Wall clock time and date at job start Mon Mar 30 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47329 * 2 1 4 4 C 1.42905 * 113.99925 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46839 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46997 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99866 * 0.02562 * 6 5 4 8 8 N 1.34782 * 120.00178 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99673 * 0.02562 * 8 6 5 10 10 C 1.46497 * 119.99957 * 179.97438 * 8 6 5 11 11 C 1.53001 * 109.46713 * 90.21209 * 10 8 6 12 12 H 1.09004 * 112.74023 * 43.11855 * 11 10 8 13 13 C 1.53493 * 113.52484 * 272.32168 * 11 10 8 14 14 C 1.53750 * 83.25997 * 218.97864 * 13 11 10 15 15 N 1.47068 * 87.88968 * 26.23646 * 14 13 11 16 16 C 1.36930 * 136.05575 * 152.96333 * 15 14 13 17 17 H 1.08002 * 120.00155 * 176.85227 * 16 15 14 18 18 C 1.38817 * 120.00079 * 357.13465 * 16 15 14 19 19 N 1.31613 * 119.99851 * 359.71881 * 18 16 15 20 20 Si 1.86803 * 119.99748 * 179.72291 * 18 16 15 21 21 H 1.48500 * 109.47325 * 60.00046 * 20 18 16 22 22 H 1.48501 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47415 * 299.99592 * 20 18 16 24 24 H 1.09003 * 109.46719 * 59.99805 * 1 2 3 25 25 H 1.08992 * 109.47231 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46529 * 300.00114 * 1 2 3 27 27 H 1.09003 * 109.46823 * 240.00062 * 2 1 3 28 28 H 1.09000 * 109.47202 * 120.00366 * 2 1 3 29 29 H 1.08999 * 109.46745 * 60.00181 * 4 3 2 30 30 H 1.08997 * 109.46785 * 300.00039 * 4 3 2 31 31 H 1.09009 * 109.47185 * 60.00145 * 5 4 3 32 32 H 1.08994 * 109.47644 * 300.00317 * 5 4 3 33 33 H 1.09009 * 109.46669 * 273.42130 * 9 8 6 34 34 H 1.08992 * 109.47660 * 33.42407 * 9 8 6 35 35 H 1.08997 * 109.47265 * 153.42882 * 9 8 6 36 36 H 1.09000 * 109.47356 * 330.21633 * 10 8 6 37 37 H 1.08994 * 109.47369 * 210.21114 * 10 8 6 38 38 H 1.09001 * 114.20096 * 332.73325 * 13 11 10 39 39 H 1.08993 * 114.20898 * 105.35690 * 13 11 10 40 40 H 1.09000 * 113.46282 * 271.50227 * 14 13 11 41 41 H 1.09001 * 113.55805 * 140.98789 * 14 13 11 42 42 H 0.97005 * 119.99855 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3278 3.0572 -0.0012 7 8 6.0152 2.0580 -0.0012 8 7 5.9075 4.2740 -0.0022 9 6 5.0771 5.4809 -0.0027 10 6 7.3679 4.3896 -0.0016 11 6 7.8765 4.4336 -1.4439 12 1 7.2727 5.0768 -2.0841 13 6 8.1375 3.0453 -2.0442 14 6 9.3543 3.7449 -2.6718 15 7 9.3204 4.6930 -1.5481 16 6 10.2312 5.4768 -0.8916 17 1 9.9054 6.1373 -0.1016 18 6 11.5726 5.4268 -1.2453 19 7 11.9697 4.6219 -2.2080 20 14 12.8140 6.5018 -0.3549 21 1 12.8118 6.1664 1.0917 22 1 14.1681 6.2628 -0.9158 23 1 12.4493 7.9302 -0.5324 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8333 0.9766 -0.8908 30 1 3.8341 0.9763 0.8891 31 1 3.4231 3.4221 0.8889 32 1 3.4224 3.4216 -0.8910 33 1 4.8203 5.7447 -1.0287 34 1 4.1648 5.2945 0.5637 35 1 5.6285 6.3015 0.4563 36 1 7.8003 3.5297 0.5100 37 1 7.6598 5.3041 0.5147 38 1 8.3877 2.2804 -1.3089 39 1 7.3862 2.7212 -2.7643 40 1 9.1400 4.2064 -3.6357 41 1 10.2511 3.1257 -2.6905 42 1 12.9072 4.5867 -2.4550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231103416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:58 Heat of formation + Delta-G solvation = -47.660007 kcal Electronic energy + Delta-G solvation = -21024.127441 eV Core-core repulsion = 17812.619679 eV Total energy + Delta-G solvation = -3211.507762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14690 -39.71384 -38.83334 -36.46279 -34.29277 -33.48480 -31.41251 -29.93716 -29.60135 -27.35592 -25.43199 -24.99188 -23.65309 -23.25770 -21.04539 -20.01184 -18.77583 -18.30342 -17.52733 -17.30315 -17.00138 -16.68985 -16.39372 -15.84657 -15.52192 -15.22374 -14.75179 -14.61967 -14.00518 -13.85692 -13.74946 -13.45193 -13.23064 -13.12638 -12.97988 -12.94580 -12.64819 -12.61466 -12.48787 -12.26808 -11.99750 -11.95589 -11.78850 -11.68125 -11.19383 -10.86845 -10.77500 -10.57546 -9.59525 -8.91615 -7.88528 -5.23675 1.45042 1.49551 1.55272 1.65789 1.91042 2.47730 2.78722 3.31281 3.44514 3.69951 3.87873 4.03584 4.06341 4.19639 4.24300 4.34079 4.35663 4.40322 4.44974 4.51513 4.54758 4.68441 4.74010 4.78331 4.85888 4.89638 4.94882 4.99623 5.02106 5.06828 5.07569 5.22225 5.30268 5.47994 5.52216 5.73587 5.93856 6.20679 6.46551 6.89636 7.21266 7.60856 8.62149 9.28891 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.003363 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.025233 B = 8322.705238 C = 8653.601849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.081 3.919 5 C -0.124 4.124 6 C 0.509 3.491 7 O -0.579 6.579 8 N -0.610 5.610 9 C 0.070 3.930 10 C 0.130 3.870 11 C 0.138 3.862 12 H 0.054 0.946 13 C -0.129 4.129 14 C 0.143 3.857 15 N -0.629 5.629 16 C -0.224 4.224 17 H 0.091 0.909 18 C -0.073 4.073 19 N -0.957 5.957 20 Si 0.982 3.018 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.274 1.274 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.019 0.981 41 H 0.038 0.962 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.571 -3.084 5.235 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.322 6.322 4 C 0.003 3.997 5 C -0.163 4.163 6 C 0.298 3.702 7 O -0.459 6.459 8 N -0.342 5.342 9 C -0.071 4.071 10 C 0.006 3.994 11 C 0.031 3.969 12 H 0.071 0.929 13 C -0.168 4.168 14 C 0.017 3.983 15 N -0.356 5.356 16 C -0.352 4.352 17 H 0.109 0.891 18 C -0.265 4.265 19 N -0.606 5.606 20 Si 0.810 3.190 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.200 1.200 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.023 -3.277 5.329 23.858 hybrid contribution 1.518 0.289 -0.027 1.546 sum -21.505 -2.988 5.302 22.349 Atomic orbital electron populations 1.21754 0.92274 1.03417 1.02962 1.22675 0.96650 0.82817 1.00684 1.87769 1.20800 1.28062 1.95616 1.22027 0.80710 0.96080 1.00840 1.21435 0.89842 0.97709 1.07310 1.20999 0.91295 0.82548 0.75349 1.90712 1.66454 1.37429 1.51298 1.47923 1.06328 1.07285 1.72691 1.22125 0.95807 0.85845 1.03338 1.21449 0.79392 1.01759 0.96806 1.22512 0.85495 0.93694 0.95238 0.92873 1.23378 0.97604 0.96116 0.99678 1.22117 0.95883 0.90224 0.90031 1.45948 1.03509 1.50734 1.35361 1.19300 0.87308 1.15891 1.12694 0.89150 1.25714 0.98902 1.01800 1.00125 1.70044 1.15043 1.42189 1.33326 0.85098 0.77533 0.78430 0.77948 1.20071 1.22361 1.19958 0.91995 0.89321 0.91914 0.93055 0.92933 0.93558 0.93390 0.85837 0.86198 0.91374 0.88093 0.90354 0.92403 0.90454 0.91573 0.90974 0.96329 0.94315 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.40 -8.20 10.34 -148.98 -1.54 -9.74 16 4 C 0.08 1.74 5.23 71.98 0.38 2.12 16 5 C -0.12 -2.33 4.67 29.85 0.14 -2.19 16 6 C 0.51 14.21 7.67 87.65 0.67 14.88 16 7 O -0.58 -21.42 14.98 -3.05 -0.05 -21.46 16 8 N -0.61 -16.42 2.87 -846.78 -2.43 -18.85 16 9 C 0.07 1.18 10.22 127.77 1.31 2.49 16 10 C 0.13 4.70 5.40 86.38 0.47 5.17 16 11 C 0.14 5.73 4.31 41.79 0.18 5.91 16 12 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 13 C -0.13 -5.55 7.46 31.01 0.23 -5.32 16 14 C 0.14 7.37 7.48 83.26 0.62 7.99 16 15 N -0.63 -33.33 3.65 -713.40 -2.60 -35.93 16 16 C -0.22 -12.65 10.55 84.04 0.89 -11.76 16 17 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.96 -59.88 11.45 21.65 0.25 -59.63 16 20 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.12 1.74 7.41 -2.38 -0.02 1.72 16 32 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.10 1.06 6.58 -2.39 -0.02 1.04 16 35 H 0.08 1.28 7.85 -2.39 -0.02 1.27 16 36 H 0.06 2.42 7.13 -2.39 -0.02 2.40 16 37 H 0.08 2.71 7.87 -2.39 -0.02 2.69 16 38 H 0.07 3.06 7.92 -2.39 -0.02 3.04 16 39 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.04 2.24 7.00 -2.39 -0.02 2.22 16 42 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -73.68 345.09 3.19 -70.49 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.97 Total: 11.04 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 6.57 Total: 15.78 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.79 Total: -114.41 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.59 Total: -31.20 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.68 3.19 -70.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231103416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.826 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds