Wall clock time and date at job start Mon Mar 30 2020 00:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47794 * 2 1 4 4 C 1.46898 * 111.00172 * 65.60101 * 3 2 1 5 5 C 1.50705 * 109.46886 * 66.05175 * 4 3 2 6 6 H 1.07994 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99910 * 180.27196 * 5 4 3 8 8 N 1.31511 * 119.99906 * 179.72232 * 7 5 4 9 9 Si 1.86806 * 120.00192 * 359.73201 * 7 5 4 10 10 H 1.48495 * 109.47279 * 89.99593 * 9 7 5 11 11 H 1.48501 * 109.46882 * 209.99767 * 9 7 5 12 12 H 1.48506 * 109.46597 * 329.99255 * 9 7 5 13 13 C 1.46909 * 110.99538 * 301.65419 * 3 2 1 14 14 H 1.09004 * 109.50433 * 67.94216 * 13 3 2 15 15 C 1.53120 * 109.50170 * 307.86845 * 13 3 2 16 16 C 1.53118 * 109.16080 * 182.40419 * 15 13 3 17 17 C 1.53041 * 109.27625 * 57.65355 * 16 15 13 18 18 H 1.08998 * 109.45961 * 60.83714 * 17 16 15 19 19 C 1.50697 * 109.45819 * 180.80543 * 17 16 15 20 20 O 1.20820 * 120.00330 * 100.00463 * 19 17 16 21 21 O 1.34237 * 120.00018 * 279.99799 * 19 17 16 22 22 C 1.45198 * 116.99709 * 180.02562 * 21 19 17 23 23 N 1.46847 * 109.52505 * 300.82155 * 17 16 15 24 24 C 1.46845 * 111.19618 * 61.74163 * 23 17 16 25 25 H 1.09001 * 109.47460 * 179.82260 * 1 2 3 26 26 H 1.08994 * 109.47214 * 299.83319 * 1 2 3 27 27 H 1.09008 * 109.46613 * 59.82634 * 1 2 3 28 28 H 1.08994 * 109.47526 * 239.99229 * 2 1 3 29 29 H 1.09004 * 109.46974 * 119.99619 * 2 1 3 30 30 H 1.09001 * 109.47462 * 306.05236 * 4 3 2 31 31 H 1.08999 * 109.47349 * 186.04877 * 4 3 2 32 32 H 0.96999 * 120.00241 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.52569 * 302.31126 * 15 13 3 34 34 H 1.09002 * 109.52010 * 62.43584 * 15 13 3 35 35 H 1.09000 * 109.50553 * 177.59657 * 16 15 13 36 36 H 1.09003 * 109.50286 * 297.71673 * 16 15 13 37 37 H 1.08996 * 109.46994 * 299.99607 * 22 21 19 38 38 H 1.08995 * 109.47530 * 60.00369 * 22 21 19 39 39 H 1.09009 * 109.46589 * 180.02562 * 22 21 19 40 40 H 1.00901 * 110.99775 * 297.64526 * 23 17 16 41 41 H 1.08999 * 109.46146 * 178.24446 * 24 23 17 42 42 H 1.09000 * 109.46329 * 58.27586 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6613 2.0702 1.2489 5 6 2.3935 1.4310 2.4006 6 1 3.0583 0.5988 2.2226 7 6 2.2100 1.9048 3.6823 8 7 2.8448 1.3435 4.6880 9 14 1.0594 3.3439 3.9903 10 1 -0.3116 2.8350 4.2483 11 1 1.5324 4.1120 5.1699 12 1 1.0430 4.2285 2.7976 13 6 1.5167 2.1212 -1.1675 14 1 0.4394 2.2584 -1.0747 15 6 1.8232 1.3297 -2.4419 16 6 1.3497 2.1313 -3.6575 17 6 2.0398 3.4972 -3.6620 18 1 3.1189 3.3587 -3.7292 19 6 1.5617 4.2974 -4.8461 20 8 0.7126 5.1444 -4.6997 21 8 2.0793 4.0692 -6.0634 22 6 1.5718 4.8778 -7.1575 23 7 1.7150 4.2153 -2.4229 24 6 2.2020 3.4874 -1.2442 25 1 -0.3634 -1.0276 -0.0032 26 1 -0.3633 0.5112 0.8914 27 1 -0.3633 0.5166 -0.8885 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 0.5866 1.9895 1.4121 31 1 1.9404 3.1216 1.1796 32 1 2.7154 1.6766 5.5898 33 1 2.8972 1.1579 -2.5147 34 1 1.3026 0.3725 -2.4103 35 1 1.6035 1.5923 -4.5703 36 1 0.2697 2.2694 -3.6042 37 1 0.4987 4.7171 -7.2607 38 1 1.7634 5.9306 -6.9505 39 1 2.0723 4.5921 -8.0828 40 1 0.7236 4.3902 -2.3557 41 1 1.9740 4.0590 -0.3445 42 1 3.2804 3.3489 -1.3228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246783621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:20 Heat of formation + Delta-G solvation = -75.644512 kcal Electronic energy + Delta-G solvation = -21821.788239 eV Core-core repulsion = 18609.066977 eV Total energy + Delta-G solvation = -3212.721261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83703 -39.20220 -36.88597 -36.05685 -32.64329 -31.75202 -30.82031 -29.50036 -28.01680 -26.53012 -24.42464 -23.29852 -22.48243 -21.15167 -20.51037 -18.97515 -17.84282 -17.16604 -16.78561 -16.49045 -15.48547 -15.21610 -15.00319 -14.56633 -14.13837 -13.96702 -13.69243 -13.28217 -13.13406 -12.67226 -12.48388 -12.36477 -12.23264 -12.09154 -11.86569 -11.61383 -11.45362 -11.14009 -11.08608 -11.01004 -10.75666 -10.72790 -10.44642 -10.14305 -9.85039 -9.81663 -9.27217 -8.57865 -8.40457 -7.39331 -6.06024 -4.02894 2.04904 2.43700 3.27205 3.35842 3.37225 4.18833 4.40979 4.44791 4.65684 4.74539 4.85609 4.87980 4.93325 5.12391 5.14897 5.24698 5.27280 5.39611 5.48523 5.64686 5.67802 5.75924 5.82767 5.91647 5.98183 6.11658 6.16076 6.21668 6.32816 6.45509 6.46977 6.73433 6.84836 6.96260 7.01810 7.29621 7.60017 7.60589 7.88358 8.02760 8.64528 9.02664 9.55910 11.07122 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.004461 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.360518 B = 6275.274887 C = 6803.683469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 N -0.515 5.515 4 C 0.156 3.844 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.044 3.956 14 H 0.035 0.965 15 C -0.112 4.112 16 C -0.143 4.143 17 C 0.098 3.902 18 H 0.118 0.882 19 C 0.469 3.531 20 O -0.499 6.499 21 O -0.360 6.360 22 C 0.036 3.964 23 N -0.669 5.669 24 C 0.066 3.934 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.088 0.912 30 H -0.012 1.012 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.349 0.651 41 H 0.089 0.911 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 2.421 -20.695 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.072 4.072 3 N -0.239 5.239 4 C 0.029 3.971 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.067 4.067 14 H 0.052 0.948 15 C -0.150 4.150 16 C -0.183 4.183 17 C -0.013 4.013 18 H 0.136 0.864 19 C 0.311 3.689 20 O -0.385 6.385 21 O -0.276 6.276 22 C -0.058 4.058 23 N -0.300 5.300 24 C -0.063 4.063 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.005 0.995 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.168 0.832 41 H 0.107 0.893 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.544 3.136 -20.546 20.939 hybrid contribution -2.367 0.208 0.320 2.398 sum -4.911 3.344 -20.226 21.080 Atomic orbital electron populations 1.22404 0.99588 1.01212 1.01509 1.22074 0.91822 0.91110 1.02215 1.62238 1.58163 1.01605 1.01851 1.20292 0.94189 0.95030 0.87542 1.21002 1.26429 1.17699 0.89319 0.90152 1.24885 0.95717 0.96557 0.96121 1.69886 1.42835 1.41690 0.99538 0.86907 0.81399 0.83496 0.78205 1.20475 1.21150 1.19125 1.22345 0.96974 0.95377 0.92008 0.94762 1.21701 1.02588 0.98401 0.92307 1.22226 1.00548 0.95135 1.00418 1.21192 1.02665 0.90787 0.86695 0.86393 1.23756 0.79288 0.81774 0.84078 1.90649 1.30487 1.32274 1.85135 1.86509 1.63132 1.60351 1.17614 1.23251 1.00056 0.95306 0.87209 1.60600 1.22783 1.46455 1.00151 1.22192 1.00839 0.91713 0.91544 0.93109 0.91944 0.93763 0.92321 0.89328 0.99470 0.95089 0.92682 0.90405 0.90952 0.90296 0.91575 0.92027 0.91852 0.88119 0.83210 0.89313 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 9.07 37.16 0.34 -2.74 16 2 C 0.06 1.00 5.35 -3.83 -0.02 0.98 16 3 N -0.52 -9.92 4.57 -227.98 -1.04 -10.96 16 4 C 0.16 3.58 3.49 -4.97 -0.02 3.56 16 5 C -0.51 -13.90 8.99 -34.44 -0.31 -14.21 16 6 H 0.08 2.41 7.38 -52.49 -0.39 2.02 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 9 Si 0.87 21.28 27.46 -169.99 -4.67 16.61 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.24 6.55 56.52 0.37 -5.87 16 13 C 0.04 0.68 1.45 -67.63 -0.10 0.59 16 14 H 0.03 0.56 6.73 -51.93 -0.35 0.21 16 15 C -0.11 -1.41 4.59 -26.61 -0.12 -1.53 16 16 C -0.14 -1.55 5.34 -26.65 -0.14 -1.69 16 17 C 0.10 1.16 2.94 -68.87 -0.20 0.95 16 18 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 19 C 0.47 5.86 7.20 36.00 0.26 6.12 16 20 O -0.50 -7.51 15.94 -18.75 -0.30 -7.81 16 21 O -0.36 -3.86 10.57 -39.28 -0.41 -4.27 16 22 C 0.04 0.28 10.56 101.05 1.07 1.34 16 23 N -0.67 -9.19 6.28 -107.99 -0.68 -9.87 16 24 C 0.07 1.01 5.72 -3.84 -0.02 0.99 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.16 6.43 -51.93 -0.33 0.83 16 27 H 0.04 0.66 6.11 -51.92 -0.32 0.34 16 28 H 0.06 0.91 6.36 -51.93 -0.33 0.58 16 29 H 0.09 1.82 6.72 -51.93 -0.35 1.48 16 30 H -0.01 -0.29 5.62 -51.93 -0.29 -0.58 16 31 H 0.03 0.73 5.08 -51.93 -0.26 0.46 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.89 6.02 -51.93 -0.31 0.58 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 38 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 39 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 40 H 0.35 4.87 8.31 -39.29 -0.33 4.54 16 41 H 0.09 1.52 6.35 -51.93 -0.33 1.19 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -30.75 322.39 -7.40 -38.16 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.56 Total: 3.52 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.63 Total: -3.78 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.95 Total: -47.29 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.71 Total: -12.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.75 -7.40 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246783621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.489 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds