Wall clock time and date at job start Mon Mar 30 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47455 * 2 1 4 4 C 1.42888 * 114.00323 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47212 * 29.99793 * 4 3 2 6 6 C 1.53004 * 109.47127 * 270.00130 * 4 3 2 7 7 C 1.50699 * 109.47322 * 150.00108 * 4 3 2 8 8 O 1.21280 * 119.99735 * 4.99924 * 7 4 3 9 9 N 1.34778 * 120.00033 * 185.00025 * 7 4 3 10 10 C 1.46493 * 120.00285 * 5.68685 * 9 7 4 11 11 C 1.46501 * 120.00075 * 185.68689 * 9 7 4 12 12 C 1.53000 * 109.47088 * 275.40091 * 11 9 7 13 13 H 1.09005 * 112.96712 * 71.10335 * 12 11 9 14 14 C 1.53940 * 113.76885 * 299.42290 * 12 11 9 15 15 C 1.53941 * 86.29344 * 221.97873 * 14 12 11 16 16 N 1.47575 * 113.77021 * 202.77750 * 12 11 9 17 17 C 1.36939 * 134.49541 * 319.05782 * 16 12 11 18 18 H 1.08001 * 120.00096 * 31.20763 * 17 16 12 19 19 C 1.38818 * 120.00050 * 211.20171 * 17 16 12 20 20 N 1.31618 * 119.99503 * 187.50972 * 19 17 16 21 21 Si 1.86795 * 119.99792 * 7.51544 * 19 17 16 22 22 H 1.48500 * 109.47293 * 84.01709 * 21 19 17 23 23 H 1.48504 * 109.46837 * 204.01452 * 21 19 17 24 24 H 1.48501 * 109.47363 * 324.01704 * 21 19 17 25 25 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46834 * 299.99443 * 1 2 3 27 27 H 1.09000 * 109.47028 * 59.99772 * 1 2 3 28 28 H 1.09001 * 109.46970 * 239.99692 * 2 1 3 29 29 H 1.09000 * 109.47028 * 120.00228 * 2 1 3 30 30 H 1.09000 * 109.46799 * 299.99916 * 6 4 3 31 31 H 1.08997 * 109.47213 * 60.00306 * 6 4 3 32 32 H 1.09004 * 109.47095 * 180.02562 * 6 4 3 33 33 H 1.09000 * 109.47108 * 270.00141 * 10 9 7 34 34 H 1.09002 * 109.47308 * 29.99808 * 10 9 7 35 35 H 1.08998 * 109.47572 * 150.00245 * 10 9 7 36 36 H 1.08996 * 109.47330 * 155.39866 * 11 9 7 37 37 H 1.09005 * 109.46715 * 35.39692 * 11 9 7 38 38 H 1.08994 * 113.74306 * 336.32614 * 14 12 11 39 39 H 1.09006 * 113.73990 * 107.52825 * 14 12 11 40 40 H 1.08993 * 113.77438 * 137.90749 * 15 14 12 41 41 H 1.08997 * 113.77439 * 269.19970 * 15 14 12 42 42 H 0.97002 * 119.99258 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.9399 1.5001 1.4417 7 6 3.8342 2.7264 -0.7109 8 8 2.9856 3.5049 -1.0914 9 7 5.1380 2.9939 -0.9234 10 6 6.1558 1.9989 -0.5770 11 6 5.5373 4.2797 -1.5008 12 6 5.4463 4.2040 -3.0263 13 1 4.4193 4.1720 -3.3900 14 6 6.3591 3.1327 -3.6499 15 6 6.6842 4.1810 -4.7293 16 7 6.2933 5.1919 -3.7224 17 6 6.5954 6.5116 -3.5167 18 1 6.6216 6.9095 -2.5130 19 6 6.8682 7.3380 -4.5982 20 7 7.3018 8.5642 -4.3964 21 14 6.6198 6.7097 -6.3397 22 1 5.1960 6.8757 -6.7275 23 1 7.4800 7.4820 -7.2719 24 1 6.9860 5.2720 -6.4042 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5076 2.3585 1.9558 31 1 3.6483 0.5841 1.9555 32 1 5.0265 1.5866 1.4413 33 1 6.4796 2.1536 0.4523 34 1 5.7355 0.9984 -0.6791 35 1 7.0097 2.1044 -1.2462 36 1 6.5627 4.5064 -1.2088 37 1 4.8738 5.0637 -1.1357 38 1 7.2122 2.8660 -3.0262 39 1 5.8208 2.2635 -4.0279 40 1 7.7386 4.2179 -5.0025 41 1 6.0220 4.1411 -5.5941 42 1 7.4921 9.1418 -5.1522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230848158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:36 Heat of formation + Delta-G solvation = -9.651966 kcal Electronic energy + Delta-G solvation = -21644.453968 eV Core-core repulsion = 18434.594359 eV Total energy + Delta-G solvation = -3209.859610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16581 -38.42412 -37.53360 -35.27289 -32.66270 -32.17195 -30.46336 -28.59658 -28.30164 -26.60226 -24.52094 -23.17844 -22.94691 -22.36378 -19.66093 -18.97050 -17.34992 -16.93585 -16.55777 -16.07158 -15.65193 -15.36701 -15.21236 -14.30784 -14.20653 -13.76887 -13.41404 -13.14304 -12.89081 -12.76254 -12.69562 -12.59548 -12.36407 -12.22029 -12.00280 -11.85813 -11.58100 -11.42264 -11.25583 -10.98213 -10.77605 -10.21208 -10.13568 -9.99214 -9.71257 -9.34582 -9.24451 -8.67882 -8.31095 -6.91776 -5.90416 -3.34684 2.75132 2.80355 3.40569 3.47587 3.50101 3.70426 4.44275 4.58543 4.62202 4.74660 4.82646 4.89009 4.98453 5.07419 5.10538 5.21163 5.30813 5.31744 5.39107 5.45200 5.48272 5.60469 5.68154 5.73029 5.86647 5.90777 5.92970 6.00196 6.17797 6.29857 6.44622 6.50186 6.60742 6.64781 6.95357 7.10633 7.50091 7.55783 8.34492 8.40335 8.74092 9.67417 10.40768 11.26238 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.004219 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.906652 B = 6635.541513 C = 6823.718792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.083 0.917 6 C -0.174 4.174 7 C 0.510 3.490 8 O -0.513 6.513 9 N -0.607 5.607 10 C 0.074 3.926 11 C 0.123 3.877 12 C 0.126 3.874 13 H 0.053 0.947 14 C -0.149 4.149 15 C 0.113 3.887 16 N -0.616 5.616 17 C -0.233 4.233 18 H 0.091 0.909 19 C 0.026 3.974 20 N -0.918 5.918 21 Si 0.863 3.137 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.241 1.241 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 -21.714 10.310 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.011 3.989 5 H 0.100 0.900 6 C -0.232 4.232 7 C 0.295 3.705 8 O -0.387 6.387 9 N -0.343 5.343 10 C -0.069 4.069 11 C 0.001 3.999 12 C 0.019 3.981 13 H 0.071 0.929 14 C -0.187 4.187 15 C -0.012 4.012 16 N -0.345 5.345 17 C -0.360 4.360 18 H 0.108 0.892 19 C -0.173 4.173 20 N -0.562 5.562 21 Si 0.692 3.308 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.166 1.166 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.454 -20.725 10.059 23.674 hybrid contribution 0.035 -0.316 -1.099 1.144 sum -5.420 -21.041 8.960 23.503 Atomic orbital electron populations 1.21727 0.93495 1.02077 1.03514 1.22571 0.95965 0.83752 0.99892 1.88071 1.18585 1.26041 1.94920 1.21893 0.83451 0.96839 0.96682 0.89950 1.22312 1.02322 1.03481 0.95043 1.20311 0.82547 0.87751 0.79852 1.90746 1.49580 1.48819 1.49511 1.47764 1.05405 1.18126 1.62969 1.21979 0.92603 0.91438 1.00909 1.21668 1.00986 0.83064 0.94227 1.22608 0.94778 0.88853 0.91879 0.92932 1.23635 0.99497 0.96229 0.99328 1.22921 0.98485 0.87270 0.92487 1.46479 1.49817 1.07506 1.30688 1.18653 1.41908 0.81330 0.94120 0.89179 1.25322 0.99267 0.94525 0.98198 1.69744 1.48501 1.07012 1.30933 0.87252 0.78075 0.80279 0.85180 1.21281 1.22591 1.16617 0.91134 0.91773 0.91570 0.93332 0.93368 0.91120 0.91529 0.90380 0.92446 0.91596 0.90201 0.89599 0.90452 0.90498 0.92926 0.92920 0.94218 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.50 6.47 37.16 0.24 0.74 16 3 O -0.36 -4.81 9.52 -55.09 -0.52 -5.33 16 4 C 0.07 0.84 2.34 -27.88 -0.07 0.78 16 5 H 0.08 0.73 6.61 -51.93 -0.34 0.39 16 6 C -0.17 -1.55 9.35 37.16 0.35 -1.20 16 7 C 0.51 8.06 7.01 -10.99 -0.08 7.98 16 8 O -0.51 -10.77 16.24 -14.30 -0.23 -11.00 16 9 N -0.61 -8.61 2.71 -181.58 -0.49 -9.11 16 10 C 0.07 0.69 8.70 59.84 0.52 1.21 16 11 C 0.12 2.22 5.26 -4.04 -0.02 2.20 16 12 C 0.13 2.57 4.57 -66.87 -0.31 2.26 16 13 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.15 -2.54 7.19 -25.80 -0.19 -2.72 16 15 C 0.11 2.39 5.57 -2.78 -0.02 2.37 16 16 N -0.62 -15.04 3.17 -169.64 -0.54 -15.58 16 17 C -0.23 -6.70 10.95 -15.06 -0.16 -6.86 16 18 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 19 C 0.03 0.78 5.50 -17.43 -0.10 0.68 16 20 N -0.92 -28.96 13.97 55.49 0.78 -28.18 16 21 Si 0.86 22.26 26.85 -169.99 -4.56 17.69 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 24 H -0.24 -5.61 3.90 56.52 0.22 -5.39 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.05 0.35 7.87 -51.93 -0.41 -0.06 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.08 0.57 5.41 -51.93 -0.28 0.29 16 33 H 0.06 0.44 6.88 -51.93 -0.36 0.08 16 34 H 0.07 0.46 6.34 -51.93 -0.33 0.13 16 35 H 0.08 0.74 6.29 -51.93 -0.33 0.41 16 36 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 37 H 0.08 1.58 7.68 -51.93 -0.40 1.19 16 38 H 0.08 1.17 6.53 -51.93 -0.34 0.83 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 1.11 7.64 -51.93 -0.40 0.71 16 41 H 0.04 0.86 6.49 -51.93 -0.34 0.52 16 42 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 330.71 15.07 4.98 4.98 Total: -1.00 -35.61 330.71 -7.07 -42.68 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.04 Total: -2.72 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 0.56 Total: 6.57 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.25 Total: -52.87 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.76 Total: -16.33 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.56 Total: 17.69 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.61 -7.07 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230848158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.027 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds