Wall clock time and date at job start Mon Mar 30 2020 01:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99602 * 2 1 4 4 H 1.08009 * 119.99723 * 203.04975 * 3 2 1 5 5 C 1.38810 * 120.00560 * 23.04317 * 3 2 1 6 6 N 1.31619 * 119.99543 * 12.93114 * 5 3 2 7 7 Si 1.86793 * 120.00278 * 192.93310 * 5 3 2 8 8 H 1.48501 * 109.47423 * 90.00048 * 7 5 3 9 9 H 1.48502 * 109.46980 * 210.00427 * 7 5 3 10 10 H 1.48501 * 109.47192 * 329.99737 * 7 5 3 11 11 C 1.46493 * 120.00174 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47380 * 89.99587 * 11 2 1 13 13 C 1.53002 * 109.47193 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.47048 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00220 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00243 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47071 * 179.97438 * 17 15 14 19 19 H 1.09002 * 110.27168 * 54.30239 * 18 17 15 20 20 C 1.54948 * 110.30860 * 176.38328 * 18 17 15 21 21 C 1.55570 * 100.82331 * 155.40581 * 20 18 17 22 22 C 1.54383 * 102.27707 * 325.88554 * 21 20 18 23 23 O 1.43244 * 107.58554 * 21.35523 * 22 21 20 24 24 H 1.09008 * 109.46760 * 275.12412 * 1 2 3 25 25 H 1.08996 * 109.47481 * 35.12097 * 1 2 3 26 26 H 1.08999 * 109.47153 * 155.12786 * 1 2 3 27 27 H 0.96999 * 119.99913 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47324 * 329.99445 * 11 2 1 29 29 H 1.09001 * 109.47197 * 209.99824 * 11 2 1 30 30 H 1.08999 * 109.47144 * 60.00203 * 12 11 2 31 31 H 1.09001 * 109.47149 * 300.00266 * 12 11 2 32 32 H 1.08999 * 109.46892 * 60.00070 * 13 12 11 33 33 H 1.09003 * 109.47149 * 299.99664 * 13 12 11 34 34 H 0.97001 * 120.00137 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.47521 * 59.99930 * 17 15 14 36 36 H 1.09001 * 109.46895 * 299.99918 * 17 15 14 37 37 H 1.08994 * 111.12809 * 273.37960 * 20 18 17 38 38 H 1.09007 * 111.12487 * 37.54752 * 20 18 17 39 39 H 1.08998 * 110.83601 * 207.68618 * 21 20 18 40 40 H 1.09000 * 111.00664 * 84.16184 * 21 20 18 41 41 H 1.08999 * 109.83394 * 261.84307 * 22 21 20 42 42 H 1.08999 * 109.83070 * 140.86386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3662 5 6 1.5387 2.3402 0.4705 6 7 0.4118 2.2598 1.1458 7 14 2.3157 4.0074 0.1454 8 1 1.7986 4.5534 -1.1351 9 1 1.9758 4.9364 1.2529 10 1 3.7907 3.8579 0.0600 11 6 2.1975 -1.2686 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2181 -3.0345 -1.4437 14 7 3.4627 -3.4565 -2.8251 15 6 4.1253 -4.6039 -3.0719 16 8 4.5195 -5.2868 -2.1504 17 6 4.3775 -5.0377 -4.4929 18 6 5.1430 -6.3625 -4.4934 19 1 4.6126 -7.1054 -3.8977 20 6 5.3336 -6.8729 -5.9440 21 6 6.5970 -7.7649 -5.7762 22 6 7.3942 -7.0049 -4.6943 23 8 6.4720 -6.1705 -3.9834 24 1 -0.3633 0.0918 1.0237 25 1 -0.3634 0.8405 -0.5912 26 1 -0.3633 -0.9323 -0.4322 27 1 -0.0154 3.0663 1.4743 28 1 1.6085 -2.0285 0.5130 29 1 3.1499 -1.1385 0.5133 30 1 3.0415 -0.9499 -1.9568 31 1 1.5000 -1.8399 -1.9571 32 1 2.6294 -3.7945 -0.9300 33 1 4.1706 -2.9038 -0.9301 34 1 3.1478 -2.9102 -3.5622 35 1 4.9670 -4.2777 -5.0057 36 1 3.4254 -5.1676 -5.0075 37 1 4.4756 -7.4611 -6.2694 38 1 5.5240 -6.0468 -6.6293 39 1 7.1606 -7.8181 -6.7076 40 1 6.3277 -8.7628 -5.4302 41 1 8.1622 -6.3904 -5.1642 42 1 7.8555 -7.7148 -4.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234360355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:48 Heat of formation + Delta-G solvation = -97.505473 kcal Electronic energy + Delta-G solvation = -20367.057446 eV Core-core repulsion = 17153.388222 eV Total energy + Delta-G solvation = -3213.669224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00732 -39.82611 -37.94520 -36.12242 -33.86432 -33.31387 -32.65002 -31.49358 -28.15463 -27.84470 -26.43817 -23.73024 -22.70544 -22.28646 -22.10887 -20.99169 -18.72729 -18.15079 -17.62495 -17.28937 -16.77214 -16.66513 -16.39469 -15.83994 -15.41112 -15.35572 -14.74757 -14.66987 -14.50865 -14.08386 -13.66963 -13.41768 -13.11341 -12.90027 -12.77428 -12.62915 -12.58516 -12.48922 -12.28897 -12.13759 -12.09083 -12.06591 -11.83528 -11.65637 -11.48260 -10.85812 -10.61924 -10.43721 -10.03763 -8.77734 -7.82138 -5.32082 1.47351 1.47883 1.57214 1.72813 2.25738 2.52339 2.92993 3.30922 3.58116 3.66104 3.77050 3.93182 4.03523 4.11898 4.21106 4.27583 4.33144 4.47878 4.53936 4.64738 4.67104 4.71724 4.82846 4.85402 4.86625 4.92883 4.95684 5.03276 5.07959 5.26088 5.29557 5.30057 5.48508 5.52818 5.63827 5.71690 6.19594 6.33649 6.63707 7.15889 7.34286 7.87908 8.31626 9.21002 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039063 B = 0.002696 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.625136 B =10384.296592 C =10691.334101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.622 5.622 3 C -0.262 4.262 4 H 0.071 0.929 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.269 1.269 11 C 0.149 3.851 12 C -0.125 4.125 13 C 0.132 3.868 14 N -0.722 5.722 15 C 0.503 3.497 16 O -0.584 6.584 17 C -0.134 4.134 18 C 0.086 3.914 19 H 0.057 0.943 20 C -0.142 4.142 21 C -0.151 4.151 22 C 0.037 3.963 23 O -0.406 6.406 24 H 0.003 0.997 25 H 0.016 0.984 26 H 0.034 0.966 27 H 0.248 0.752 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.415 0.585 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -18.659 -18.890 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.211 1.211 9 H -0.223 1.223 10 H -0.193 1.193 11 C 0.023 3.977 12 C -0.166 4.166 13 C 0.007 3.993 14 N -0.374 5.374 15 C 0.291 3.709 16 O -0.464 6.464 17 C -0.173 4.173 18 C 0.029 3.971 19 H 0.075 0.925 20 C -0.180 4.180 21 C -0.188 4.188 22 C -0.040 4.040 23 O -0.326 6.326 24 H 0.021 0.979 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.251 0.749 35 H 0.135 0.865 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.675 -18.879 -17.978 27.475 hybrid contribution 0.020 1.251 0.113 1.256 sum 8.695 -17.628 -17.866 26.562 Atomic orbital electron populations 1.20550 0.82749 0.96047 0.97613 1.44169 1.02200 1.01721 1.86428 1.19528 0.98475 0.86754 1.34414 0.91143 1.25842 0.98741 1.02064 0.98555 1.70242 1.20932 1.27614 1.40007 0.85211 0.78380 0.79663 0.76866 1.21064 1.22268 1.19348 1.20777 0.95600 0.86925 0.94408 1.22135 0.99925 0.94736 0.99793 1.21115 0.99188 0.95786 0.83241 1.46038 1.58067 1.24164 1.09154 1.21334 0.76415 0.80331 0.92778 1.90703 1.52071 1.55356 1.48257 1.21962 1.04153 0.98762 0.92436 1.22826 0.83831 0.95605 0.94853 0.92499 1.23375 0.99267 1.00576 0.94753 1.23162 0.96542 0.99368 0.99745 1.23310 0.92886 0.93575 0.94193 1.88531 1.17819 1.65225 1.61027 0.97912 0.96548 0.94800 0.94288 0.93317 0.94120 0.92255 0.91367 0.92207 0.93227 0.74890 0.86481 0.84021 0.87734 0.88665 0.87953 0.90239 0.90704 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 8.98 127.77 1.15 9.88 16 2 N -0.62 -31.45 2.92 -726.95 -2.12 -33.58 16 3 C -0.26 -14.47 9.65 84.03 0.81 -13.65 16 4 H 0.07 3.78 7.86 -2.91 -0.02 3.75 16 5 C -0.06 -3.25 5.10 84.86 0.43 -2.81 16 6 N -0.94 -56.54 10.71 21.65 0.23 -56.31 16 7 Si 0.97 45.37 29.57 68.60 2.03 47.40 16 8 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 9 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 C 0.15 6.04 5.64 86.38 0.49 6.52 16 12 C -0.13 -4.01 5.65 30.59 0.17 -3.84 16 13 C 0.13 3.82 5.67 86.38 0.49 4.31 16 14 N -0.72 -17.12 5.56 -463.06 -2.57 -19.69 16 15 C 0.50 13.14 7.74 87.66 0.68 13.82 16 16 O -0.58 -21.28 15.56 6.52 0.10 -21.18 16 17 C -0.13 -2.12 5.44 29.85 0.16 -1.96 16 18 C 0.09 1.61 2.91 31.26 0.09 1.70 16 19 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 20 C -0.14 -1.40 6.59 32.15 0.21 -1.18 16 21 C -0.15 -1.55 7.03 31.95 0.22 -1.32 16 22 C 0.04 0.62 7.80 72.45 0.56 1.18 16 23 O -0.41 -10.25 10.50 -139.41 -1.46 -11.71 16 24 H 0.00 0.14 7.34 -2.38 -0.02 0.12 16 25 H 0.02 0.85 7.34 -2.39 -0.02 0.84 16 26 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 27 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 29 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.41 7.21 8.47 -92.71 -0.79 6.43 16 35 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.69 8.06 -2.38 -0.02 0.67 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.39 343.39 1.87 -73.52 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.20 Total: 8.91 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.47 Total: 12.64 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.46 Total: -109.58 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.36 Total: -32.90 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -75.39 1.87 -73.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234360355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.988 kcal (2) G-P(sol) polarization free energy of solvation -75.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds