -51.93 -0.40 0.57 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.39 9.36 7.73 -40.82 -0.32 9.05 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 1.25 7.07 -51.93 -0.37 0.88 16 42 H 0.07 1.07 7.36 -51.93 -0.38 0.69 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -30.35 340.43 -7.49 -37.84 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.11 Total: 6.82 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 0.39 Total: 3.39 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.11 Total: -52.18 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.77 Total: -17.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.35 -7.49 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214186023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.998 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds