Wall clock time and date at job start Mon Mar 30 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46810 * 2 1 4 4 C 1.42897 * 114.00174 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47135 * 330.00559 * 4 3 2 6 6 C 1.52996 * 109.46904 * 90.00139 * 4 3 2 7 7 C 1.50694 * 109.47551 * 210.00493 * 4 3 2 8 8 O 1.21290 * 119.99970 * 346.79569 * 7 4 3 9 9 N 1.34778 * 120.00417 * 166.79931 * 7 4 3 10 10 C 1.46495 * 120.00040 * 176.47219 * 9 7 4 11 11 C 1.46503 * 119.99729 * 356.46801 * 9 7 4 12 12 C 1.53002 * 109.46995 * 97.99109 * 11 9 7 13 13 H 1.08994 * 112.73579 * 317.97866 * 12 11 9 14 14 C 1.53612 * 113.55642 * 88.72893 * 12 11 9 15 15 C 1.53496 * 83.30480 * 140.82467 * 14 12 11 16 16 N 1.47067 * 88.05112 * 333.97979 * 15 14 12 17 17 C 1.36927 * 136.06233 * 207.06025 * 16 15 14 18 18 H 1.08003 * 120.00347 * 173.81856 * 17 16 15 19 19 C 1.38819 * 119.99966 * 353.82052 * 17 16 15 20 20 N 1.31617 * 119.99614 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47206 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46842 * 119.99621 * 21 19 17 24 24 H 1.48493 * 109.47100 * 239.99806 * 21 19 17 25 25 H 1.09006 * 109.47437 * 299.99847 * 1 2 3 26 26 H 1.09000 * 109.47712 * 59.99513 * 1 2 3 27 27 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47341 * 240.00629 * 2 1 3 29 29 H 1.08996 * 109.47485 * 119.99772 * 2 1 3 30 30 H 1.09003 * 109.47183 * 69.87439 * 6 4 3 31 31 H 1.09003 * 109.47044 * 189.86770 * 6 4 3 32 32 H 1.09001 * 109.47219 * 309.86927 * 6 4 3 33 33 H 1.09000 * 109.47303 * 275.08454 * 10 9 7 34 34 H 1.09001 * 109.47706 * 35.08969 * 10 9 7 35 35 H 1.09002 * 109.46986 * 155.09065 * 10 9 7 36 36 H 1.08999 * 109.46898 * 337.98994 * 11 9 7 37 37 H 1.08998 * 109.47109 * 217.99094 * 11 9 7 38 38 H 1.09003 * 114.20739 * 27.25347 * 14 12 11 39 39 H 1.09003 * 114.23473 * 254.39218 * 14 12 11 40 40 H 1.08994 * 113.47028 * 219.16772 * 15 14 12 41 41 H 1.09004 * 113.46862 * 88.78863 * 15 14 12 42 42 H 0.97003 * 119.99799 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4307 1.4603 0.0006 5 1 3.8631 0.6018 0.5147 6 6 3.9397 1.5004 -1.4417 7 6 3.8340 2.7266 0.7110 8 8 3.0024 3.5739 0.9592 9 7 5.1188 2.9177 1.0707 10 6 5.5256 4.1807 1.6916 11 6 6.1086 1.8623 0.8407 12 6 6.8759 2.1553 -0.4501 13 1 6.2293 2.5066 -1.2541 14 6 8.1194 3.0323 -0.2395 15 6 8.7377 2.0932 -1.2844 16 7 7.7764 1.0658 -0.8563 17 6 7.7368 -0.3028 -0.8426 18 1 6.9144 -0.8146 -0.3649 19 6 8.7538 -1.0327 -1.4427 20 7 9.7559 -0.4090 -2.0252 21 14 8.7003 -2.8998 -1.4234 22 1 7.4781 -3.3526 -0.7116 23 1 8.6772 -3.4088 -2.8182 24 1 9.9024 -3.4223 -0.7255 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.6520 2.4455 -1.9024 31 1 5.0259 1.4099 -1.4463 32 1 3.5038 0.6746 -2.0039 33 1 5.7417 4.9143 0.9150 34 1 4.7198 4.5498 2.3261 35 1 6.4181 4.0176 2.2957 36 1 5.6013 0.9017 0.7517 37 1 6.8055 1.8290 1.6781 38 1 8.5618 2.9495 0.7533 39 1 8.0031 4.0621 -0.5774 40 1 9.7747 1.8321 -1.0738 41 1 8.5876 2.4272 -2.3111 42 1 10.4663 -0.9190 -2.4449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230848160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:40 Heat of formation + Delta-G solvation = -16.768981 kcal Electronic energy + Delta-G solvation = -22069.721576 eV Core-core repulsion = 18859.553350 eV Total energy + Delta-G solvation = -3210.168227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13384 -38.29093 -37.57780 -35.11056 -32.40666 -32.26296 -30.22494 -28.30099 -28.00938 -26.72607 -23.73812 -23.53597 -22.58597 -22.41430 -19.49487 -18.89653 -17.27729 -16.97494 -16.68832 -15.81080 -15.46542 -15.17735 -14.93152 -14.19668 -13.94705 -13.80167 -13.37902 -13.05831 -12.85293 -12.71895 -12.43464 -12.31359 -12.07842 -11.90193 -11.62139 -11.59680 -11.33009 -11.19663 -11.06597 -10.85897 -10.80104 -10.50950 -10.00811 -9.90158 -9.78290 -9.56215 -9.21945 -8.88500 -8.34854 -6.96967 -5.86681 -3.19447 2.78007 2.91580 3.31862 3.36588 3.40038 3.87956 4.35454 4.63539 4.89294 4.98170 5.04714 5.20236 5.24533 5.32612 5.33924 5.41690 5.48583 5.55903 5.60579 5.67326 5.81389 5.82870 5.84628 5.90312 5.95032 5.95944 6.06042 6.13381 6.34996 6.41250 6.46336 6.60812 6.76600 7.11938 7.15277 7.30941 7.47389 7.55438 7.87889 8.35857 8.93258 9.60988 10.54641 11.31181 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.006314 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.179485 B = 4433.271049 C = 5845.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.074 3.926 5 H 0.084 0.916 6 C -0.181 4.181 7 C 0.518 3.482 8 O -0.533 6.533 9 N -0.607 5.607 10 C 0.091 3.909 11 C 0.102 3.898 12 C 0.121 3.879 13 H 0.053 0.947 14 C -0.167 4.167 15 C 0.158 3.842 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.003 4.003 20 N -0.915 5.915 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 3.626 5.042 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.281 6.281 4 C 0.013 3.987 5 H 0.102 0.898 6 C -0.239 4.239 7 C 0.305 3.695 8 O -0.409 6.409 9 N -0.342 5.342 10 C -0.052 4.052 11 C -0.022 4.022 12 C 0.013 3.987 13 H 0.070 0.930 14 C -0.206 4.206 15 C 0.032 3.968 16 N -0.326 5.326 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.200 4.200 20 N -0.561 5.561 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.122 3.883 5.107 11.983 hybrid contribution 0.324 -1.384 -0.276 1.448 sum -9.798 2.499 4.830 11.206 Atomic orbital electron populations 1.21715 0.93635 1.02031 1.03188 1.22578 0.95669 0.83807 1.00327 1.87998 1.18940 1.26117 1.95066 1.21904 0.82953 0.96463 0.97399 0.89828 1.22509 1.04221 1.03096 0.94031 1.20356 0.82012 0.88383 0.78748 1.90664 1.50286 1.45489 1.54441 1.47813 1.08031 1.17557 1.60804 1.21587 1.00497 0.85246 0.97832 1.22182 0.90835 0.89486 0.99717 1.22725 0.92630 0.89871 0.93505 0.92997 1.23766 0.98722 0.97033 1.01057 1.21933 0.96208 0.85110 0.93552 1.45671 1.15033 0.99689 1.72186 1.18877 1.06773 0.78641 1.30661 0.90190 1.24808 0.97563 0.97887 0.99765 1.69848 1.11623 1.33889 1.40763 0.86118 0.77442 0.85245 0.77359 1.20415 1.21685 1.21649 0.91868 0.91820 0.91148 0.92999 0.93346 0.91797 0.88377 0.91351 0.92709 0.91276 0.90930 0.90256 0.89938 0.90465 0.92592 0.91665 0.95541 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.14 16 2 C 0.05 0.65 6.46 37.16 0.24 0.89 16 3 O -0.36 -5.81 9.56 -54.79 -0.52 -6.34 16 4 C 0.07 1.15 2.32 -27.89 -0.06 1.09 16 5 H 0.08 1.21 6.21 -51.93 -0.32 0.89 16 6 C -0.18 -2.79 9.08 37.16 0.34 -2.46 16 7 C 0.52 8.88 6.97 -10.99 -0.08 8.81 16 8 O -0.53 -10.74 16.19 -14.01 -0.23 -10.97 16 9 N -0.61 -9.23 2.88 -181.57 -0.52 -9.75 16 10 C 0.09 1.17 10.42 59.84 0.62 1.79 16 11 C 0.10 1.61 4.90 -4.04 -0.02 1.59 16 12 C 0.12 2.20 3.04 -72.34 -0.22 1.98 16 13 H 0.05 0.98 6.12 -51.93 -0.32 0.67 16 14 C -0.17 -2.88 8.03 -26.16 -0.21 -3.09 16 15 C 0.16 3.48 7.25 -8.51 -0.06 3.42 16 16 N -0.60 -13.89 3.65 -176.80 -0.64 -14.53 16 17 C -0.22 -5.68 10.55 -15.06 -0.16 -5.84 16 18 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 19 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 20 N -0.92 -26.00 11.67 55.49 0.65 -25.36 16 21 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.60 7.73 -51.93 -0.40 0.19 16 29 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.10 1.67 4.09 -51.93 -0.21 1.45 16 32 H 0.07 0.97 7.72 -51.93 -0.40 0.57 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 35 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 36 H 0.08 1.29 5.75 -51.93 -0.30 0.99 16 37 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 38 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.60 7.41 -51.93 -0.38 1.21 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -31.21 336.91 -7.42 -38.62 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.88 Total: 0.38 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 0.68 Total: 6.88 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.52 Total: -49.64 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.75 Total: -17.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.21 -7.42 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230848160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.852 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds