Wall clock time and date at job start Mon Mar 30 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99602 * 2 1 4 4 H 1.08009 * 119.99723 * 203.04975 * 3 2 1 5 5 C 1.38810 * 120.00560 * 23.04317 * 3 2 1 6 6 N 1.31619 * 119.99543 * 12.93114 * 5 3 2 7 7 Si 1.86793 * 120.00278 * 192.93310 * 5 3 2 8 8 H 1.48501 * 109.47423 * 90.00048 * 7 5 3 9 9 H 1.48502 * 109.46980 * 210.00427 * 7 5 3 10 10 H 1.48501 * 109.47192 * 329.99737 * 7 5 3 11 11 C 1.46493 * 120.00174 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47380 * 89.99587 * 11 2 1 13 13 C 1.53002 * 109.47193 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.47048 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00220 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00243 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47071 * 179.97438 * 17 15 14 19 19 H 1.09002 * 110.27168 * 54.30239 * 18 17 15 20 20 C 1.54948 * 110.30860 * 176.38328 * 18 17 15 21 21 C 1.55570 * 100.82331 * 155.40581 * 20 18 17 22 22 C 1.54383 * 102.27707 * 325.88554 * 21 20 18 23 23 O 1.43244 * 107.58554 * 21.35523 * 22 21 20 24 24 H 1.09008 * 109.46760 * 275.12412 * 1 2 3 25 25 H 1.08996 * 109.47481 * 35.12097 * 1 2 3 26 26 H 1.08999 * 109.47153 * 155.12786 * 1 2 3 27 27 H 0.96999 * 119.99913 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47324 * 329.99445 * 11 2 1 29 29 H 1.09001 * 109.47197 * 209.99824 * 11 2 1 30 30 H 1.08999 * 109.47144 * 60.00203 * 12 11 2 31 31 H 1.09001 * 109.47149 * 300.00266 * 12 11 2 32 32 H 1.08999 * 109.46892 * 60.00070 * 13 12 11 33 33 H 1.09003 * 109.47149 * 299.99664 * 13 12 11 34 34 H 0.97001 * 120.00137 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.47521 * 59.99930 * 17 15 14 36 36 H 1.09001 * 109.46895 * 299.99918 * 17 15 14 37 37 H 1.08994 * 111.12809 * 273.37960 * 20 18 17 38 38 H 1.09007 * 111.12487 * 37.54752 * 20 18 17 39 39 H 1.08998 * 110.83601 * 207.68618 * 21 20 18 40 40 H 1.09000 * 111.00664 * 84.16184 * 21 20 18 41 41 H 1.08999 * 109.83394 * 261.84307 * 22 21 20 42 42 H 1.08999 * 109.83070 * 140.86386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3662 5 6 1.5387 2.3402 0.4705 6 7 0.4118 2.2598 1.1458 7 14 2.3157 4.0074 0.1454 8 1 1.7986 4.5534 -1.1351 9 1 1.9758 4.9364 1.2529 10 1 3.7907 3.8579 0.0600 11 6 2.1975 -1.2686 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2181 -3.0345 -1.4437 14 7 3.4627 -3.4565 -2.8251 15 6 4.1253 -4.6039 -3.0719 16 8 4.5195 -5.2868 -2.1504 17 6 4.3775 -5.0377 -4.4929 18 6 5.1430 -6.3625 -4.4934 19 1 4.6126 -7.1054 -3.8977 20 6 5.3336 -6.8729 -5.9440 21 6 6.5970 -7.7649 -5.7762 22 6 7.3942 -7.0049 -4.6943 23 8 6.4720 -6.1705 -3.9834 24 1 -0.3633 0.0918 1.0237 25 1 -0.3634 0.8405 -0.5912 26 1 -0.3633 -0.9323 -0.4322 27 1 -0.0154 3.0663 1.4743 28 1 1.6085 -2.0285 0.5130 29 1 3.1499 -1.1385 0.5133 30 1 3.0415 -0.9499 -1.9568 31 1 1.5000 -1.8399 -1.9571 32 1 2.6294 -3.7945 -0.9300 33 1 4.1706 -2.9038 -0.9301 34 1 3.1478 -2.9102 -3.5622 35 1 4.9670 -4.2777 -5.0057 36 1 3.4254 -5.1676 -5.0075 37 1 4.4756 -7.4611 -6.2694 38 1 5.5240 -6.0468 -6.6293 39 1 7.1606 -7.8181 -6.7076 40 1 6.3277 -8.7628 -5.4302 41 1 8.1622 -6.3904 -5.1642 42 1 7.8555 -7.7148 -4.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234360355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:49 Heat of formation + Delta-G solvation = -74.201841 kcal Electronic energy + Delta-G solvation = -20366.046924 eV Core-core repulsion = 17153.388222 eV Total energy + Delta-G solvation = -3212.658702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10301 -38.91439 -36.21769 -34.66126 -32.71109 -32.15562 -31.69768 -29.89244 -27.14691 -25.87215 -24.98250 -22.36171 -21.92787 -21.45126 -20.60059 -19.79451 -17.34592 -16.74111 -16.68888 -16.24170 -15.58959 -15.52620 -14.91462 -14.70971 -14.23166 -13.87491 -13.49235 -13.31366 -13.05609 -12.83659 -12.66372 -12.27370 -12.04458 -11.64724 -11.58636 -11.41069 -11.34112 -11.16254 -10.98644 -10.78336 -10.76210 -10.45310 -10.17356 -9.85307 -9.77330 -9.69133 -9.66807 -8.87299 -8.52408 -6.71613 -5.69588 -3.16778 2.76873 3.27914 3.39623 3.45766 3.47375 3.57918 4.12711 4.40285 4.52073 4.56946 4.75096 4.82625 4.91416 5.12337 5.22358 5.27294 5.33236 5.37925 5.43970 5.46128 5.51298 5.55213 5.66890 5.85196 5.87192 5.94397 6.15522 6.25200 6.45477 6.65851 6.77001 6.80519 6.87839 6.97435 7.39537 7.63660 7.75660 7.83100 8.36479 8.43096 9.26784 9.90397 10.39555 11.35232 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039063 B = 0.002696 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.625136 B =10384.296592 C =10691.334101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.604 5.604 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.121 3.879 14 N -0.730 5.730 15 C 0.509 3.491 16 O -0.533 6.533 17 C -0.143 4.143 18 C 0.098 3.902 19 H 0.078 0.922 20 C -0.154 4.154 21 C -0.156 4.156 22 C 0.048 3.952 23 O -0.365 6.365 24 H 0.031 0.969 25 H 0.039 0.961 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.399 0.601 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -18.106 -16.198 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.027 3.973 12 C -0.190 4.190 13 C -0.003 4.003 14 N -0.382 5.382 15 C 0.295 3.705 16 O -0.409 6.409 17 C -0.183 4.183 18 C 0.040 3.960 19 H 0.096 0.904 20 C -0.191 4.191 21 C -0.194 4.194 22 C -0.029 4.029 23 O -0.285 6.285 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.193 -18.308 -15.236 25.188 hybrid contribution 0.130 1.163 -0.767 1.399 sum 8.324 -17.145 -16.003 24.886 Atomic orbital electron populations 1.20788 0.82700 0.95278 0.99471 1.43902 1.01851 1.00712 1.86177 1.19200 0.98255 0.85630 1.35304 0.91426 1.25040 0.97961 0.98577 0.98248 1.70074 1.19493 1.27137 1.38654 0.86245 0.78770 0.84136 0.77340 1.21562 1.21753 1.20473 1.20600 0.96341 0.88453 0.91920 1.22515 0.99397 0.94320 1.02805 1.21426 1.00299 0.96821 0.81772 1.46165 1.58341 1.24016 1.09710 1.20484 0.77695 0.81068 0.91269 1.90723 1.50061 1.53865 1.46283 1.21881 1.02140 0.98795 0.95487 1.22676 0.84894 0.95556 0.92897 0.90374 1.23391 0.98583 1.00016 0.97150 1.23154 0.96712 0.99676 0.99820 1.23118 0.92772 0.93455 0.93546 1.88571 1.16242 1.64274 1.59375 0.95091 0.94186 0.98425 0.93782 0.94434 0.93280 0.91615 0.92301 0.91934 0.91747 0.76764 0.88226 0.87722 0.89701 0.90108 0.90089 0.90488 0.91508 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.98 59.85 0.54 4.58 16 2 N -0.60 -15.37 2.92 -181.12 -0.53 -15.90 16 3 C -0.25 -7.06 9.65 -15.06 -0.15 -7.20 16 4 H 0.07 1.83 7.86 -52.48 -0.41 1.42 16 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -26.88 10.71 55.49 0.59 -26.28 16 7 Si 0.90 22.03 29.57 -169.99 -5.03 17.01 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.16 3.19 5.64 -4.05 -0.02 3.17 16 12 C -0.15 -2.51 5.65 -26.73 -0.15 -2.66 16 13 C 0.12 1.82 5.67 -4.04 -0.02 1.80 16 14 N -0.73 -9.34 5.56 -60.29 -0.33 -9.68 16 15 C 0.51 6.95 7.74 -10.99 -0.09 6.87 16 16 O -0.53 -9.62 15.56 -4.45 -0.07 -9.69 16 17 C -0.14 -1.32 5.44 -27.88 -0.15 -1.47 16 18 C 0.10 0.98 2.91 -25.70 -0.07 0.90 16 19 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 20 C -0.15 -0.99 6.59 -24.34 -0.16 -1.15 16 21 C -0.16 -0.98 7.03 -24.64 -0.17 -1.15 16 22 C 0.05 0.42 7.80 37.88 0.30 0.72 16 23 O -0.37 -4.66 10.50 -45.24 -0.47 -5.13 16 24 H 0.03 0.84 7.34 -51.92 -0.38 0.45 16 25 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 26 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -34.15 343.39 -8.30 -42.46 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.39 Total: -2.26 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.24 Total: 4.31 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.27 Total: -51.86 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.54 Total: -14.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.15 -8.30 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234360355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.746 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds