Wall clock time and date at job start Mon Mar 30 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42901 * 109.47171 * 2 1 4 4 C 1.42895 * 113.99696 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47069 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99544 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00257 * 179.97438 * 5 4 3 8 8 C 1.46510 * 119.99925 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46680 * 35.00162 * 8 7 5 10 10 C 1.52997 * 109.47071 * 274.99865 * 8 7 5 11 11 C 1.52999 * 109.46991 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46626 * 60.00378 * 11 10 8 13 13 C 1.52997 * 109.47127 * 299.99539 * 12 11 10 14 14 C 1.52996 * 109.46858 * 155.00046 * 8 7 5 15 15 H 1.08996 * 109.47452 * 59.99781 * 14 8 7 16 16 N 1.46507 * 109.47258 * 299.99700 * 14 8 7 17 17 C 1.36933 * 120.00173 * 154.99816 * 16 14 8 18 18 H 1.08000 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00419 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00263 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47442 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47322 * 120.00159 * 21 19 17 24 24 H 1.48500 * 109.47257 * 240.00174 * 21 19 17 25 25 H 1.08996 * 109.46639 * 60.00470 * 1 2 3 26 26 H 1.09000 * 109.46649 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46774 * 300.00218 * 1 2 3 28 28 H 1.08998 * 109.47296 * 239.99728 * 2 1 3 29 29 H 1.09002 * 109.46563 * 119.99969 * 2 1 3 30 30 H 1.08993 * 109.47715 * 59.99733 * 4 3 2 31 31 H 1.09000 * 109.47387 * 299.99168 * 4 3 2 32 32 H 0.96994 * 120.00306 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47153 * 60.00215 * 10 8 7 34 34 H 1.08993 * 109.47194 * 300.00503 * 10 8 7 35 35 H 1.08993 * 109.47839 * 300.00447 * 11 10 8 36 36 H 1.09000 * 109.47160 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 38 38 H 1.09001 * 109.46998 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 40 40 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 41 41 H 0.96998 * 120.00008 * 335.00854 * 16 14 8 42 42 H 0.97001 * 120.00197 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9161 -0.0012 6 8 2.9611 3.7728 -0.0016 7 7 5.1210 3.2662 -0.0013 8 6 5.4988 4.6817 -0.0024 9 1 4.7790 5.2503 0.5865 10 6 5.5091 5.2057 -1.4398 11 6 5.9030 6.6841 -1.4409 12 6 7.2975 6.8407 -0.8310 13 6 7.2872 6.3168 0.6064 14 6 6.8933 4.8378 0.6073 15 1 7.6131 4.2692 0.0185 16 7 6.8835 4.3362 1.9838 17 6 8.0440 3.8915 2.5588 18 1 8.9666 3.9110 1.9977 19 6 8.0346 3.4157 3.8627 20 7 6.9102 3.3914 4.5463 21 14 9.6178 2.8097 4.6473 22 1 10.7336 2.9417 3.6763 23 1 9.9144 3.6219 5.8547 24 1 9.4643 1.3845 5.0349 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8334 0.9766 -0.8907 31 1 3.8341 0.9765 0.8892 32 1 5.8076 2.5810 -0.0006 33 1 4.5156 5.0944 -1.8742 34 1 6.2288 4.6370 -2.0286 35 1 5.1830 7.2524 -0.8522 36 1 5.9099 7.0575 -2.4649 37 1 8.0174 6.2723 -1.4198 38 1 7.5783 7.8939 -0.8322 39 1 8.2805 6.4288 1.0411 40 1 6.5671 6.8851 1.1951 41 1 6.0549 4.3189 2.4878 42 1 6.9036 3.0593 5.4576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224604432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:55 Heat of formation + Delta-G solvation = -113.505665 kcal Electronic energy + Delta-G solvation = -21468.624624 eV Core-core repulsion = 18254.261580 eV Total energy + Delta-G solvation = -3214.363044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11754 -39.48410 -38.37829 -35.81496 -35.10877 -32.99858 -32.47474 -30.87911 -29.61253 -27.94646 -25.61777 -23.70886 -23.44756 -22.50108 -21.49464 -20.79085 -19.18970 -18.13268 -17.97770 -17.37492 -16.94140 -16.61006 -15.86214 -15.81886 -15.38415 -15.25091 -14.81187 -14.61934 -14.15622 -14.09874 -13.84256 -13.55443 -13.50518 -13.22118 -12.91297 -12.84492 -12.33129 -12.20868 -12.18866 -12.14580 -12.00591 -12.00078 -11.63865 -11.43344 -11.11961 -10.98935 -10.69861 -10.66443 -9.95496 -8.99582 -7.90986 -5.20248 1.48630 1.50136 1.59265 1.61369 1.91182 2.57464 3.05827 3.42847 3.67870 3.76858 3.86375 4.12856 4.15504 4.18609 4.27026 4.29167 4.34688 4.35703 4.44873 4.49620 4.51290 4.60088 4.70500 4.82465 4.95983 5.02188 5.02582 5.17079 5.24958 5.25845 5.30591 5.31705 5.47157 5.53881 5.57473 5.68371 6.11419 6.28917 6.62295 7.28263 7.35523 8.09127 8.33459 9.32508 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.005908 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.176216 B = 4738.454546 C = 6675.888405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.400 6.400 4 C 0.050 3.950 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.700 5.700 8 C 0.148 3.852 9 H 0.048 0.952 10 C -0.114 4.114 11 C -0.111 4.111 12 C -0.109 4.109 13 C -0.129 4.129 14 C 0.173 3.827 15 H 0.063 0.937 16 N -0.733 5.733 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.075 4.075 20 N -0.972 5.972 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.301 1.301 24 H -0.296 1.296 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.411 0.589 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.368 0.632 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -4.159 -15.074 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.320 6.320 4 C -0.030 4.030 5 C 0.295 3.705 6 O -0.458 6.458 7 N -0.352 5.352 8 C 0.043 3.957 9 H 0.066 0.934 10 C -0.153 4.153 11 C -0.149 4.149 12 C -0.147 4.147 13 C -0.170 4.170 14 C 0.065 3.935 15 H 0.081 0.919 16 N -0.372 5.372 17 C -0.361 4.361 18 H 0.099 0.901 19 C -0.267 4.267 20 N -0.623 5.623 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.229 1.229 24 H -0.223 1.223 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.247 0.753 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.199 0.801 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.326 -3.466 -15.065 16.052 hybrid contribution 0.737 -0.684 1.456 1.770 sum -3.589 -4.150 -13.609 14.673 Atomic orbital electron populations 1.21771 0.92925 1.03561 1.02427 1.22811 0.96476 0.82069 1.01606 1.87971 1.19498 1.28776 1.95750 1.22239 0.83449 0.92665 1.04632 1.20835 0.82629 0.91613 0.75467 1.90661 1.50689 1.53368 1.51108 1.45762 1.06651 1.08959 1.73785 1.21169 0.96117 0.81167 0.97265 0.93360 1.21804 1.01676 0.97351 0.94502 1.21484 0.96754 0.94846 1.01842 1.21513 0.97193 1.01480 0.94514 1.22107 1.00600 0.96944 0.97327 1.20684 0.93575 0.93898 0.85389 0.91916 1.42622 1.08007 1.75352 1.11203 1.19640 0.88994 1.31781 0.95673 0.90076 1.25490 0.99538 1.03682 0.97945 1.69854 1.26963 1.54667 1.10816 0.85139 0.79943 0.76912 0.78144 1.18682 1.22927 1.22302 0.92301 0.88316 0.93122 0.91048 0.92400 0.86857 0.89221 0.75275 0.92698 0.89876 0.93108 0.89385 0.90706 0.90902 0.93022 0.94318 0.80118 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 10.28 71.99 0.74 -2.01 16 2 C 0.05 0.96 6.66 71.99 0.48 1.44 16 3 O -0.40 -12.23 9.88 -129.94 -1.28 -13.51 16 4 C 0.05 1.34 6.42 71.24 0.46 1.79 16 5 C 0.51 17.90 7.87 87.66 0.69 18.59 16 6 O -0.58 -25.65 16.16 15.98 0.26 -25.39 16 7 N -0.70 -22.71 4.91 -442.52 -2.17 -24.88 16 8 C 0.15 5.07 1.98 44.99 0.09 5.16 16 9 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 10 C -0.11 -3.08 5.49 30.59 0.17 -2.91 16 11 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 12 C -0.11 -2.67 5.92 30.60 0.18 -2.49 16 13 C -0.13 -4.37 5.50 30.61 0.17 -4.20 16 14 C 0.17 6.37 2.30 45.00 0.10 6.48 16 15 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 16 N -0.73 -35.23 4.95 -322.87 -1.60 -36.83 16 17 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 18 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 20 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 21 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.41 11.85 8.60 -92.71 -0.80 11.05 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.37 20.11 7.80 -92.71 -0.72 19.39 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -71.33 343.93 1.55 -69.78 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.52 Total: 38.13 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 4.56 Total: 4.55 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -3.49 Total: -120.45 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.02 Total: -38.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.33 1.55 -69.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224604432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.721 kcal (2) G-P(sol) polarization free energy of solvation -71.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds