Wall clock time and date at job start Mon Mar 30 2020 01:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42900 * 109.46614 * 2 1 4 4 C 1.42904 * 113.99767 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.54845 * 355.66112 * 4 3 2 6 6 C 1.52992 * 117.50038 * 141.37922 * 4 3 2 7 7 C 1.52995 * 60.00265 * 107.48545 * 6 4 3 8 8 H 1.09001 * 117.51954 * 107.48085 * 7 6 4 9 9 C 1.50706 * 117.50036 * 252.50800 * 7 6 4 10 10 O 1.21281 * 119.99681 * 68.61911 * 9 7 6 11 11 N 1.34772 * 120.00105 * 248.62466 * 9 7 6 12 12 C 1.46496 * 119.99741 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.46897 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47004 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46703 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00121 * 269.99831 * 15 14 13 17 17 C 1.36938 * 119.99943 * 90.00763 * 15 14 13 18 18 H 1.08004 * 119.99801 * 340.08491 * 17 15 14 19 19 C 1.38812 * 120.00299 * 160.08370 * 17 15 14 20 20 N 1.31623 * 120.00019 * 344.12520 * 19 17 15 21 21 Si 1.86795 * 120.00153 * 164.11971 * 19 17 15 22 22 H 1.48503 * 109.47289 * 265.42352 * 21 19 17 23 23 H 1.48503 * 109.46826 * 25.41921 * 21 19 17 24 24 H 1.48501 * 109.47395 * 145.41776 * 21 19 17 25 25 H 1.08995 * 109.46770 * 299.99618 * 1 2 3 26 26 H 1.08999 * 109.47159 * 60.00458 * 1 2 3 27 27 H 1.09001 * 109.46430 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47058 * 240.00305 * 2 1 3 29 29 H 1.08999 * 109.47159 * 119.99542 * 2 1 3 30 30 H 1.09001 * 117.49926 * 359.97438 * 6 4 3 31 31 H 1.09000 * 117.49696 * 214.97421 * 6 4 3 32 32 H 0.97000 * 120.00324 * 359.97438 * 11 9 7 33 33 H 1.08992 * 109.47880 * 59.99800 * 12 11 9 34 34 H 1.09003 * 109.46946 * 299.99182 * 12 11 9 35 35 H 1.09003 * 109.47167 * 59.99708 * 13 12 11 36 36 H 1.08994 * 109.47015 * 299.99686 * 13 12 11 37 37 H 1.08997 * 109.46569 * 60.00175 * 14 13 12 38 38 H 1.08997 * 109.47166 * 300.00423 * 14 13 12 39 39 H 1.08996 * 109.47395 * 265.44346 * 16 15 14 40 40 H 1.08994 * 109.47102 * 25.45148 * 16 15 14 41 41 H 1.09004 * 109.46936 * 145.45120 * 16 15 14 42 42 H 0.97000 * 119.99977 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 0.0734 6 6 4.0510 2.5731 -0.8477 7 6 4.0425 2.6876 0.6779 8 1 4.9910 2.5547 1.1983 9 6 3.0965 3.6850 1.2957 10 8 1.8993 3.4982 1.2432 11 7 3.5809 4.7844 1.9063 12 6 2.6613 5.7536 2.5072 13 6 3.4627 6.8986 3.1301 14 6 2.5022 7.9112 3.7572 15 7 3.2696 9.0072 4.3540 16 6 3.7030 8.9221 5.7509 17 6 3.5816 10.1111 3.6063 18 1 3.5595 10.0568 2.5279 19 6 3.9262 11.3001 4.2344 20 7 3.6586 11.4713 5.5117 21 14 4.7699 12.6571 3.2669 22 1 6.2410 12.5438 3.4351 23 1 4.4247 12.5274 1.8284 24 1 4.3147 13.9788 3.7680 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3724 3.2189 -1.4050 31 1 5.0053 2.3650 -1.3314 32 1 4.5384 4.9337 1.9486 33 1 2.0696 5.2626 3.2797 34 1 1.9980 6.1501 1.7385 35 1 4.0547 7.3899 2.3579 36 1 4.1257 6.5019 3.8989 37 1 1.9100 7.4202 4.5293 38 1 1.8394 8.3079 2.9881 39 1 2.9742 9.4225 6.3885 40 1 3.7835 7.8752 6.0432 41 1 4.6738 9.4056 5.8601 42 1 3.8997 12.3020 5.9507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234467770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:51 Heat of formation + Delta-G solvation = -36.181638 kcal Electronic energy + Delta-G solvation = -20322.253975 eV Core-core repulsion = 17111.243952 eV Total energy + Delta-G solvation = -3211.010023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97482 -38.12985 -36.23942 -35.28712 -34.56919 -31.95806 -30.93969 -29.91578 -26.16279 -25.67894 -23.74644 -23.06129 -22.37549 -21.68010 -20.56254 -19.69227 -17.84185 -16.70248 -16.13084 -15.93144 -15.70551 -15.31839 -15.04846 -14.64260 -14.12292 -13.79030 -13.42216 -12.99534 -12.88295 -12.83365 -12.62374 -12.56676 -12.31842 -11.67285 -11.39133 -11.37749 -11.18821 -10.99173 -10.79519 -10.77458 -10.66920 -10.44074 -10.15891 -9.83502 -9.77759 -9.66898 -9.26916 -8.82576 -8.50998 -6.75212 -5.70181 -3.13362 2.59514 3.21655 3.33230 3.39911 3.46295 3.48006 3.68578 4.49367 4.52779 4.57064 4.70243 4.86670 4.94730 5.07495 5.13508 5.14344 5.28691 5.42086 5.46212 5.51552 5.53653 5.71694 5.72767 5.87891 5.94822 5.97250 6.15524 6.26248 6.45512 6.69178 6.76998 6.80539 6.97266 7.08445 7.40946 7.69260 7.73966 7.83675 8.41207 8.44108 9.26365 9.90918 10.38902 11.35397 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.002804 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.464846 B = 9984.752155 C =10326.860528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.324 6.324 4 C 0.050 3.950 5 H 0.116 0.884 6 C -0.161 4.161 7 C -0.196 4.196 8 H 0.127 0.873 9 C 0.535 3.465 10 O -0.518 6.518 11 N -0.728 5.728 12 C 0.122 3.878 13 C -0.149 4.149 14 C 0.155 3.845 15 N -0.604 5.604 16 C 0.163 3.837 17 C -0.253 4.253 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.908 5.908 21 Si 0.904 3.096 22 H -0.289 1.289 23 H -0.279 1.279 24 H -0.292 1.292 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.398 0.602 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.049 0.951 39 H 0.028 0.972 40 H -0.003 1.003 41 H 0.042 0.958 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -22.691 -10.293 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.241 6.241 4 C -0.010 4.010 5 H 0.134 0.866 6 C -0.199 4.199 7 C -0.218 4.218 8 H 0.144 0.856 9 C 0.320 3.680 10 O -0.393 6.393 11 N -0.380 5.380 12 C -0.002 4.002 13 C -0.190 4.190 14 C 0.027 3.973 15 N -0.327 5.327 16 C 0.018 3.982 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.200 4.200 20 N -0.553 5.553 21 Si 0.734 3.266 22 H -0.216 1.216 23 H -0.205 1.205 24 H -0.218 1.218 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.232 0.768 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.454 -22.485 -10.188 24.689 hybrid contribution 1.323 0.751 -0.321 1.555 sum 1.777 -21.733 -10.509 24.206 Atomic orbital electron populations 1.21708 0.93561 1.01877 1.03579 1.22543 0.95956 0.84009 0.99632 1.88192 1.16992 1.25362 1.93553 1.22526 0.83665 0.92898 1.01903 0.86634 1.23415 1.02976 1.02457 0.91035 1.22797 1.01417 1.00323 0.97236 0.85561 1.19481 0.88596 0.81461 0.78508 1.90754 1.15437 1.75521 1.57603 1.46108 1.10706 1.22981 1.58166 1.21411 0.92487 0.89110 0.97156 1.22516 1.00334 0.95738 1.00441 1.20592 0.91918 0.88707 0.96062 1.43937 1.61956 1.16887 1.09909 1.20782 0.99401 0.93507 0.84508 1.19227 1.40624 0.88258 0.90155 0.91280 1.24960 1.01612 0.97145 0.96261 1.70108 1.49617 1.25537 1.10085 0.86243 0.79528 0.81536 0.79300 1.21618 1.20464 1.21820 0.91506 0.91869 0.91299 0.93576 0.93472 0.87587 0.87191 0.76802 0.91973 0.91821 0.91584 0.92290 0.94419 0.93306 0.95339 0.98416 0.93876 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.50 6.53 37.16 0.24 0.75 16 3 O -0.32 -4.12 8.48 -57.36 -0.49 -4.61 16 4 C 0.05 0.48 6.40 -26.74 -0.17 0.31 16 5 H 0.12 0.75 7.93 -51.93 -0.41 0.34 16 6 C -0.16 -1.41 10.18 -26.74 -0.27 -1.68 16 7 C -0.20 -1.98 6.19 -91.77 -0.57 -2.55 16 8 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 9 C 0.53 7.64 7.61 -10.98 -0.08 7.56 16 10 O -0.52 -9.53 14.92 -16.57 -0.25 -9.77 16 11 N -0.73 -9.66 5.56 -60.29 -0.33 -10.00 16 12 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 13 C -0.15 -2.53 5.65 -26.72 -0.15 -2.69 16 14 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 15 N -0.60 -15.41 2.93 -181.12 -0.53 -15.94 16 16 C 0.16 4.07 8.98 59.85 0.54 4.61 16 17 C -0.25 -7.03 9.67 -15.06 -0.15 -7.18 16 18 H 0.07 1.87 7.88 -52.48 -0.41 1.46 16 19 C 0.00 -0.05 5.04 -17.43 -0.09 -0.14 16 20 N -0.91 -26.90 10.70 55.49 0.59 -26.31 16 21 Si 0.90 22.05 29.58 -169.99 -5.03 17.02 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 4.31 8.47 -40.82 -0.35 3.96 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.03 0.77 7.44 -51.93 -0.39 0.38 16 40 H 0.00 -0.06 8.04 -51.93 -0.42 -0.48 16 41 H 0.04 1.15 7.17 -51.93 -0.37 0.78 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -33.98 350.40 -8.51 -42.49 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.39 Total: -1.25 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.36 Total: 3.09 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.27 Total: -52.25 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.73 Total: -14.38 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.98 -8.51 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234467770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.310 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds