Wall clock time and date at job start Mon Mar 30 2020 01:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.46826 * 2 1 4 4 C 1.42905 * 113.99851 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.54719 * 4.33346 * 4 3 2 6 6 C 1.53000 * 117.49693 * 218.62273 * 4 3 2 7 7 C 1.52994 * 117.49761 * 149.99724 * 4 3 2 8 8 H 1.08998 * 117.50070 * 214.99980 * 7 4 3 9 9 C 1.50698 * 117.50217 * 0.02562 * 7 4 3 10 10 O 1.21288 * 119.99658 * 359.97438 * 9 7 4 11 11 N 1.34778 * 120.00637 * 179.97438 * 9 7 4 12 12 C 1.46498 * 120.00245 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46801 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46956 * 180.02562 * 13 12 11 15 15 N 1.46493 * 109.47469 * 180.02562 * 14 13 12 16 16 C 1.46503 * 120.00288 * 270.00580 * 15 14 13 17 17 C 1.36940 * 120.00298 * 89.99774 * 15 14 13 18 18 H 1.08003 * 119.99558 * 20.36533 * 17 15 14 19 19 C 1.38806 * 120.00357 * 200.36770 * 17 15 14 20 20 N 1.31626 * 119.99966 * 14.98889 * 19 17 15 21 21 Si 1.86798 * 120.00070 * 194.98761 * 19 17 15 22 22 H 1.48499 * 109.47440 * 85.00244 * 21 19 17 23 23 H 1.48501 * 109.47212 * 205.00131 * 21 19 17 24 24 H 1.48498 * 109.47071 * 325.00106 * 21 19 17 25 25 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47393 * 299.99881 * 1 2 3 27 27 H 1.09004 * 109.47397 * 60.00177 * 1 2 3 28 28 H 1.08998 * 109.47393 * 240.00119 * 2 1 3 29 29 H 1.08999 * 109.46970 * 119.99761 * 2 1 3 30 30 H 1.08993 * 117.49644 * 0.02562 * 6 4 3 31 31 H 1.09000 * 117.49401 * 145.01975 * 6 4 3 32 32 H 0.97001 * 119.99377 * 359.97438 * 11 9 7 33 33 H 1.08989 * 109.47240 * 300.00077 * 12 11 9 34 34 H 1.09006 * 109.46878 * 60.00333 * 12 11 9 35 35 H 1.08996 * 109.47203 * 299.99952 * 13 12 11 36 36 H 1.08998 * 109.46911 * 60.00316 * 13 12 11 37 37 H 1.09006 * 109.47079 * 300.00552 * 14 13 12 38 38 H 1.09003 * 109.47436 * 60.00116 * 14 13 12 39 39 H 1.08994 * 109.47592 * 95.08676 * 16 15 14 40 40 H 1.08994 * 109.47360 * 215.09306 * 16 15 14 41 41 H 1.09000 * 109.46441 * 335.09190 * 16 15 14 42 42 H 0.97006 * 119.99491 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9769 0.5198 -0.0734 6 6 4.0509 2.5732 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 4.9910 2.5546 -1.1982 9 6 3.0966 3.6851 -1.2953 10 8 1.8993 3.4984 -1.2428 11 7 3.5810 4.7849 -1.9056 12 6 2.6614 5.7544 -2.5061 13 6 3.4627 6.9001 -3.1275 14 6 2.5024 7.9129 -3.7541 15 7 3.2696 9.0097 -4.3496 16 6 3.6028 10.1901 -3.5484 17 6 3.6755 8.9316 -5.6551 18 1 3.1783 8.2562 -6.3356 19 6 4.7258 9.7203 -6.1038 20 7 5.5188 10.3152 -5.2379 21 14 5.0140 9.9376 -7.9366 22 1 4.1573 11.0388 -8.4453 23 1 6.4413 10.2694 -8.1774 24 1 4.6725 8.6775 -8.6442 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3723 3.2189 1.4050 31 1 5.0052 2.3649 1.3316 32 1 4.5385 4.9344 -1.9471 33 1 2.0697 5.2635 -3.2787 34 1 1.9981 6.1506 -1.7372 35 1 4.0541 7.3908 -2.3545 36 1 4.1263 6.5042 -3.8963 37 1 1.9105 7.4224 -4.5270 38 1 1.8391 8.3088 -2.9850 39 1 4.5996 10.0715 -3.1238 40 1 3.5807 11.0770 -4.1815 41 1 2.8758 10.2999 -2.7437 42 1 6.2526 10.8667 -5.5515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234467775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:55 Heat of formation + Delta-G solvation = -36.439374 kcal Electronic energy + Delta-G solvation = -20383.098617 eV Core-core repulsion = 17172.077418 eV Total energy + Delta-G solvation = -3211.021199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92799 -38.08903 -36.20432 -35.25636 -34.52699 -31.91071 -30.91908 -29.91381 -26.13997 -25.67357 -23.70690 -23.03889 -22.34346 -21.62186 -20.53264 -19.65246 -17.79863 -16.73374 -16.07041 -15.88355 -15.68058 -15.31017 -14.97249 -14.54740 -14.12404 -13.78133 -13.34342 -13.10903 -12.87763 -12.77828 -12.57982 -12.53572 -12.28876 -11.59998 -11.36135 -11.28689 -11.15189 -11.02646 -10.81910 -10.71484 -10.64075 -10.44428 -10.06782 -9.88202 -9.74554 -9.61356 -9.23154 -8.76629 -8.52546 -6.76946 -5.71013 -3.14431 2.64025 3.26003 3.37300 3.40484 3.46137 3.46981 3.72398 4.51845 4.54078 4.60858 4.73560 4.88817 4.98948 5.12133 5.15789 5.17398 5.33326 5.44315 5.47601 5.55474 5.59834 5.73635 5.75570 5.92418 5.98739 6.00896 6.18431 6.32506 6.48269 6.73104 6.79496 6.87276 7.04975 7.11312 7.39999 7.73762 7.75933 7.82954 8.40959 8.49126 9.25622 9.89922 10.38106 11.34266 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033123 B = 0.002850 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.125992 B = 9821.097676 C = 9898.391834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.324 6.324 4 C 0.049 3.951 5 H 0.116 0.884 6 C -0.161 4.161 7 C -0.196 4.196 8 H 0.127 0.873 9 C 0.535 3.465 10 O -0.520 6.520 11 N -0.727 5.727 12 C 0.122 3.878 13 C -0.149 4.149 14 C 0.156 3.844 15 N -0.603 5.603 16 C 0.163 3.837 17 C -0.252 4.252 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.280 1.280 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.399 0.601 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.028 0.972 40 H 0.042 0.958 41 H -0.002 1.002 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 -18.584 12.268 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.241 6.241 4 C -0.010 4.010 5 H 0.134 0.866 6 C -0.199 4.199 7 C -0.218 4.218 8 H 0.145 0.855 9 C 0.320 3.680 10 O -0.395 6.395 11 N -0.379 5.379 12 C -0.002 4.002 13 C -0.190 4.190 14 C 0.028 3.972 15 N -0.326 5.326 16 C 0.018 3.982 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.206 1.206 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.233 0.767 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.515 -18.406 12.251 22.387 hybrid contribution 1.194 0.074 -1.067 1.603 sum -2.321 -18.331 11.184 21.599 Atomic orbital electron populations 1.21704 0.93589 1.01860 1.03554 1.22539 0.95931 0.84042 0.99638 1.88190 1.17023 1.25329 1.93561 1.22527 0.83628 0.92918 1.01930 0.86640 1.23412 1.02946 1.02454 0.91076 1.22803 1.01468 1.00289 0.97190 0.85521 1.19483 0.88576 0.81469 0.78513 1.90747 1.15440 1.75578 1.57773 1.46135 1.10806 1.22914 1.58009 1.21458 0.92525 0.89269 0.96944 1.22539 1.00437 0.95689 1.00358 1.20712 0.92479 0.88595 0.95396 1.44014 1.63443 1.15006 1.10101 1.20797 0.95960 0.89302 0.92154 1.19238 1.11250 1.22462 0.85257 0.91287 1.24972 0.95988 1.01271 0.97703 1.70093 1.17602 1.35715 1.32013 0.86273 0.76893 0.78091 0.85298 1.21483 1.21814 1.20586 0.91313 0.91895 0.91510 0.93463 0.93591 0.87628 0.87204 0.76712 0.91976 0.92152 0.92222 0.91371 0.93633 0.94267 0.95345 0.93879 0.98351 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.52 6.53 37.16 0.24 0.76 16 3 O -0.32 -4.23 8.48 -57.36 -0.49 -4.71 16 4 C 0.05 0.50 6.40 -26.73 -0.17 0.33 16 5 H 0.12 0.80 7.93 -51.93 -0.41 0.39 16 6 C -0.16 -1.47 10.18 -26.73 -0.27 -1.74 16 7 C -0.20 -2.10 6.19 -91.77 -0.57 -2.67 16 8 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 9 C 0.53 7.97 7.61 -10.99 -0.08 7.88 16 10 O -0.52 -9.78 14.92 -16.58 -0.25 -10.03 16 11 N -0.73 -10.28 5.56 -60.29 -0.33 -10.62 16 12 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 13 C -0.15 -2.71 5.65 -26.73 -0.15 -2.86 16 14 C 0.16 3.22 5.71 -4.05 -0.02 3.20 16 15 N -0.60 -15.34 2.93 -181.13 -0.53 -15.87 16 16 C 0.16 4.06 9.02 59.85 0.54 4.60 16 17 C -0.25 -6.99 9.68 -15.06 -0.15 -7.13 16 18 H 0.07 1.87 7.86 -52.48 -0.41 1.46 16 19 C 0.00 -0.04 5.06 -17.43 -0.09 -0.13 16 20 N -0.91 -26.57 10.67 55.49 0.59 -25.98 16 21 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 4.79 8.47 -40.82 -0.35 4.45 16 33 H 0.06 1.03 8.14 -51.94 -0.42 0.61 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 38 H 0.04 0.74 7.86 -51.93 -0.41 0.34 16 39 H 0.03 0.76 7.40 -51.93 -0.38 0.37 16 40 H 0.04 1.15 7.21 -51.93 -0.37 0.78 16 41 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -33.55 350.05 -8.49 -42.04 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.37 Total: -0.25 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.36 Total: 3.20 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.27 Total: -52.47 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.73 Total: -14.74 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.55 -8.49 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234467775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.596 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds