Wall clock time and date at job start Mon Mar 30 2020 01:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.46826 * 2 1 4 4 C 1.42905 * 113.99851 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.54719 * 4.33346 * 4 3 2 6 6 C 1.53000 * 117.49693 * 218.62273 * 4 3 2 7 7 C 1.52994 * 117.49761 * 149.99724 * 4 3 2 8 8 H 1.08998 * 117.50070 * 214.99980 * 7 4 3 9 9 C 1.50698 * 117.50217 * 0.02562 * 7 4 3 10 10 O 1.21288 * 119.99658 * 359.97438 * 9 7 4 11 11 N 1.34778 * 120.00637 * 179.97438 * 9 7 4 12 12 C 1.46498 * 120.00245 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46801 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46956 * 180.02562 * 13 12 11 15 15 N 1.46493 * 109.47469 * 180.02562 * 14 13 12 16 16 C 1.46503 * 120.00288 * 270.00580 * 15 14 13 17 17 C 1.36940 * 120.00298 * 89.99774 * 15 14 13 18 18 H 1.08003 * 119.99558 * 20.36533 * 17 15 14 19 19 C 1.38806 * 120.00357 * 200.36770 * 17 15 14 20 20 N 1.31626 * 119.99966 * 14.98889 * 19 17 15 21 21 Si 1.86798 * 120.00070 * 194.98761 * 19 17 15 22 22 H 1.48499 * 109.47440 * 85.00244 * 21 19 17 23 23 H 1.48501 * 109.47212 * 205.00131 * 21 19 17 24 24 H 1.48498 * 109.47071 * 325.00106 * 21 19 17 25 25 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47393 * 299.99881 * 1 2 3 27 27 H 1.09004 * 109.47397 * 60.00177 * 1 2 3 28 28 H 1.08998 * 109.47393 * 240.00119 * 2 1 3 29 29 H 1.08999 * 109.46970 * 119.99761 * 2 1 3 30 30 H 1.08993 * 117.49644 * 0.02562 * 6 4 3 31 31 H 1.09000 * 117.49401 * 145.01975 * 6 4 3 32 32 H 0.97001 * 119.99377 * 359.97438 * 11 9 7 33 33 H 1.08989 * 109.47240 * 300.00077 * 12 11 9 34 34 H 1.09006 * 109.46878 * 60.00333 * 12 11 9 35 35 H 1.08996 * 109.47203 * 299.99952 * 13 12 11 36 36 H 1.08998 * 109.46911 * 60.00316 * 13 12 11 37 37 H 1.09006 * 109.47079 * 300.00552 * 14 13 12 38 38 H 1.09003 * 109.47436 * 60.00116 * 14 13 12 39 39 H 1.08994 * 109.47592 * 95.08676 * 16 15 14 40 40 H 1.08994 * 109.47360 * 215.09306 * 16 15 14 41 41 H 1.09000 * 109.46441 * 335.09190 * 16 15 14 42 42 H 0.97006 * 119.99491 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9769 0.5198 -0.0734 6 6 4.0509 2.5732 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 4.9910 2.5546 -1.1982 9 6 3.0966 3.6851 -1.2953 10 8 1.8993 3.4984 -1.2428 11 7 3.5810 4.7849 -1.9056 12 6 2.6614 5.7544 -2.5061 13 6 3.4627 6.9001 -3.1275 14 6 2.5024 7.9129 -3.7541 15 7 3.2696 9.0097 -4.3496 16 6 3.6028 10.1901 -3.5484 17 6 3.6755 8.9316 -5.6551 18 1 3.1783 8.2562 -6.3356 19 6 4.7258 9.7203 -6.1038 20 7 5.5188 10.3152 -5.2379 21 14 5.0140 9.9376 -7.9366 22 1 4.1573 11.0388 -8.4453 23 1 6.4413 10.2694 -8.1774 24 1 4.6725 8.6775 -8.6442 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3723 3.2189 1.4050 31 1 5.0052 2.3649 1.3316 32 1 4.5385 4.9344 -1.9471 33 1 2.0697 5.2635 -3.2787 34 1 1.9981 6.1506 -1.7372 35 1 4.0541 7.3908 -2.3545 36 1 4.1263 6.5042 -3.8963 37 1 1.9105 7.4224 -4.5270 38 1 1.8391 8.3088 -2.9850 39 1 4.5996 10.0715 -3.1238 40 1 3.5807 11.0770 -4.1815 41 1 2.8758 10.2999 -2.7437 42 1 6.2526 10.8667 -5.5515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234467775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:54 Heat of formation + Delta-G solvation = -57.915415 kcal Electronic energy + Delta-G solvation = -20384.029888 eV Core-core repulsion = 17172.077418 eV Total energy + Delta-G solvation = -3211.952470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97311 -39.02846 -37.92392 -36.26225 -35.87341 -33.71844 -31.81139 -31.50298 -27.99325 -27.38023 -25.01724 -23.74082 -23.25745 -22.95433 -22.13975 -20.86105 -18.77026 -18.71139 -17.26925 -16.85373 -16.67700 -16.62261 -16.38474 -15.84806 -15.47048 -15.32653 -14.74496 -14.67048 -14.47809 -13.89301 -13.55856 -13.34038 -13.25944 -13.01101 -12.99149 -12.80873 -12.70720 -12.46084 -12.28950 -12.08983 -12.02609 -11.88101 -11.82180 -11.48282 -11.39802 -10.79426 -10.62669 -10.04253 -10.00593 -8.82741 -7.82852 -5.28740 1.46895 1.48865 1.56621 1.58470 2.22283 2.52146 2.63128 2.90973 3.30790 3.65680 3.78895 3.84845 3.96589 4.11102 4.17783 4.21301 4.32298 4.42576 4.48895 4.51319 4.51905 4.64964 4.79532 4.82387 4.87650 4.89863 4.91905 5.03532 5.05047 5.27324 5.29102 5.31463 5.42409 5.53377 5.64179 5.72087 6.32651 6.41422 6.64786 7.15253 7.35833 7.87770 8.30688 9.20883 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033123 B = 0.002850 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.125992 B = 9821.097676 C = 9898.391834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.042 3.958 5 H 0.152 0.848 6 C -0.148 4.148 7 C -0.207 4.207 8 H 0.158 0.842 9 C 0.528 3.472 10 O -0.566 6.566 11 N -0.722 5.722 12 C 0.135 3.865 13 C -0.127 4.127 14 C 0.151 3.849 15 N -0.621 5.621 16 C 0.175 3.825 17 C -0.262 4.262 18 H 0.071 0.929 19 C -0.055 4.055 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.270 1.270 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.411 0.589 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.006 0.994 40 H 0.016 0.984 41 H 0.031 0.969 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 -20.372 12.713 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.283 6.283 4 C -0.017 4.017 5 H 0.169 0.831 6 C -0.185 4.185 7 C -0.228 4.228 8 H 0.176 0.824 9 C 0.315 3.685 10 O -0.444 6.444 11 N -0.374 5.374 12 C 0.010 3.990 13 C -0.168 4.168 14 C 0.024 3.976 15 N -0.344 5.344 16 C 0.030 3.970 17 C -0.392 4.392 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.585 5.585 21 Si 0.796 3.204 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.195 1.195 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.247 0.753 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.024 0.976 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.878 -20.219 12.706 24.053 hybrid contribution 0.920 0.603 -1.155 1.595 sum -1.958 -19.617 11.551 22.849 Atomic orbital electron populations 1.21740 0.93885 1.03107 1.01972 1.22729 0.95850 0.83009 1.01097 1.88145 1.18954 1.27449 1.93778 1.22958 0.82833 0.94235 1.01667 0.83092 1.23497 1.03983 1.01312 0.89724 1.22881 1.01796 0.99739 0.98370 0.82433 1.20251 0.88737 0.81738 0.77740 1.90727 1.17636 1.76591 1.59473 1.46058 1.11187 1.22549 1.57618 1.21142 0.92298 0.88875 0.96641 1.22178 0.99464 0.95631 0.99504 1.20884 0.92619 0.88079 0.96015 1.44251 1.63679 1.16493 1.09947 1.20569 0.95788 0.88374 0.92257 1.19542 1.10984 1.22146 0.86552 0.91151 1.25726 0.96095 1.01467 1.01675 1.70248 1.18083 1.36526 1.33629 0.85271 0.76326 0.78190 0.80592 1.21360 1.22091 1.19463 0.88652 0.92695 0.93808 0.92607 0.91305 0.89845 0.83526 0.75330 0.92688 0.92289 0.92651 0.93068 0.93371 0.92330 0.97574 0.96542 0.95073 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.05 0.85 6.53 71.98 0.47 1.32 16 3 O -0.36 -9.25 8.48 -127.82 -1.08 -10.33 16 4 C 0.04 0.75 6.40 30.59 0.20 0.94 16 5 H 0.15 1.51 7.93 -2.39 -0.02 1.49 16 6 C -0.15 -2.32 10.18 30.60 0.31 -2.01 16 7 C -0.21 -3.96 6.19 -11.54 -0.07 -4.03 16 8 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 9 C 0.53 15.34 7.61 87.66 0.67 16.01 16 10 O -0.57 -21.49 14.92 18.11 0.27 -21.22 16 11 N -0.72 -19.74 5.56 -463.06 -2.57 -22.32 16 12 C 0.14 4.23 5.67 86.38 0.49 4.72 16 13 C -0.13 -4.54 5.65 30.59 0.17 -4.36 16 14 C 0.15 6.07 5.71 86.38 0.49 6.56 16 15 N -0.62 -31.42 2.93 -726.96 -2.13 -33.55 16 16 C 0.18 8.76 9.02 127.77 1.15 9.91 16 17 C -0.26 -14.48 9.68 84.03 0.81 -13.67 16 18 H 0.07 3.79 7.86 -2.91 -0.02 3.77 16 19 C -0.05 -3.08 5.06 84.86 0.43 -2.65 16 20 N -0.94 -55.53 10.67 21.65 0.23 -55.30 16 21 Si 0.97 45.26 29.58 68.60 2.03 47.29 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.41 9.28 8.47 -92.71 -0.79 8.49 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.91 8.03 -2.38 -0.02 1.89 16 38 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 39 H 0.01 0.32 7.40 -2.39 -0.02 0.31 16 40 H 0.02 0.87 7.21 -2.39 -0.02 0.85 16 41 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 42 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -73.50 350.05 2.81 -70.69 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.20 Total: 13.85 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.86 Total: 10.88 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -4.47 Total: -111.16 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.81 Total: -31.55 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.50 2.81 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234467775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.776 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds