Wall clock time and date at job start Mon Mar 30 2020 01:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42890 * 109.47438 * 2 1 4 4 C 1.42898 * 114.00555 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47459 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47067 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99990 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00100 * 180.02562 * 6 5 4 9 9 C 1.47018 * 125.64981 * 179.97438 * 8 6 5 10 10 C 1.54325 * 107.40412 * 178.82520 * 9 8 6 11 11 H 1.09000 * 110.72188 * 96.24097 * 10 9 8 12 12 C 1.52995 * 110.72304 * 219.52316 * 10 9 8 13 13 C 1.55405 * 102.82616 * 337.97548 * 10 9 8 14 14 H 1.09000 * 110.89538 * 277.26533 * 13 10 9 15 15 N 1.46505 * 111.03913 * 153.47072 * 13 10 9 16 16 C 1.36935 * 120.00217 * 161.23025 * 15 13 10 17 17 H 1.08006 * 119.99642 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00007 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99572 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00139 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47224 * 90.00046 * 20 18 16 22 22 H 1.48503 * 109.47388 * 210.00158 * 20 18 16 23 23 H 1.48501 * 109.47319 * 330.00053 * 20 18 16 24 24 C 1.47426 * 125.64500 * 359.95253 * 8 6 5 25 25 H 1.08995 * 109.47373 * 300.00095 * 1 2 3 26 26 H 1.09003 * 109.46982 * 60.00307 * 1 2 3 27 27 H 1.09008 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47141 * 239.99424 * 2 1 3 29 29 H 1.09004 * 109.46913 * 120.00473 * 2 1 3 30 30 H 1.08996 * 109.47077 * 59.99749 * 4 3 2 31 31 H 1.09002 * 109.46747 * 299.99892 * 4 3 2 32 32 H 1.08996 * 109.47291 * 59.99745 * 5 4 3 33 33 H 1.09002 * 109.46942 * 299.99637 * 5 4 3 34 34 H 1.09002 * 109.88241 * 298.32048 * 9 8 6 35 35 H 1.09000 * 109.88049 * 59.33177 * 9 8 6 36 36 H 1.08999 * 109.47083 * 58.54334 * 12 10 9 37 37 H 1.09002 * 109.47293 * 178.54343 * 12 10 9 38 38 H 1.09000 * 109.47062 * 298.54438 * 12 10 9 39 39 H 0.96998 * 119.99743 * 341.23259 * 15 13 10 40 40 H 0.97003 * 119.99397 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.36956 * 323.01018 * 24 8 6 42 42 H 1.09001 * 110.36709 * 85.22211 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3277 3.0572 0.0012 7 8 6.0151 2.0581 0.0012 8 7 5.9074 4.2740 0.0022 9 6 7.3544 4.5337 0.0028 10 6 7.5487 6.0644 -0.0263 11 1 7.7032 6.4528 0.9804 12 6 8.7154 6.4448 -0.9400 13 6 6.2008 6.5722 -0.6099 14 1 6.2011 6.5119 -1.6982 15 7 5.9147 7.9374 -0.1619 16 6 5.0059 8.7045 -0.8406 17 1 4.5003 8.3031 -1.7065 18 6 4.7352 9.9981 -0.4164 19 7 3.8620 10.7355 -1.0692 20 14 5.6102 10.6924 1.0808 21 1 6.8661 11.3605 0.6546 22 1 4.7291 11.6790 1.7558 23 1 5.9310 9.5897 2.0222 24 6 5.1953 5.5649 0.0023 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8340 0.9764 -0.8891 31 1 3.8332 0.9766 0.8909 32 1 3.4223 3.4216 0.8911 33 1 3.4230 3.4221 -0.8889 34 1 7.8049 4.1200 0.9050 35 1 7.8119 4.0852 -0.8790 36 1 8.5243 6.0738 -1.9469 37 1 8.8179 7.5297 -0.9658 38 1 9.6353 6.0019 -0.5581 39 1 6.3691 8.2979 0.6156 40 1 3.6731 11.6397 -0.7729 41 1 4.2978 5.5032 -0.6131 42 1 4.9369 5.8554 1.0206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214311053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:34 Heat of formation + Delta-G solvation = -97.602070 kcal Electronic energy + Delta-G solvation = -20917.744623 eV Core-core repulsion = 17704.071210 eV Total energy + Delta-G solvation = -3213.673413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26118 -39.36937 -38.69812 -35.96994 -34.16409 -33.41156 -32.81778 -31.16936 -29.46451 -27.59877 -25.69160 -24.40837 -23.68637 -22.75758 -21.55291 -20.21173 -19.50085 -18.45377 -17.71901 -17.26108 -17.23998 -16.37165 -16.31560 -15.85703 -15.36263 -14.96130 -14.83145 -14.72487 -14.54541 -14.32397 -13.93076 -13.51640 -13.24459 -13.15821 -13.03712 -12.95333 -12.92455 -12.71894 -12.26606 -12.09064 -12.06271 -12.01012 -11.92107 -11.78980 -11.37851 -11.11216 -10.93932 -10.61589 -9.75062 -9.32668 -7.99875 -5.35471 1.42205 1.44956 1.49519 1.52075 1.79813 2.51120 2.71424 3.29645 3.35405 3.64194 3.73515 3.86114 3.96370 4.01576 4.06605 4.16690 4.33907 4.36131 4.38212 4.42829 4.49148 4.56248 4.67072 4.72649 4.74694 4.86537 4.89269 4.91620 5.03382 5.08501 5.09253 5.18157 5.27455 5.31583 5.45052 5.79581 6.18903 6.23324 6.42484 7.01233 7.08984 7.82127 8.01508 9.21000 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.004176 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.538790 B = 6703.630157 C = 7939.874640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.086 3.914 5 C -0.132 4.132 6 C 0.532 3.468 7 O -0.582 6.582 8 N -0.612 5.612 9 C 0.117 3.883 10 C -0.104 4.104 11 H 0.090 0.910 12 C -0.133 4.133 13 C 0.173 3.827 14 H 0.063 0.937 15 N -0.735 5.735 16 C -0.231 4.231 17 H 0.061 0.939 18 C -0.059 4.059 19 N -0.982 5.982 20 Si 0.951 3.049 21 H -0.279 1.279 22 H -0.301 1.301 23 H -0.248 1.248 24 C 0.082 3.918 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.369 0.631 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -18.628 4.224 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.329 6.329 4 C 0.009 3.991 5 C -0.171 4.171 6 C 0.323 3.677 7 O -0.463 6.463 8 N -0.345 5.345 9 C -0.006 4.006 10 C -0.124 4.124 11 H 0.109 0.891 12 C -0.190 4.190 13 C 0.063 3.937 14 H 0.081 0.919 15 N -0.378 5.378 16 C -0.362 4.362 17 H 0.079 0.921 18 C -0.250 4.250 19 N -0.632 5.632 20 Si 0.778 3.222 21 H -0.206 1.206 22 H -0.228 1.228 23 H -0.172 1.172 24 C -0.043 4.043 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.203 0.797 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.451 -18.991 4.060 19.575 hybrid contribution 0.217 0.798 0.643 1.047 sum 2.668 -18.193 4.703 18.980 Atomic orbital electron populations 1.21774 0.92604 1.03499 1.02767 1.22692 0.96478 0.82576 1.00976 1.87811 1.20989 1.28471 1.95642 1.21996 0.80792 0.95032 1.01286 1.21422 0.90717 0.98428 1.06571 1.20359 0.90707 0.81343 0.75340 1.90662 1.66308 1.36542 1.52768 1.48504 1.08467 1.05675 1.71847 1.22029 0.80643 0.95429 1.02461 1.22496 0.95514 0.93222 1.01142 0.89135 1.21665 0.96881 1.01714 0.98778 1.21542 0.92215 0.82777 0.97199 0.91904 1.42539 1.49660 1.11521 1.34040 1.18992 1.14605 0.94582 1.08022 0.92103 1.25456 1.00193 0.97222 1.02175 1.69882 1.39154 1.10210 1.43906 0.85478 0.77873 0.78519 0.80292 1.20563 1.22794 1.17207 1.23197 0.97211 0.82112 1.01814 0.92228 0.92316 0.88910 0.92602 0.92507 0.92819 0.92686 0.87179 0.87397 0.90839 0.90960 0.92458 0.92693 0.90436 0.79658 0.93384 0.90761 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.05 0.87 6.66 71.98 0.48 1.35 16 3 O -0.41 -9.83 10.34 -148.98 -1.54 -11.37 16 4 C 0.09 2.05 5.23 71.98 0.38 2.42 16 5 C -0.13 -3.23 5.08 29.85 0.15 -3.08 16 6 C 0.53 15.53 7.85 87.66 0.69 16.22 16 7 O -0.58 -19.90 16.31 -3.03 -0.05 -19.95 16 8 N -0.61 -17.36 3.33 -811.74 -2.70 -20.06 16 9 C 0.12 2.98 6.46 86.73 0.56 3.54 16 10 C -0.10 -2.70 3.19 -9.52 -0.03 -2.73 16 11 H 0.09 2.26 8.00 -2.39 -0.02 2.24 16 12 C -0.13 -3.06 9.14 71.98 0.66 -2.40 16 13 C 0.17 5.77 3.14 46.48 0.15 5.92 16 14 H 0.06 2.26 8.03 -2.39 -0.02 2.24 16 15 N -0.74 -30.62 5.08 -315.91 -1.61 -32.23 16 16 C -0.23 -12.17 10.47 84.03 0.88 -11.29 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 18 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 19 N -0.98 -60.58 13.97 21.65 0.30 -60.28 16 20 Si 0.95 42.87 27.73 68.60 1.90 44.78 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 23 H -0.25 -9.85 6.52 99.48 0.65 -9.20 16 24 C 0.08 2.51 6.39 86.86 0.56 3.06 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.88 16 30 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 31 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.11 2.56 7.85 -2.39 -0.02 2.54 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.80 7.82 -2.39 -0.02 1.79 16 36 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.37 14.72 5.58 -92.71 -0.52 14.21 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.07 2.30 7.48 -2.39 -0.02 2.28 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -66.17 343.73 2.38 -63.79 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.41 Total: 26.55 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.67 Total: 8.77 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.00 Total: -112.56 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.59 Total: -31.32 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.90 Total: 44.78 kcal Total: -66.17 2.38 -63.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214311053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.814 kcal (2) G-P(sol) polarization free energy of solvation -66.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds