Wall clock time and date at job start Mon Mar 30 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47455 * 2 1 4 4 C 1.42888 * 114.00323 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47212 * 29.99793 * 4 3 2 6 6 C 1.53004 * 109.47127 * 270.00130 * 4 3 2 7 7 C 1.50699 * 109.47322 * 150.00108 * 4 3 2 8 8 O 1.21280 * 119.99735 * 4.99924 * 7 4 3 9 9 N 1.34778 * 120.00033 * 185.00025 * 7 4 3 10 10 C 1.46493 * 120.00285 * 5.68685 * 9 7 4 11 11 C 1.46501 * 120.00075 * 185.68689 * 9 7 4 12 12 C 1.53000 * 109.47088 * 275.40091 * 11 9 7 13 13 H 1.09005 * 112.96712 * 71.10335 * 12 11 9 14 14 C 1.53940 * 113.76885 * 299.42290 * 12 11 9 15 15 C 1.53941 * 86.29344 * 221.97873 * 14 12 11 16 16 N 1.47575 * 113.77021 * 202.77750 * 12 11 9 17 17 C 1.36939 * 134.49541 * 319.05782 * 16 12 11 18 18 H 1.08001 * 120.00096 * 31.20763 * 17 16 12 19 19 C 1.38818 * 120.00050 * 211.20171 * 17 16 12 20 20 N 1.31618 * 119.99503 * 187.50972 * 19 17 16 21 21 Si 1.86795 * 119.99792 * 7.51544 * 19 17 16 22 22 H 1.48500 * 109.47293 * 84.01709 * 21 19 17 23 23 H 1.48504 * 109.46837 * 204.01452 * 21 19 17 24 24 H 1.48501 * 109.47363 * 324.01704 * 21 19 17 25 25 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46834 * 299.99443 * 1 2 3 27 27 H 1.09000 * 109.47028 * 59.99772 * 1 2 3 28 28 H 1.09001 * 109.46970 * 239.99692 * 2 1 3 29 29 H 1.09000 * 109.47028 * 120.00228 * 2 1 3 30 30 H 1.09000 * 109.46799 * 299.99916 * 6 4 3 31 31 H 1.08997 * 109.47213 * 60.00306 * 6 4 3 32 32 H 1.09004 * 109.47095 * 180.02562 * 6 4 3 33 33 H 1.09000 * 109.47108 * 270.00141 * 10 9 7 34 34 H 1.09002 * 109.47308 * 29.99808 * 10 9 7 35 35 H 1.08998 * 109.47572 * 150.00245 * 10 9 7 36 36 H 1.08996 * 109.47330 * 155.39866 * 11 9 7 37 37 H 1.09005 * 109.46715 * 35.39692 * 11 9 7 38 38 H 1.08994 * 113.74306 * 336.32614 * 14 12 11 39 39 H 1.09006 * 113.73990 * 107.52825 * 14 12 11 40 40 H 1.08993 * 113.77438 * 137.90749 * 15 14 12 41 41 H 1.08997 * 113.77439 * 269.19970 * 15 14 12 42 42 H 0.97002 * 119.99258 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.9399 1.5001 1.4417 7 6 3.8342 2.7264 -0.7109 8 8 2.9856 3.5049 -1.0914 9 7 5.1380 2.9939 -0.9234 10 6 6.1558 1.9989 -0.5770 11 6 5.5373 4.2797 -1.5008 12 6 5.4463 4.2040 -3.0263 13 1 4.4193 4.1720 -3.3900 14 6 6.3591 3.1327 -3.6499 15 6 6.6842 4.1810 -4.7293 16 7 6.2933 5.1919 -3.7224 17 6 6.5954 6.5116 -3.5167 18 1 6.6216 6.9095 -2.5130 19 6 6.8682 7.3380 -4.5982 20 7 7.3018 8.5642 -4.3964 21 14 6.6198 6.7097 -6.3397 22 1 5.1960 6.8757 -6.7275 23 1 7.4800 7.4820 -7.2719 24 1 6.9860 5.2720 -6.4042 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5076 2.3585 1.9558 31 1 3.6483 0.5841 1.9555 32 1 5.0265 1.5866 1.4413 33 1 6.4796 2.1536 0.4523 34 1 5.7355 0.9984 -0.6791 35 1 7.0097 2.1044 -1.2462 36 1 6.5627 4.5064 -1.2088 37 1 4.8738 5.0637 -1.1357 38 1 7.2122 2.8660 -3.0262 39 1 5.8208 2.2635 -4.0279 40 1 7.7386 4.2179 -5.0025 41 1 6.0220 4.1411 -5.5941 42 1 7.4921 9.1418 -5.1522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230848158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:36 Heat of formation + Delta-G solvation = -34.936861 kcal Electronic energy + Delta-G solvation = -21645.550404 eV Core-core repulsion = 18434.594359 eV Total energy + Delta-G solvation = -3210.956045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34968 -39.88023 -38.64241 -36.53951 -34.44281 -33.40921 -31.32315 -30.33693 -29.73238 -27.58802 -25.67994 -24.95258 -24.05079 -23.38470 -21.23002 -20.31037 -18.82419 -18.11496 -17.88715 -17.40525 -16.98291 -16.64867 -16.47546 -15.69620 -15.48421 -14.92955 -14.81304 -14.53782 -14.17224 -14.07785 -13.79944 -13.69927 -13.51229 -13.29101 -13.15007 -13.09679 -12.78679 -12.64899 -12.49419 -12.22897 -12.03138 -11.96717 -11.84564 -11.63183 -11.16758 -10.89653 -10.62503 -10.40331 -9.68655 -8.92045 -8.18427 -5.59607 1.33623 1.37525 1.43975 1.58401 1.74332 2.43140 2.81430 3.11046 3.12844 3.52173 3.76389 3.86726 4.03047 4.14406 4.22504 4.25486 4.33276 4.37110 4.44626 4.51108 4.57452 4.62559 4.76159 4.81025 4.81935 4.84868 4.91085 4.95528 5.00971 5.03794 5.06942 5.26050 5.28109 5.30831 5.59738 5.60486 6.15735 6.16402 6.47803 6.53411 7.19366 7.42167 8.30510 9.02350 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.004219 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.906652 B = 6635.541513 C = 6823.718792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.079 3.921 5 H 0.121 0.879 6 C -0.168 4.168 7 C 0.499 3.501 8 O -0.581 6.581 9 N -0.600 5.600 10 C 0.062 3.938 11 C 0.136 3.864 12 C 0.120 3.880 13 H 0.025 0.975 14 C -0.112 4.112 15 C 0.100 3.900 16 N -0.641 5.641 17 C -0.222 4.222 18 H 0.054 0.946 19 C -0.039 4.039 20 N -0.968 5.968 21 Si 0.918 3.082 22 H -0.300 1.300 23 H -0.303 1.303 24 H -0.195 1.195 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -26.603 10.548 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.318 6.318 4 C 0.018 3.982 5 H 0.138 0.862 6 C -0.225 4.225 7 C 0.288 3.712 8 O -0.460 6.460 9 N -0.333 5.333 10 C -0.079 4.079 11 C 0.012 3.988 12 C 0.013 3.987 13 H 0.043 0.957 14 C -0.149 4.149 15 C -0.024 4.024 16 N -0.370 5.370 17 C -0.351 4.351 18 H 0.072 0.928 19 C -0.233 4.233 20 N -0.615 5.615 21 Si 0.745 3.255 22 H -0.228 1.228 23 H -0.230 1.230 24 H -0.118 1.118 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.411 -25.713 10.328 28.058 hybrid contribution -0.340 1.167 -1.046 1.604 sum -4.751 -24.546 9.281 26.669 Atomic orbital electron populations 1.21781 0.93542 1.03446 1.02189 1.22837 0.96090 0.82192 1.01708 1.88043 1.19721 1.28805 1.95191 1.21997 0.83196 0.95101 0.97907 0.86194 1.22314 1.03326 1.03817 0.93043 1.21339 0.82202 0.88689 0.79017 1.90714 1.51558 1.51354 1.52400 1.47799 1.06295 1.17438 1.61816 1.22402 0.91588 0.91480 1.02423 1.21237 1.00110 0.84532 0.92950 1.22735 0.93697 0.89131 0.93088 0.95691 1.23438 0.99302 0.95259 0.96934 1.23151 0.98842 0.87392 0.93024 1.46730 1.51244 1.06641 1.32374 1.18544 1.40152 0.83691 0.92684 0.92828 1.26066 0.99964 0.94809 1.02468 1.69896 1.50990 1.08701 1.31896 0.86408 0.76864 0.82440 0.79783 1.22761 1.23031 1.11764 0.88376 0.92498 0.93532 0.92105 0.90702 0.93616 0.88738 0.88347 0.90210 0.88116 0.89479 0.89058 0.94620 0.87582 0.89514 0.92212 0.94054 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.74 6.47 71.98 0.47 1.20 16 3 O -0.40 -10.13 9.52 -129.99 -1.24 -11.37 16 4 C 0.08 1.60 2.34 29.85 0.07 1.67 16 5 H 0.12 1.49 6.61 -2.39 -0.02 1.48 16 6 C -0.17 -2.40 9.35 71.98 0.67 -1.73 16 7 C 0.50 15.37 7.01 87.66 0.61 15.99 16 8 O -0.58 -25.48 16.24 15.96 0.26 -25.22 16 9 N -0.60 -15.85 2.71 -846.77 -2.30 -18.15 16 10 C 0.06 0.85 8.70 127.77 1.11 1.96 16 11 C 0.14 4.93 5.26 86.38 0.45 5.39 16 12 C 0.12 4.82 4.57 45.09 0.21 5.03 16 13 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 14 C -0.11 -3.34 7.19 31.25 0.22 -3.12 16 15 C 0.10 3.90 5.57 86.41 0.48 4.38 16 16 N -0.64 -31.10 3.17 -690.63 -2.19 -33.28 16 17 C -0.22 -13.19 10.95 84.03 0.92 -12.27 16 18 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 19 C -0.04 -2.37 5.50 84.86 0.47 -1.90 16 20 N -0.97 -63.56 13.97 21.65 0.30 -63.26 16 21 Si 0.92 46.25 26.85 68.60 1.84 48.10 16 22 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 23 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 24 H -0.19 -8.33 3.90 99.48 0.39 -7.94 16 25 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.07 0.75 7.87 -2.39 -0.02 0.74 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.86 7.87 -2.39 -0.02 0.84 16 32 H 0.10 0.98 5.41 -2.38 -0.01 0.97 16 33 H 0.08 0.80 6.88 -2.39 -0.02 0.79 16 34 H 0.10 0.73 6.34 -2.39 -0.02 0.72 16 35 H 0.09 1.13 6.29 -2.39 -0.02 1.11 16 36 H 0.09 3.18 8.03 -2.39 -0.02 3.16 16 37 H 0.04 1.56 7.68 -2.38 -0.02 1.54 16 38 H 0.11 2.62 6.53 -2.39 -0.02 2.60 16 39 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.06 2.28 7.64 -2.39 -0.02 2.26 16 41 H 0.04 1.64 6.49 -2.39 -0.02 1.62 16 42 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -85.22 330.71 3.78 -81.44 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 0.67 Total: 6.73 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.43 Total: 15.02 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -4.18 Total: -114.69 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.98 Total: -36.59 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.84 Total: 48.10 kcal Total: -85.22 3.78 -81.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230848158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.503 kcal (2) G-P(sol) polarization free energy of solvation -85.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds