Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42900 * 109.46614 * 2 1 4 4 C 1.42904 * 113.99767 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.54845 * 355.66112 * 4 3 2 6 6 C 1.52992 * 117.50038 * 141.37922 * 4 3 2 7 7 C 1.52995 * 60.00265 * 107.48545 * 6 4 3 8 8 H 1.09001 * 117.51954 * 107.48085 * 7 6 4 9 9 C 1.50706 * 117.50036 * 252.50800 * 7 6 4 10 10 O 1.21281 * 119.99681 * 68.61911 * 9 7 6 11 11 N 1.34772 * 120.00105 * 248.62466 * 9 7 6 12 12 C 1.46496 * 119.99741 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.46897 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47004 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46703 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00121 * 269.99831 * 15 14 13 17 17 C 1.36938 * 119.99943 * 90.00763 * 15 14 13 18 18 H 1.08004 * 119.99801 * 340.08491 * 17 15 14 19 19 C 1.38812 * 120.00299 * 160.08370 * 17 15 14 20 20 N 1.31623 * 120.00019 * 344.12520 * 19 17 15 21 21 Si 1.86795 * 120.00153 * 164.11971 * 19 17 15 22 22 H 1.48503 * 109.47289 * 265.42352 * 21 19 17 23 23 H 1.48503 * 109.46826 * 25.41921 * 21 19 17 24 24 H 1.48501 * 109.47395 * 145.41776 * 21 19 17 25 25 H 1.08995 * 109.46770 * 299.99618 * 1 2 3 26 26 H 1.08999 * 109.47159 * 60.00458 * 1 2 3 27 27 H 1.09001 * 109.46430 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47058 * 240.00305 * 2 1 3 29 29 H 1.08999 * 109.47159 * 119.99542 * 2 1 3 30 30 H 1.09001 * 117.49926 * 359.97438 * 6 4 3 31 31 H 1.09000 * 117.49696 * 214.97421 * 6 4 3 32 32 H 0.97000 * 120.00324 * 359.97438 * 11 9 7 33 33 H 1.08992 * 109.47880 * 59.99800 * 12 11 9 34 34 H 1.09003 * 109.46946 * 299.99182 * 12 11 9 35 35 H 1.09003 * 109.47167 * 59.99708 * 13 12 11 36 36 H 1.08994 * 109.47015 * 299.99686 * 13 12 11 37 37 H 1.08997 * 109.46569 * 60.00175 * 14 13 12 38 38 H 1.08997 * 109.47166 * 300.00423 * 14 13 12 39 39 H 1.08996 * 109.47395 * 265.44346 * 16 15 14 40 40 H 1.08994 * 109.47102 * 25.45148 * 16 15 14 41 41 H 1.09004 * 109.46936 * 145.45120 * 16 15 14 42 42 H 0.97000 * 119.99977 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 0.0734 6 6 4.0510 2.5731 -0.8477 7 6 4.0425 2.6876 0.6779 8 1 4.9910 2.5547 1.1983 9 6 3.0965 3.6850 1.2957 10 8 1.8993 3.4982 1.2432 11 7 3.5809 4.7844 1.9063 12 6 2.6613 5.7536 2.5072 13 6 3.4627 6.8986 3.1301 14 6 2.5022 7.9112 3.7572 15 7 3.2696 9.0072 4.3540 16 6 3.7030 8.9221 5.7509 17 6 3.5816 10.1111 3.6063 18 1 3.5595 10.0568 2.5279 19 6 3.9262 11.3001 4.2344 20 7 3.6586 11.4713 5.5117 21 14 4.7699 12.6571 3.2669 22 1 6.2410 12.5438 3.4351 23 1 4.4247 12.5274 1.8284 24 1 4.3147 13.9788 3.7680 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3724 3.2189 -1.4050 31 1 5.0053 2.3650 -1.3314 32 1 4.5384 4.9337 1.9486 33 1 2.0696 5.2626 3.2797 34 1 1.9980 6.1501 1.7385 35 1 4.0547 7.3899 2.3579 36 1 4.1257 6.5019 3.8989 37 1 1.9100 7.4202 4.5293 38 1 1.8394 8.3079 2.9881 39 1 2.9742 9.4225 6.3885 40 1 3.7835 7.8752 6.0432 41 1 4.6738 9.4056 5.8601 42 1 3.8997 12.3020 5.9507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234467770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = -58.201314 kcal Electronic energy + Delta-G solvation = -20323.208820 eV Core-core repulsion = 17111.243952 eV Total energy + Delta-G solvation = -3211.964868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97115 -39.02803 -37.93369 -36.26313 -35.87742 -33.74554 -31.79895 -31.49268 -27.99833 -27.38994 -25.02250 -23.74090 -23.26072 -22.95247 -22.14171 -20.86336 -18.75838 -18.69047 -17.29154 -16.90554 -16.72694 -16.53839 -16.38249 -15.86125 -15.56473 -15.10951 -14.91416 -14.57134 -14.47703 -13.91329 -13.55714 -13.37647 -13.27104 -13.02366 -13.00347 -12.80541 -12.65159 -12.48996 -12.28198 -12.09329 -12.07270 -11.86591 -11.81917 -11.50509 -11.39264 -10.80516 -10.61145 -10.03947 -10.00196 -8.81942 -7.83214 -5.29089 1.47186 1.47838 1.57498 1.59037 2.21398 2.52293 2.63805 2.91791 3.29840 3.64974 3.79776 3.85578 3.96861 4.11086 4.17797 4.21345 4.31373 4.42896 4.47188 4.51488 4.52118 4.64371 4.79172 4.84011 4.85454 4.90324 4.93581 5.03464 5.05616 5.25923 5.27295 5.28448 5.48437 5.53196 5.62030 5.70848 6.31756 6.42059 6.66391 7.14869 7.37500 7.87641 8.30509 9.20895 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.002804 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.464846 B = 9984.752155 C =10326.860528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.366 6.366 4 C 0.041 3.959 5 H 0.153 0.847 6 C -0.150 4.150 7 C -0.204 4.204 8 H 0.162 0.838 9 C 0.527 3.473 10 O -0.567 6.567 11 N -0.720 5.720 12 C 0.134 3.866 13 C -0.125 4.125 14 C 0.150 3.850 15 N -0.622 5.622 16 C 0.176 3.824 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.059 4.059 20 N -0.941 5.941 21 Si 0.970 3.030 22 H -0.285 1.285 23 H -0.268 1.268 24 H -0.296 1.296 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.413 0.587 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.001 0.999 40 H 0.033 0.967 41 H 0.018 0.982 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -24.505 -11.638 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.284 6.284 4 C -0.018 4.018 5 H 0.170 0.830 6 C -0.187 4.187 7 C -0.225 4.225 8 H 0.179 0.821 9 C 0.314 3.686 10 O -0.445 6.445 11 N -0.372 5.372 12 C 0.009 3.991 13 C -0.166 4.166 14 C 0.024 3.976 15 N -0.345 5.345 16 C 0.031 3.969 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.253 4.253 20 N -0.588 5.588 21 Si 0.798 3.202 22 H -0.212 1.212 23 H -0.192 1.192 24 H -0.223 1.223 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.249 0.751 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.217 -24.332 -11.560 27.029 hybrid contribution 0.708 1.254 0.086 1.442 sum 2.924 -23.078 -11.474 25.938 Atomic orbital electron populations 1.21744 0.93974 1.03094 1.01936 1.22725 0.95783 0.83014 1.01118 1.88147 1.19036 1.27444 1.93786 1.22969 0.82800 0.94295 1.01748 0.83031 1.23494 1.03986 1.01380 0.89884 1.22882 1.01812 0.99561 0.98205 0.82092 1.20272 0.88723 0.81817 0.77752 1.90735 1.17785 1.76617 1.59398 1.45991 1.11189 1.22394 1.57643 1.21102 0.92366 0.88970 0.96668 1.22137 0.99256 0.95040 1.00140 1.20768 0.92404 0.88278 0.96200 1.44203 1.62729 1.17596 1.10004 1.20543 0.97189 0.94955 0.84223 1.19555 1.39846 0.89036 0.90607 0.90982 1.25767 1.02699 0.99573 0.97300 1.70270 1.50988 1.25966 1.11608 0.85204 0.78282 0.78275 0.78425 1.21230 1.19239 1.22328 0.93797 0.92802 0.88649 0.91354 0.92488 0.90066 0.83488 0.75091 0.92410 0.93065 0.92182 0.91528 0.93338 0.93988 0.98101 0.94877 0.96272 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.05 0.83 6.53 71.98 0.47 1.30 16 3 O -0.37 -9.05 8.48 -127.82 -1.08 -10.13 16 4 C 0.04 0.68 6.40 30.59 0.20 0.88 16 5 H 0.15 1.35 7.93 -2.39 -0.02 1.33 16 6 C -0.15 -2.23 10.18 30.59 0.31 -1.92 16 7 C -0.20 -3.58 6.19 -11.54 -0.07 -3.65 16 8 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 9 C 0.53 14.54 7.61 87.66 0.67 15.21 16 10 O -0.57 -21.09 14.92 18.13 0.27 -20.82 16 11 N -0.72 -18.03 5.56 -463.06 -2.57 -20.60 16 12 C 0.13 3.97 5.67 86.38 0.49 4.46 16 13 C -0.13 -4.07 5.65 30.60 0.17 -3.90 16 14 C 0.15 6.09 5.65 86.38 0.49 6.57 16 15 N -0.62 -31.57 2.93 -726.95 -2.13 -33.70 16 16 C 0.18 8.81 8.98 127.77 1.15 9.96 16 17 C -0.26 -14.42 9.67 84.03 0.81 -13.61 16 18 H 0.07 3.87 7.88 -2.91 -0.02 3.84 16 19 C -0.06 -3.34 5.04 84.86 0.43 -2.91 16 20 N -0.94 -56.65 10.70 21.65 0.23 -56.42 16 21 Si 0.97 45.43 29.58 68.60 2.03 47.45 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.15 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.41 7.92 8.47 -92.71 -0.79 7.13 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 39 H 0.00 0.04 7.44 -2.39 -0.02 0.02 16 40 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 41 H 0.02 1.01 7.17 -2.38 -0.02 1.00 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -75.11 350.40 2.80 -72.32 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.20 Total: 11.33 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.85 Total: 10.57 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.47 Total: -110.71 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.81 Total: -30.95 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -75.11 2.80 -72.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234467770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.115 kcal (2) G-P(sol) polarization free energy of solvation -75.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds