Wall clock time and date at job start Mon Mar 30 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47329 * 2 1 4 4 C 1.42905 * 113.99925 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46839 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46997 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99866 * 0.02562 * 6 5 4 8 8 N 1.34782 * 120.00178 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99673 * 0.02562 * 8 6 5 10 10 C 1.46497 * 119.99957 * 179.97438 * 8 6 5 11 11 C 1.53001 * 109.46713 * 90.21209 * 10 8 6 12 12 H 1.09004 * 112.74023 * 43.11855 * 11 10 8 13 13 C 1.53493 * 113.52484 * 272.32168 * 11 10 8 14 14 C 1.53750 * 83.25997 * 218.97864 * 13 11 10 15 15 N 1.47068 * 87.88968 * 26.23646 * 14 13 11 16 16 C 1.36930 * 136.05575 * 152.96333 * 15 14 13 17 17 H 1.08002 * 120.00155 * 176.85227 * 16 15 14 18 18 C 1.38817 * 120.00079 * 357.13465 * 16 15 14 19 19 N 1.31613 * 119.99851 * 359.71881 * 18 16 15 20 20 Si 1.86803 * 119.99748 * 179.72291 * 18 16 15 21 21 H 1.48500 * 109.47325 * 60.00046 * 20 18 16 22 22 H 1.48501 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47415 * 299.99592 * 20 18 16 24 24 H 1.09003 * 109.46719 * 59.99805 * 1 2 3 25 25 H 1.08992 * 109.47231 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46529 * 300.00114 * 1 2 3 27 27 H 1.09003 * 109.46823 * 240.00062 * 2 1 3 28 28 H 1.09000 * 109.47202 * 120.00366 * 2 1 3 29 29 H 1.08999 * 109.46745 * 60.00181 * 4 3 2 30 30 H 1.08997 * 109.46785 * 300.00039 * 4 3 2 31 31 H 1.09009 * 109.47185 * 60.00145 * 5 4 3 32 32 H 1.08994 * 109.47644 * 300.00317 * 5 4 3 33 33 H 1.09009 * 109.46669 * 273.42130 * 9 8 6 34 34 H 1.08992 * 109.47660 * 33.42407 * 9 8 6 35 35 H 1.08997 * 109.47265 * 153.42882 * 9 8 6 36 36 H 1.09000 * 109.47356 * 330.21633 * 10 8 6 37 37 H 1.08994 * 109.47369 * 210.21114 * 10 8 6 38 38 H 1.09001 * 114.20096 * 332.73325 * 13 11 10 39 39 H 1.08993 * 114.20898 * 105.35690 * 13 11 10 40 40 H 1.09000 * 113.46282 * 271.50227 * 14 13 11 41 41 H 1.09001 * 113.55805 * 140.98789 * 14 13 11 42 42 H 0.97005 * 119.99855 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3278 3.0572 -0.0012 7 8 6.0152 2.0580 -0.0012 8 7 5.9075 4.2740 -0.0022 9 6 5.0771 5.4809 -0.0027 10 6 7.3679 4.3896 -0.0016 11 6 7.8765 4.4336 -1.4439 12 1 7.2727 5.0768 -2.0841 13 6 8.1375 3.0453 -2.0442 14 6 9.3543 3.7449 -2.6718 15 7 9.3204 4.6930 -1.5481 16 6 10.2312 5.4768 -0.8916 17 1 9.9054 6.1373 -0.1016 18 6 11.5726 5.4268 -1.2453 19 7 11.9697 4.6219 -2.2080 20 14 12.8140 6.5018 -0.3549 21 1 12.8118 6.1664 1.0917 22 1 14.1681 6.2628 -0.9158 23 1 12.4493 7.9302 -0.5324 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8333 0.9766 -0.8908 30 1 3.8341 0.9763 0.8891 31 1 3.4231 3.4221 0.8889 32 1 3.4224 3.4216 -0.8910 33 1 4.8203 5.7447 -1.0287 34 1 4.1648 5.2945 0.5637 35 1 5.6285 6.3015 0.4563 36 1 7.8003 3.5297 0.5100 37 1 7.6598 5.3041 0.5147 38 1 8.3877 2.2804 -1.3089 39 1 7.3862 2.7212 -2.7643 40 1 9.1400 4.2064 -3.6357 41 1 10.2511 3.1257 -2.6905 42 1 12.9072 4.5867 -2.4550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231103416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:58 Heat of formation + Delta-G solvation = -25.760148 kcal Electronic energy + Delta-G solvation = -21023.177792 eV Core-core repulsion = 17812.619679 eV Total energy + Delta-G solvation = -3210.558113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89289 -38.23600 -37.71318 -35.21631 -32.70087 -32.13129 -30.56546 -28.32176 -27.83107 -26.32925 -23.83595 -23.31715 -23.00265 -21.78727 -19.13689 -18.87162 -17.40937 -16.78307 -16.54055 -16.10427 -15.79692 -15.45703 -14.77982 -14.47126 -14.14398 -13.87562 -13.42855 -13.34478 -12.90469 -12.67606 -12.61643 -12.24601 -12.09797 -12.04291 -11.78061 -11.44614 -11.26492 -11.19171 -11.02156 -10.81613 -10.70218 -10.38746 -9.81073 -9.76843 -9.72773 -9.63918 -9.37797 -8.74448 -8.26130 -6.82650 -5.71731 -3.05129 2.79524 2.98828 3.40971 3.44443 3.46452 3.65791 4.48348 4.65416 4.78745 4.83070 4.90884 5.03129 5.12249 5.16710 5.31955 5.35330 5.42669 5.45594 5.51187 5.61454 5.65334 5.67609 5.72502 5.74356 5.83958 5.94760 6.06158 6.12188 6.46360 6.58583 6.70661 6.84402 6.87009 7.00100 7.30831 7.51270 7.61350 7.65717 8.03899 8.36068 9.06984 9.74515 10.70493 11.45062 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.003363 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.025233 B = 8322.705238 C = 8653.601849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.395 6.395 4 C 0.078 3.922 5 C -0.137 4.137 6 C 0.514 3.486 7 O -0.534 6.534 8 N -0.610 5.610 9 C 0.078 3.922 10 C 0.116 3.884 11 C 0.131 3.869 12 H 0.039 0.961 13 C -0.153 4.153 14 C 0.148 3.852 15 N -0.601 5.601 16 C -0.218 4.218 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.082 -4.311 4.293 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.315 6.315 4 C 0.001 3.999 5 C -0.177 4.177 6 C 0.301 3.699 7 O -0.411 6.411 8 N -0.344 5.344 9 C -0.066 4.066 10 C -0.007 4.007 11 C 0.022 3.978 12 H 0.057 0.943 13 C -0.192 4.192 14 C 0.022 3.978 15 N -0.327 5.327 16 C -0.346 4.346 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.213 1.213 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.458 -4.532 4.369 21.405 hybrid contribution 0.840 0.719 0.283 1.141 sum -19.619 -3.813 4.652 20.520 Atomic orbital electron populations 1.21746 0.93825 1.02184 1.03052 1.22438 0.95361 0.83712 1.00325 1.87789 1.21431 1.26652 1.95606 1.22133 0.80292 0.95637 1.01833 1.21493 0.93216 0.97806 1.05158 1.20278 0.89731 0.83283 0.76616 1.90724 1.65139 1.35872 1.49349 1.47887 1.07800 1.05637 1.73080 1.21813 0.95261 0.87632 1.01866 1.21938 0.76630 1.02883 0.99263 1.22435 0.87757 0.94322 0.93244 0.94333 1.23650 0.99012 0.96340 1.00159 1.22151 0.95770 0.90078 0.89761 1.45623 1.01213 1.50822 1.35083 1.18826 0.86645 1.16328 1.12783 0.90397 1.24790 0.96781 0.99977 0.98880 1.69829 1.15242 1.40110 1.31318 0.86211 0.80725 0.79858 0.79012 1.21063 1.21565 1.21259 0.91863 0.91155 0.91925 0.93269 0.93351 0.92280 0.92451 0.88425 0.88271 0.92528 0.91410 0.90776 0.89591 0.90870 0.89987 0.93445 0.96228 0.90818 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.39 -4.42 10.34 -35.23 -0.36 -4.78 16 4 C 0.08 0.90 5.23 37.16 0.19 1.10 16 5 C -0.14 -1.50 4.67 -27.89 -0.13 -1.63 16 6 C 0.51 7.64 7.67 -10.99 -0.08 7.56 16 7 O -0.53 -9.93 14.98 5.55 0.08 -9.85 16 8 N -0.61 -8.93 2.87 -181.58 -0.52 -9.45 16 9 C 0.08 0.80 10.22 59.84 0.61 1.42 16 10 C 0.12 2.14 5.40 -4.04 -0.02 2.12 16 11 C 0.13 2.77 4.31 -72.40 -0.31 2.46 16 12 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.15 -3.28 7.46 -26.09 -0.19 -3.47 16 14 C 0.15 3.71 7.48 -8.38 -0.06 3.65 16 15 N -0.60 -15.80 3.65 -176.84 -0.64 -16.44 16 16 C -0.22 -6.15 10.55 -15.06 -0.16 -6.31 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.89 11.45 55.49 0.64 -27.25 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.73 8.10 -51.93 -0.42 0.30 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.10 0.90 7.41 -51.92 -0.38 0.51 16 32 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.07 0.52 6.58 -51.93 -0.34 0.18 16 35 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 36 H 0.09 1.78 7.13 -51.93 -0.37 1.41 16 37 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 38 H 0.08 1.85 7.92 -51.93 -0.41 1.44 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 2.04 7.00 -51.93 -0.36 1.67 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -33.30 345.09 -7.56 -40.86 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.30 Total: -2.26 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 0.38 Total: 6.68 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.53 Total: -53.14 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.28 Total: -14.63 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.30 -7.56 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231103416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.098 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds