Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47136 * 2 1 4 4 C 1.42898 * 113.99941 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47512 * 329.99759 * 4 3 2 6 6 C 1.52997 * 109.47188 * 90.00004 * 4 3 2 7 7 C 1.50700 * 109.46775 * 209.99857 * 4 3 2 8 8 O 1.21279 * 120.00627 * 359.97438 * 7 4 3 9 9 N 1.34786 * 119.99749 * 180.02562 * 7 4 3 10 10 C 1.47020 * 125.64442 * 179.97438 * 9 7 4 11 11 C 1.54328 * 107.26685 * 178.97586 * 10 9 7 12 12 H 1.08994 * 110.87301 * 96.24656 * 11 10 9 13 13 C 1.53002 * 110.71793 * 219.44384 * 11 10 9 14 14 C 1.55159 * 102.94376 * 337.80508 * 11 10 9 15 15 H 1.08995 * 111.00475 * 277.39131 * 14 11 10 16 16 N 1.46499 * 111.00303 * 153.57692 * 14 11 10 17 17 C 1.36931 * 120.00122 * 158.18244 * 16 14 11 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47461 * 125.62949 * 0.02562 * 9 7 4 26 26 H 1.08999 * 109.46909 * 60.00440 * 1 2 3 27 27 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47660 * 300.00627 * 1 2 3 29 29 H 1.09001 * 109.47843 * 239.99877 * 2 1 3 30 30 H 1.08999 * 109.46909 * 119.99559 * 2 1 3 31 31 H 1.09003 * 109.47347 * 59.99815 * 6 4 3 32 32 H 1.09000 * 109.47105 * 179.97438 * 6 4 3 33 33 H 1.09003 * 109.47099 * 299.99478 * 6 4 3 34 34 H 1.08996 * 109.88184 * 59.56311 * 10 9 7 35 35 H 1.09000 * 110.01503 * 298.45967 * 10 9 7 36 36 H 1.09000 * 109.47257 * 173.52176 * 13 11 10 37 37 H 1.08997 * 109.47346 * 293.52032 * 13 11 10 38 38 H 1.09000 * 109.47346 * 53.52324 * 13 11 10 39 39 H 0.97001 * 119.99790 * 338.17761 * 16 14 11 40 40 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 41 41 H 1.08992 * 110.35226 * 85.25011 * 25 9 7 42 42 H 1.09004 * 110.40711 * 322.91329 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6018 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8340 2.7265 0.7110 8 8 2.9852 3.4605 1.1710 9 7 5.1382 3.0441 0.8342 10 6 5.6689 4.2430 1.4993 11 6 7.2082 4.1690 1.4170 12 1 7.5800 4.7454 0.5700 13 6 7.8439 4.6553 2.7210 14 6 7.4727 2.6543 1.2090 15 1 7.4576 2.1209 2.1594 16 7 8.7392 2.4341 0.5064 17 6 9.3782 1.2273 0.6089 18 1 8.9483 0.4378 1.2074 19 6 10.5785 1.0188 -0.0563 20 7 11.1022 1.9809 -0.7861 21 14 11.4462 -0.6300 0.0773 22 1 12.6953 -0.5985 -0.7252 23 1 11.7783 -0.9008 1.4993 24 1 10.5551 -1.7015 -0.4356 25 6 6.2684 2.2467 0.3231 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.5076 2.3586 -1.9559 32 1 5.0264 1.5867 -1.4412 33 1 3.6482 0.5841 -1.9555 34 1 5.3537 4.2583 2.5426 35 1 5.3133 5.1396 0.9915 36 1 8.9203 4.4876 2.6851 37 1 7.6462 5.7198 2.8467 38 1 7.4183 4.1051 3.5601 39 1 9.1251 3.1431 -0.0315 40 1 11.9409 1.8350 -1.2513 41 1 6.4644 2.4924 -0.7206 42 1 6.0618 1.1819 0.4307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214186023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = -91.693952 kcal Electronic energy + Delta-G solvation = -21535.820469 eV Core-core repulsion = 18322.403251 eV Total energy + Delta-G solvation = -3213.417217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41332 -39.48321 -38.38869 -35.87299 -34.37788 -33.09387 -32.41717 -31.00846 -29.17163 -27.56920 -26.00061 -25.06730 -23.63386 -22.78568 -21.39747 -20.53579 -19.10304 -18.31450 -17.84276 -17.14611 -16.91637 -16.60388 -16.23528 -15.46595 -15.36858 -14.80532 -14.68611 -14.48573 -14.41067 -14.12057 -13.78182 -13.41420 -13.34309 -13.11950 -13.06278 -12.88028 -12.81513 -12.78511 -12.32423 -12.22526 -12.08288 -12.08042 -11.96380 -11.69671 -11.38492 -11.07155 -10.87951 -10.51437 -9.73008 -9.01661 -7.91625 -5.21239 1.46320 1.53198 1.54048 1.60092 1.68318 2.58221 2.80076 3.33303 3.40039 3.71677 3.77492 3.87170 3.92516 3.97603 4.17346 4.18312 4.31343 4.34348 4.46589 4.46877 4.57379 4.58773 4.66558 4.72340 4.85191 4.87893 4.89573 5.00659 5.07655 5.10618 5.18189 5.19089 5.26166 5.34518 5.46619 5.58051 6.09782 6.28753 6.43365 7.04578 7.37286 8.08121 8.32756 9.30879 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.004832 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.203024 B = 5792.943759 C = 6954.572675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.388 6.388 4 C 0.079 3.921 5 H 0.104 0.896 6 C -0.171 4.171 7 C 0.523 3.477 8 O -0.574 6.574 9 N -0.608 5.608 10 C 0.119 3.881 11 C -0.103 4.103 12 H 0.081 0.919 13 C -0.129 4.129 14 C 0.170 3.830 15 H 0.066 0.934 16 N -0.719 5.719 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.066 4.066 20 N -0.966 5.966 21 Si 0.966 3.034 22 H -0.301 1.301 23 H -0.280 1.280 24 H -0.276 1.276 25 C 0.082 3.918 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.069 0.931 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.571 -2.528 2.055 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.307 6.307 4 C 0.018 3.982 5 H 0.122 0.878 6 C -0.229 4.229 7 C 0.312 3.688 8 O -0.454 6.454 9 N -0.342 5.342 10 C -0.004 4.004 11 C -0.123 4.123 12 H 0.099 0.901 13 C -0.187 4.187 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.357 5.357 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.259 4.259 20 N -0.616 5.616 21 Si 0.796 3.204 22 H -0.227 1.227 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.044 4.044 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.210 0.790 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.170 -2.189 2.339 15.505 hybrid contribution 1.053 -0.597 -0.358 1.262 sum -14.118 -2.785 1.981 14.526 Atomic orbital electron populations 1.21753 0.92599 1.03563 1.02573 1.22867 0.96672 0.82225 1.01396 1.87997 1.18836 1.28688 1.95157 1.21818 0.83436 0.95390 0.97536 0.87812 1.22327 1.02657 1.04081 0.93788 1.20618 0.80775 0.87889 0.79543 1.90654 1.50500 1.53534 1.50673 1.48459 1.04810 1.24688 1.56270 1.22010 0.93082 0.87503 0.97793 1.22410 0.92848 0.96829 1.00212 0.90113 1.21623 1.00378 1.01523 0.95150 1.21529 0.84630 0.93967 0.93909 0.91643 1.42373 1.21545 1.14214 1.57611 1.19566 1.02103 0.91880 1.23822 0.90207 1.25457 0.99177 1.00753 1.00497 1.69796 1.21055 1.33901 1.36816 0.85325 0.77583 0.80215 0.77290 1.22724 1.20651 1.20220 1.23394 0.86044 0.95761 0.99171 0.92168 0.88495 0.92859 0.91417 0.92460 0.92339 0.90056 0.89191 0.90979 0.91489 0.93181 0.90954 0.92092 0.79021 0.94059 0.91236 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.04 0.86 6.47 71.98 0.47 1.32 16 3 O -0.39 -10.92 9.52 -129.94 -1.24 -12.15 16 4 C 0.08 2.10 2.49 29.85 0.07 2.17 16 5 H 0.10 2.33 7.49 -2.39 -0.02 2.31 16 6 C -0.17 -3.96 9.34 71.98 0.67 -3.28 16 7 C 0.52 17.27 7.29 87.66 0.64 17.91 16 8 O -0.57 -23.30 16.83 16.01 0.27 -23.03 16 9 N -0.61 -18.59 3.32 -811.61 -2.70 -21.28 16 10 C 0.12 3.41 6.46 86.73 0.56 3.97 16 11 C -0.10 -3.04 3.19 -9.60 -0.03 -3.07 16 12 H 0.08 2.47 7.99 -2.39 -0.02 2.46 16 13 C -0.13 -3.41 9.16 71.98 0.66 -2.75 16 14 C 0.17 5.91 3.15 46.40 0.15 6.06 16 15 H 0.07 2.32 8.02 -2.39 -0.02 2.30 16 16 N -0.72 -32.04 5.26 -316.31 -1.66 -33.71 16 17 C -0.24 -12.09 9.97 84.03 0.84 -11.25 16 18 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 19 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 20 N -0.97 -55.33 13.06 21.65 0.28 -55.04 16 21 Si 0.97 43.03 29.55 68.60 2.03 45.05 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 C 0.08 2.52 4.83 86.86 0.42 2.94 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 30 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.94 4.99 -2.39 -0.01 1.93 16 33 H 0.09 1.66 7.87 -2.39 -0.02 1.64 16 34 H 0.07 2.01 7.76 -2.39 -0.02 1.99 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.50 8.06 -2.39 -0.02 1.48 16 39 H 0.38 18.34 7.73 -92.71 -0.72 17.62 16 40 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 41 H 0.07 2.26 7.07 -2.39 -0.02 2.24 16 42 H 0.08 2.32 7.36 -2.38 -0.02 2.30 16 Total: -1.00 -64.53 340.43 2.91 -61.62 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.28 Total: 29.24 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.65 Total: 9.31 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.08 Total: -110.04 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.97 Total: -35.19 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.53 2.91 -61.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214186023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.075 kcal (2) G-P(sol) polarization free energy of solvation -64.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds