Wall clock time and date at job start Mon Mar 30 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42901 * 109.47171 * 2 1 4 4 C 1.42895 * 113.99696 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47069 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99544 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00257 * 179.97438 * 5 4 3 8 8 C 1.46510 * 119.99925 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46680 * 35.00162 * 8 7 5 10 10 C 1.52997 * 109.47071 * 274.99865 * 8 7 5 11 11 C 1.52999 * 109.46991 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46626 * 60.00378 * 11 10 8 13 13 C 1.52997 * 109.47127 * 299.99539 * 12 11 10 14 14 C 1.52996 * 109.46858 * 155.00046 * 8 7 5 15 15 H 1.08996 * 109.47452 * 59.99781 * 14 8 7 16 16 N 1.46507 * 109.47258 * 299.99700 * 14 8 7 17 17 C 1.36933 * 120.00173 * 154.99816 * 16 14 8 18 18 H 1.08000 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00419 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00263 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47442 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47322 * 120.00159 * 21 19 17 24 24 H 1.48500 * 109.47257 * 240.00174 * 21 19 17 25 25 H 1.08996 * 109.46639 * 60.00470 * 1 2 3 26 26 H 1.09000 * 109.46649 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46774 * 300.00218 * 1 2 3 28 28 H 1.08998 * 109.47296 * 239.99728 * 2 1 3 29 29 H 1.09002 * 109.46563 * 119.99969 * 2 1 3 30 30 H 1.08993 * 109.47715 * 59.99733 * 4 3 2 31 31 H 1.09000 * 109.47387 * 299.99168 * 4 3 2 32 32 H 0.96994 * 120.00306 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47153 * 60.00215 * 10 8 7 34 34 H 1.08993 * 109.47194 * 300.00503 * 10 8 7 35 35 H 1.08993 * 109.47839 * 300.00447 * 11 10 8 36 36 H 1.09000 * 109.47160 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 38 38 H 1.09001 * 109.46998 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 40 40 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 41 41 H 0.96998 * 120.00008 * 335.00854 * 16 14 8 42 42 H 0.97001 * 120.00197 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9161 -0.0012 6 8 2.9611 3.7728 -0.0016 7 7 5.1210 3.2662 -0.0013 8 6 5.4988 4.6817 -0.0024 9 1 4.7790 5.2503 0.5865 10 6 5.5091 5.2057 -1.4398 11 6 5.9030 6.6841 -1.4409 12 6 7.2975 6.8407 -0.8310 13 6 7.2872 6.3168 0.6064 14 6 6.8933 4.8378 0.6073 15 1 7.6131 4.2692 0.0185 16 7 6.8835 4.3362 1.9838 17 6 8.0440 3.8915 2.5588 18 1 8.9666 3.9110 1.9977 19 6 8.0346 3.4157 3.8627 20 7 6.9102 3.3914 4.5463 21 14 9.6178 2.8097 4.6473 22 1 10.7336 2.9417 3.6763 23 1 9.9144 3.6219 5.8547 24 1 9.4643 1.3845 5.0349 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8334 0.9766 -0.8907 31 1 3.8341 0.9765 0.8892 32 1 5.8076 2.5810 -0.0006 33 1 4.5156 5.0944 -1.8742 34 1 6.2288 4.6370 -2.0286 35 1 5.1830 7.2524 -0.8522 36 1 5.9099 7.0575 -2.4649 37 1 8.0174 6.2723 -1.4198 38 1 7.5783 7.8939 -0.8322 39 1 8.2805 6.4288 1.0411 40 1 6.5671 6.8851 1.1951 41 1 6.0549 4.3189 2.4878 42 1 6.9036 3.0593 5.4576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224604432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:55 Heat of formation + Delta-G solvation = -91.712172 kcal Electronic energy + Delta-G solvation = -21467.679587 eV Core-core repulsion = 18254.261580 eV Total energy + Delta-G solvation = -3213.418007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74059 -38.22222 -37.14973 -34.04815 -33.68138 -31.58249 -31.15264 -29.61882 -28.05729 -26.68553 -23.73249 -22.85084 -22.14318 -21.06768 -20.10372 -19.46180 -17.33041 -16.88964 -16.62488 -16.34002 -15.59008 -14.97951 -14.63734 -14.28349 -13.97527 -13.75794 -13.54829 -13.02444 -12.95668 -12.81960 -12.62583 -12.44193 -12.09973 -12.05905 -11.42784 -11.28167 -11.09056 -10.94686 -10.82555 -10.75218 -10.55683 -10.31734 -10.15156 -9.75639 -9.68502 -9.64661 -9.37848 -8.93866 -8.55546 -7.00685 -5.80266 -3.10160 2.97346 3.09301 3.39065 3.45090 3.47438 4.14184 4.53431 4.93988 4.95329 5.07598 5.10857 5.18590 5.22741 5.27582 5.33667 5.37951 5.51543 5.53755 5.56699 5.72501 5.81759 5.83255 5.90131 5.96582 5.98998 6.02530 6.12605 6.33817 6.46382 6.49265 6.51991 6.58997 6.86324 6.90387 7.03391 7.14415 7.65778 7.93998 8.36928 8.62754 9.48706 10.05442 10.40710 11.41766 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.005908 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.176216 B = 4738.454546 C = 6675.888405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.515 3.485 6 O -0.531 6.531 7 N -0.707 5.707 8 C 0.143 3.857 9 H 0.084 0.916 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.133 4.133 14 C 0.173 3.827 15 H 0.051 0.949 16 N -0.722 5.722 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.403 0.597 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -3.358 -12.834 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.300 3.700 6 O -0.407 6.407 7 N -0.358 5.358 8 C 0.038 3.962 9 H 0.102 0.898 10 C -0.163 4.163 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.174 4.174 14 C 0.063 3.937 15 H 0.069 0.931 16 N -0.363 5.363 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.237 0.763 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.759 -2.662 -12.764 14.254 hybrid contribution 1.196 -0.958 0.809 1.732 sum -4.563 -3.620 -11.955 13.299 Atomic orbital electron populations 1.21722 0.93615 1.02005 1.03391 1.22524 0.95811 0.83735 1.00128 1.88008 1.18877 1.25981 1.95432 1.22209 0.83502 0.95333 1.02535 1.20105 0.82996 0.90208 0.76660 1.90690 1.49488 1.51710 1.48821 1.45776 1.06498 1.09023 1.74502 1.21297 0.98294 0.80823 0.95825 0.89785 1.21873 1.01393 0.96214 0.96836 1.21473 0.97475 0.95944 1.00303 1.21582 0.96453 1.00313 0.97393 1.22226 1.02223 0.98276 0.94682 1.20475 0.92341 0.93098 0.87809 0.93135 1.42440 1.09400 1.75067 1.09409 1.19252 0.88078 1.34043 0.95767 0.91130 1.24737 0.96808 1.02174 0.97019 1.69685 1.24760 1.52453 1.10835 0.86164 0.82852 0.78122 0.79295 1.20586 1.21908 1.21956 0.91844 0.91164 0.91646 0.93431 0.93124 0.90732 0.89943 0.76276 0.91921 0.92043 0.91946 0.92390 0.92399 0.92685 0.91604 0.92432 0.78111 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.61 6.66 37.16 0.25 0.86 16 3 O -0.36 -5.65 9.88 -55.14 -0.54 -6.19 16 4 C 0.04 0.62 6.42 36.01 0.23 0.85 16 5 C 0.52 9.03 7.87 -10.99 -0.09 8.95 16 6 O -0.53 -11.39 16.16 -14.36 -0.23 -11.62 16 7 N -0.71 -11.57 4.91 -53.80 -0.26 -11.84 16 8 C 0.14 2.45 1.98 -67.93 -0.13 2.31 16 9 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 10 C -0.12 -1.79 5.49 -26.73 -0.15 -1.93 16 11 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 12 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 13 C -0.13 -2.30 5.50 -26.71 -0.15 -2.45 16 14 C 0.17 3.25 2.30 -67.90 -0.16 3.09 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.72 -17.19 4.95 -53.40 -0.26 -17.45 16 17 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 21 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 6.03 8.60 -40.82 -0.35 5.68 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -32.07 343.93 -8.16 -40.23 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -7.37 Total: 11.50 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -0.37 Total: 0.27 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.20 Total: -56.11 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.78 Total: -17.82 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.07 -8.16 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224604432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.482 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds