Wall clock time and date at job start Mon Mar 30 2020 01:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42890 * 109.47438 * 2 1 4 4 C 1.42898 * 114.00555 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47459 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47067 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99990 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00100 * 180.02562 * 6 5 4 9 9 C 1.47018 * 125.64981 * 179.97438 * 8 6 5 10 10 C 1.54325 * 107.40412 * 178.82520 * 9 8 6 11 11 H 1.09000 * 110.72188 * 96.24097 * 10 9 8 12 12 C 1.52995 * 110.72304 * 219.52316 * 10 9 8 13 13 C 1.55405 * 102.82616 * 337.97548 * 10 9 8 14 14 H 1.09000 * 110.89538 * 277.26533 * 13 10 9 15 15 N 1.46505 * 111.03913 * 153.47072 * 13 10 9 16 16 C 1.36935 * 120.00217 * 161.23025 * 15 13 10 17 17 H 1.08006 * 119.99642 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00007 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99572 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00139 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47224 * 90.00046 * 20 18 16 22 22 H 1.48503 * 109.47388 * 210.00158 * 20 18 16 23 23 H 1.48501 * 109.47319 * 330.00053 * 20 18 16 24 24 C 1.47426 * 125.64500 * 359.95253 * 8 6 5 25 25 H 1.08995 * 109.47373 * 300.00095 * 1 2 3 26 26 H 1.09003 * 109.46982 * 60.00307 * 1 2 3 27 27 H 1.09008 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47141 * 239.99424 * 2 1 3 29 29 H 1.09004 * 109.46913 * 120.00473 * 2 1 3 30 30 H 1.08996 * 109.47077 * 59.99749 * 4 3 2 31 31 H 1.09002 * 109.46747 * 299.99892 * 4 3 2 32 32 H 1.08996 * 109.47291 * 59.99745 * 5 4 3 33 33 H 1.09002 * 109.46942 * 299.99637 * 5 4 3 34 34 H 1.09002 * 109.88241 * 298.32048 * 9 8 6 35 35 H 1.09000 * 109.88049 * 59.33177 * 9 8 6 36 36 H 1.08999 * 109.47083 * 58.54334 * 12 10 9 37 37 H 1.09002 * 109.47293 * 178.54343 * 12 10 9 38 38 H 1.09000 * 109.47062 * 298.54438 * 12 10 9 39 39 H 0.96998 * 119.99743 * 341.23259 * 15 13 10 40 40 H 0.97003 * 119.99397 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.36956 * 323.01018 * 24 8 6 42 42 H 1.09001 * 110.36709 * 85.22211 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3277 3.0572 0.0012 7 8 6.0151 2.0581 0.0012 8 7 5.9074 4.2740 0.0022 9 6 7.3544 4.5337 0.0028 10 6 7.5487 6.0644 -0.0263 11 1 7.7032 6.4528 0.9804 12 6 8.7154 6.4448 -0.9400 13 6 6.2008 6.5722 -0.6099 14 1 6.2011 6.5119 -1.6982 15 7 5.9147 7.9374 -0.1619 16 6 5.0059 8.7045 -0.8406 17 1 4.5003 8.3031 -1.7065 18 6 4.7352 9.9981 -0.4164 19 7 3.8620 10.7355 -1.0692 20 14 5.6102 10.6924 1.0808 21 1 6.8661 11.3605 0.6546 22 1 4.7291 11.6790 1.7558 23 1 5.9310 9.5897 2.0222 24 6 5.1953 5.5649 0.0023 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8340 0.9764 -0.8891 31 1 3.8332 0.9766 0.8909 32 1 3.4223 3.4216 0.8911 33 1 3.4230 3.4221 -0.8889 34 1 7.8049 4.1200 0.9050 35 1 7.8119 4.0852 -0.8790 36 1 8.5243 6.0738 -1.9469 37 1 8.8179 7.5297 -0.9658 38 1 9.6353 6.0019 -0.5581 39 1 6.3691 8.2979 0.6156 40 1 3.6731 11.6397 -0.7729 41 1 4.2978 5.5032 -0.6131 42 1 4.9369 5.8554 1.0206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214311053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:35 Heat of formation + Delta-G solvation = -77.215864 kcal Electronic energy + Delta-G solvation = -20916.860611 eV Core-core repulsion = 17704.071210 eV Total energy + Delta-G solvation = -3212.789400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01736 -38.28647 -37.54612 -34.24395 -32.91437 -32.29653 -31.11103 -30.28180 -27.95014 -26.51298 -24.02227 -23.23510 -22.94437 -21.31048 -20.18083 -18.99660 -17.64232 -17.33254 -16.63573 -16.14859 -16.08392 -15.21806 -14.79415 -14.39222 -14.32629 -13.83072 -13.41149 -13.31141 -13.25768 -12.83211 -12.71293 -12.54465 -12.16818 -12.03280 -11.90743 -11.80722 -11.44946 -11.23401 -11.21412 -11.11656 -10.82829 -10.69551 -10.41331 -10.01773 -9.81999 -9.73085 -9.68074 -9.08734 -8.46012 -7.43317 -5.87898 -3.26278 2.71580 2.92846 3.30015 3.32739 3.39162 3.69118 4.48911 4.57873 4.81355 4.83285 4.92871 4.96188 4.99686 5.06442 5.11867 5.20396 5.36144 5.39527 5.48606 5.51123 5.63921 5.66376 5.67878 5.72640 5.74751 5.78517 5.81849 5.91454 6.06585 6.07510 6.24512 6.29416 6.39613 6.45726 6.70718 7.05227 7.66521 7.85855 8.23732 8.30708 9.06950 9.79059 9.96980 11.29669 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.004176 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.538790 B = 6703.630157 C = 7939.874640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.392 6.392 4 C 0.081 3.919 5 C -0.136 4.136 6 C 0.532 3.468 7 O -0.557 6.557 8 N -0.612 5.612 9 C 0.117 3.883 10 C -0.117 4.117 11 H 0.082 0.918 12 C -0.135 4.135 13 C 0.182 3.818 14 H 0.074 0.926 15 N -0.735 5.735 16 C -0.254 4.254 17 H 0.092 0.908 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.071 3.929 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -17.270 2.858 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.311 6.311 4 C 0.004 3.996 5 C -0.176 4.176 6 C 0.321 3.679 7 O -0.437 6.437 8 N -0.346 5.346 9 C -0.006 4.006 10 C -0.137 4.137 11 H 0.100 0.900 12 C -0.193 4.193 13 C 0.071 3.929 14 H 0.092 0.908 15 N -0.376 5.376 16 C -0.383 4.383 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.575 5.575 20 Si 0.713 3.287 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.054 4.054 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.245 -17.570 2.684 17.817 hybrid contribution 0.597 0.499 1.155 1.393 sum 1.842 -17.072 3.839 17.594 Atomic orbital electron populations 1.21750 0.93733 1.02125 1.03282 1.22434 0.95503 0.83727 1.00116 1.87833 1.21210 1.26552 1.95539 1.22095 0.80542 0.95534 1.01460 1.21434 0.92379 0.97752 1.06012 1.20025 0.89913 0.81829 0.76123 1.90673 1.65542 1.35898 1.51566 1.48495 1.07984 1.06065 1.72042 1.21948 0.81225 0.95754 1.01662 1.22564 0.97068 0.93335 1.00717 0.89953 1.21673 0.96373 1.02332 0.98909 1.21391 0.89650 0.84369 0.97532 0.90778 1.42640 1.50497 1.10282 1.34222 1.19053 1.15358 0.94502 1.09400 0.88974 1.24677 0.98755 0.96552 0.98622 1.69701 1.36470 1.09850 1.41455 0.86578 0.79478 0.78927 0.83668 1.20950 1.21634 1.20263 1.23492 0.97796 0.82064 1.02081 0.91798 0.91750 0.91199 0.93393 0.93444 0.92530 0.92622 0.88003 0.87834 0.91934 0.91430 0.92458 0.91538 0.93017 0.80223 0.92870 0.90521 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.56 6.66 37.16 0.25 0.81 16 3 O -0.39 -4.91 10.34 -35.23 -0.36 -5.27 16 4 C 0.08 1.00 5.23 37.16 0.19 1.20 16 5 C -0.14 -1.75 5.08 -27.88 -0.14 -1.89 16 6 C 0.53 8.16 7.85 -10.98 -0.09 8.07 16 7 O -0.56 -9.93 16.31 5.56 0.09 -9.84 16 8 N -0.61 -9.24 3.33 -170.50 -0.57 -9.81 16 9 C 0.12 1.64 6.46 -3.07 -0.02 1.62 16 10 C -0.12 -1.67 3.19 -88.65 -0.28 -1.95 16 11 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 12 C -0.14 -1.73 9.14 37.15 0.34 -1.39 16 13 C 0.18 3.17 3.14 -65.63 -0.21 2.96 16 14 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 15 N -0.73 -15.79 5.08 -51.20 -0.26 -16.05 16 16 C -0.25 -6.64 10.47 -15.06 -0.16 -6.80 16 17 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 18 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 19 N -0.93 -27.93 13.97 55.49 0.78 -27.16 16 20 Si 0.88 20.95 27.73 -169.99 -4.71 16.24 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 24 C 0.07 1.14 6.39 -2.51 -0.02 1.12 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.28 7.85 -51.93 -0.41 0.87 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 36 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.36 7.73 5.58 -40.82 -0.23 7.50 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 1.22 7.48 -51.93 -0.39 0.83 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -30.84 343.73 -7.05 -37.88 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.34 Total: 5.72 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 0.16 Total: 3.11 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.05 Total: -53.02 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.27 Total: -15.11 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.84 -7.05 -37.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214311053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.334 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds