Wall clock time and date at job start Mon Mar 30 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46810 * 2 1 4 4 C 1.42897 * 114.00174 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47135 * 330.00559 * 4 3 2 6 6 C 1.52996 * 109.46904 * 90.00139 * 4 3 2 7 7 C 1.50694 * 109.47551 * 210.00493 * 4 3 2 8 8 O 1.21290 * 119.99970 * 346.79569 * 7 4 3 9 9 N 1.34778 * 120.00417 * 166.79931 * 7 4 3 10 10 C 1.46495 * 120.00040 * 176.47219 * 9 7 4 11 11 C 1.46503 * 119.99729 * 356.46801 * 9 7 4 12 12 C 1.53002 * 109.46995 * 97.99109 * 11 9 7 13 13 H 1.08994 * 112.73579 * 317.97866 * 12 11 9 14 14 C 1.53612 * 113.55642 * 88.72893 * 12 11 9 15 15 C 1.53496 * 83.30480 * 140.82467 * 14 12 11 16 16 N 1.47067 * 88.05112 * 333.97979 * 15 14 12 17 17 C 1.36927 * 136.06233 * 207.06025 * 16 15 14 18 18 H 1.08003 * 120.00347 * 173.81856 * 17 16 15 19 19 C 1.38819 * 119.99966 * 353.82052 * 17 16 15 20 20 N 1.31617 * 119.99614 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47206 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46842 * 119.99621 * 21 19 17 24 24 H 1.48493 * 109.47100 * 239.99806 * 21 19 17 25 25 H 1.09006 * 109.47437 * 299.99847 * 1 2 3 26 26 H 1.09000 * 109.47712 * 59.99513 * 1 2 3 27 27 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47341 * 240.00629 * 2 1 3 29 29 H 1.08996 * 109.47485 * 119.99772 * 2 1 3 30 30 H 1.09003 * 109.47183 * 69.87439 * 6 4 3 31 31 H 1.09003 * 109.47044 * 189.86770 * 6 4 3 32 32 H 1.09001 * 109.47219 * 309.86927 * 6 4 3 33 33 H 1.09000 * 109.47303 * 275.08454 * 10 9 7 34 34 H 1.09001 * 109.47706 * 35.08969 * 10 9 7 35 35 H 1.09002 * 109.46986 * 155.09065 * 10 9 7 36 36 H 1.08999 * 109.46898 * 337.98994 * 11 9 7 37 37 H 1.08998 * 109.47109 * 217.99094 * 11 9 7 38 38 H 1.09003 * 114.20739 * 27.25347 * 14 12 11 39 39 H 1.09003 * 114.23473 * 254.39218 * 14 12 11 40 40 H 1.08994 * 113.47028 * 219.16772 * 15 14 12 41 41 H 1.09004 * 113.46862 * 88.78863 * 15 14 12 42 42 H 0.97003 * 119.99799 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4307 1.4603 0.0006 5 1 3.8631 0.6018 0.5147 6 6 3.9397 1.5004 -1.4417 7 6 3.8340 2.7266 0.7110 8 8 3.0024 3.5739 0.9592 9 7 5.1188 2.9177 1.0707 10 6 5.5256 4.1807 1.6916 11 6 6.1086 1.8623 0.8407 12 6 6.8759 2.1553 -0.4501 13 1 6.2293 2.5066 -1.2541 14 6 8.1194 3.0323 -0.2395 15 6 8.7377 2.0932 -1.2844 16 7 7.7764 1.0658 -0.8563 17 6 7.7368 -0.3028 -0.8426 18 1 6.9144 -0.8146 -0.3649 19 6 8.7538 -1.0327 -1.4427 20 7 9.7559 -0.4090 -2.0252 21 14 8.7003 -2.8998 -1.4234 22 1 7.4781 -3.3526 -0.7116 23 1 8.6772 -3.4088 -2.8182 24 1 9.9024 -3.4223 -0.7255 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.6520 2.4455 -1.9024 31 1 5.0259 1.4099 -1.4463 32 1 3.5038 0.6746 -2.0039 33 1 5.7417 4.9143 0.9150 34 1 4.7198 4.5498 2.3261 35 1 6.4181 4.0176 2.2957 36 1 5.6013 0.9017 0.7517 37 1 6.8055 1.8290 1.6781 38 1 8.5618 2.9495 0.7533 39 1 8.0031 4.0621 -0.5774 40 1 9.7747 1.8321 -1.0738 41 1 8.5876 2.4272 -2.3111 42 1 10.4663 -0.9190 -2.4449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230848160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:40 Heat of formation + Delta-G solvation = -35.815579 kcal Electronic energy + Delta-G solvation = -22070.547499 eV Core-core repulsion = 18859.553350 eV Total energy + Delta-G solvation = -3210.994149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44550 -39.82065 -38.77982 -36.48915 -34.18717 -33.47512 -31.25883 -29.85743 -29.62010 -27.95808 -25.37074 -24.86041 -23.92085 -23.55874 -21.11536 -20.21654 -18.68224 -18.47064 -18.02702 -17.03483 -16.80190 -16.65840 -16.29175 -15.82127 -15.31325 -15.23986 -14.66069 -14.39716 -14.14816 -13.94575 -13.64138 -13.43684 -13.32116 -13.17437 -13.06085 -12.91261 -12.83213 -12.61132 -12.42593 -12.28407 -12.17212 -12.03122 -11.75589 -11.56063 -11.26085 -10.89169 -10.80169 -10.49065 -9.68440 -8.85476 -7.86310 -5.18231 1.45729 1.49200 1.50131 1.59003 1.73585 2.49423 2.77302 3.30788 3.38251 3.53884 3.77717 3.91202 3.95546 4.16114 4.21978 4.28227 4.31002 4.42354 4.44526 4.49413 4.62488 4.66544 4.70548 4.78694 4.85769 4.92741 4.97041 4.98462 5.02872 5.06549 5.22277 5.24549 5.30800 5.45312 5.60504 5.74658 5.96320 6.05259 6.29400 6.95328 7.06747 7.66370 8.66397 9.32523 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.006314 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.179485 B = 4433.271049 C = 5845.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.386 6.386 4 C 0.075 3.925 5 H 0.096 0.904 6 C -0.172 4.172 7 C 0.514 3.486 8 O -0.568 6.568 9 N -0.600 5.600 10 C 0.084 3.916 11 C 0.113 3.887 12 C 0.127 3.873 13 H 0.051 0.949 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.622 5.622 17 C -0.214 4.214 18 H 0.093 0.907 19 C -0.066 4.066 20 N -0.954 5.954 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.300 1.300 24 H -0.297 1.297 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.011 0.989 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 3.423 6.284 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.305 6.305 4 C 0.014 3.986 5 H 0.114 0.886 6 C -0.229 4.229 7 C 0.302 3.698 8 O -0.447 6.447 9 N -0.333 5.333 10 C -0.057 4.057 11 C -0.011 4.011 12 C 0.020 3.980 13 H 0.068 0.932 14 C -0.177 4.177 15 C 0.022 3.978 16 N -0.349 5.349 17 C -0.342 4.342 18 H 0.111 0.889 19 C -0.259 4.259 20 N -0.604 5.604 21 Si 0.797 3.203 22 H -0.183 1.183 23 H -0.227 1.227 24 H -0.224 1.224 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.029 0.971 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.247 3.693 6.378 13.446 hybrid contribution 0.622 -1.262 -0.666 1.557 sum -10.625 2.431 5.712 12.305 Atomic orbital electron populations 1.21742 0.92232 1.03578 1.02710 1.22864 0.96901 0.82389 1.01177 1.87985 1.18913 1.28429 1.95160 1.21892 0.83268 0.96195 0.97202 0.88595 1.22395 1.03085 1.03206 0.94265 1.20678 0.82254 0.88477 0.78433 1.90645 1.51272 1.46720 1.56036 1.47821 1.07263 1.18155 1.60045 1.21802 1.01433 0.84241 0.98235 1.21994 0.90811 0.89587 0.98702 1.22774 0.92831 0.88082 0.94339 0.93151 1.23607 0.96519 0.97499 1.00028 1.21932 0.94770 0.86730 0.94364 1.45972 1.16912 0.99820 1.72163 1.19320 1.06103 0.80168 1.28622 0.88896 1.25560 0.97877 1.01748 1.00743 1.70029 1.12536 1.34976 1.42818 0.85160 0.77705 0.80764 0.76668 1.18276 1.22725 1.22437 0.92428 0.92214 0.88576 0.92200 0.92364 0.92421 0.89863 0.90325 0.92048 0.91683 0.88323 0.90400 0.88565 0.88974 0.89672 0.94881 0.97079 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.28 71.98 0.74 -1.96 16 2 C 0.04 0.97 6.46 71.98 0.46 1.43 16 3 O -0.39 -11.87 9.56 -130.28 -1.24 -13.12 16 4 C 0.08 2.24 2.32 29.85 0.07 2.31 16 5 H 0.10 2.57 6.21 -2.39 -0.01 2.55 16 6 C -0.17 -5.08 9.08 71.98 0.65 -4.42 16 7 C 0.51 16.81 6.97 87.66 0.61 17.42 16 8 O -0.57 -22.39 16.19 15.63 0.25 -22.14 16 9 N -0.60 -16.70 2.88 -846.75 -2.44 -19.14 16 10 C 0.08 1.92 10.42 127.77 1.33 3.25 16 11 C 0.11 3.26 4.90 86.38 0.42 3.68 16 12 C 0.13 4.34 3.04 41.83 0.13 4.47 16 13 H 0.05 1.82 6.12 -2.39 -0.01 1.80 16 14 C -0.14 -4.40 8.03 30.97 0.25 -4.15 16 15 C 0.15 6.52 7.25 83.18 0.60 7.13 16 16 N -0.62 -28.27 3.65 -713.28 -2.60 -30.87 16 17 C -0.21 -10.73 10.55 84.04 0.89 -9.84 16 18 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 20 N -0.95 -55.51 11.67 21.65 0.25 -55.26 16 21 Si 0.97 43.18 29.55 68.60 2.03 45.21 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 25 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.25 7.73 -2.39 -0.02 1.23 16 29 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 30 H 0.06 1.74 8.11 -2.39 -0.02 1.72 16 31 H 0.08 2.71 4.09 -2.39 -0.01 2.70 16 32 H 0.08 2.12 7.72 -2.39 -0.02 2.10 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.56 7.53 -2.39 -0.02 1.54 16 35 H 0.10 1.72 7.92 -2.39 -0.02 1.71 16 36 H 0.08 2.31 5.75 -2.39 -0.01 2.30 16 37 H 0.10 2.58 7.70 -2.39 -0.02 2.57 16 38 H 0.09 2.70 7.92 -2.39 -0.02 2.68 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.03 1.65 7.41 -2.39 -0.02 1.63 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -67.75 336.91 3.87 -63.88 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.99 Total: 15.21 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 6.63 Total: 16.23 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.79 Total: -105.27 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.99 Total: -35.25 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.75 3.87 -63.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230848160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.064 kcal (2) G-P(sol) polarization free energy of solvation -67.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds