Wall clock time and date at job start Mon Mar 30 2020 00:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47794 * 2 1 4 4 C 1.46898 * 111.00172 * 65.60101 * 3 2 1 5 5 C 1.50705 * 109.46886 * 66.05175 * 4 3 2 6 6 H 1.07994 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99910 * 180.27196 * 5 4 3 8 8 N 1.31511 * 119.99906 * 179.72232 * 7 5 4 9 9 Si 1.86806 * 120.00192 * 359.73201 * 7 5 4 10 10 H 1.48495 * 109.47279 * 89.99593 * 9 7 5 11 11 H 1.48501 * 109.46882 * 209.99767 * 9 7 5 12 12 H 1.48506 * 109.46597 * 329.99255 * 9 7 5 13 13 C 1.46909 * 110.99538 * 301.65419 * 3 2 1 14 14 H 1.09004 * 109.50433 * 67.94216 * 13 3 2 15 15 C 1.53120 * 109.50170 * 307.86845 * 13 3 2 16 16 C 1.53118 * 109.16080 * 182.40419 * 15 13 3 17 17 C 1.53041 * 109.27625 * 57.65355 * 16 15 13 18 18 H 1.08998 * 109.45961 * 60.83714 * 17 16 15 19 19 C 1.50697 * 109.45819 * 180.80543 * 17 16 15 20 20 O 1.20820 * 120.00330 * 100.00463 * 19 17 16 21 21 O 1.34237 * 120.00018 * 279.99799 * 19 17 16 22 22 C 1.45198 * 116.99709 * 180.02562 * 21 19 17 23 23 N 1.46847 * 109.52505 * 300.82155 * 17 16 15 24 24 C 1.46845 * 111.19618 * 61.74163 * 23 17 16 25 25 H 1.09001 * 109.47460 * 179.82260 * 1 2 3 26 26 H 1.08994 * 109.47214 * 299.83319 * 1 2 3 27 27 H 1.09008 * 109.46613 * 59.82634 * 1 2 3 28 28 H 1.08994 * 109.47526 * 239.99229 * 2 1 3 29 29 H 1.09004 * 109.46974 * 119.99619 * 2 1 3 30 30 H 1.09001 * 109.47462 * 306.05236 * 4 3 2 31 31 H 1.08999 * 109.47349 * 186.04877 * 4 3 2 32 32 H 0.96999 * 120.00241 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.52569 * 302.31126 * 15 13 3 34 34 H 1.09002 * 109.52010 * 62.43584 * 15 13 3 35 35 H 1.09000 * 109.50553 * 177.59657 * 16 15 13 36 36 H 1.09003 * 109.50286 * 297.71673 * 16 15 13 37 37 H 1.08996 * 109.46994 * 299.99607 * 22 21 19 38 38 H 1.08995 * 109.47530 * 60.00369 * 22 21 19 39 39 H 1.09009 * 109.46589 * 180.02562 * 22 21 19 40 40 H 1.00901 * 110.99775 * 297.64526 * 23 17 16 41 41 H 1.08999 * 109.46146 * 178.24446 * 24 23 17 42 42 H 1.09000 * 109.46329 * 58.27586 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6613 2.0702 1.2489 5 6 2.3935 1.4310 2.4006 6 1 3.0583 0.5988 2.2226 7 6 2.2100 1.9048 3.6823 8 7 2.8448 1.3435 4.6880 9 14 1.0594 3.3439 3.9903 10 1 -0.3116 2.8350 4.2483 11 1 1.5324 4.1120 5.1699 12 1 1.0430 4.2285 2.7976 13 6 1.5167 2.1212 -1.1675 14 1 0.4394 2.2584 -1.0747 15 6 1.8232 1.3297 -2.4419 16 6 1.3497 2.1313 -3.6575 17 6 2.0398 3.4972 -3.6620 18 1 3.1189 3.3587 -3.7292 19 6 1.5617 4.2974 -4.8461 20 8 0.7126 5.1444 -4.6997 21 8 2.0793 4.0692 -6.0634 22 6 1.5718 4.8778 -7.1575 23 7 1.7150 4.2153 -2.4229 24 6 2.2020 3.4874 -1.2442 25 1 -0.3634 -1.0276 -0.0032 26 1 -0.3633 0.5112 0.8914 27 1 -0.3633 0.5166 -0.8885 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 0.5866 1.9895 1.4121 31 1 1.9404 3.1216 1.1796 32 1 2.7154 1.6766 5.5898 33 1 2.8972 1.1579 -2.5147 34 1 1.3026 0.3725 -2.4103 35 1 1.6035 1.5923 -4.5703 36 1 0.2697 2.2694 -3.6042 37 1 0.4987 4.7171 -7.2607 38 1 1.7634 5.9306 -6.9505 39 1 2.0723 4.5921 -8.0828 40 1 0.7236 4.3902 -2.3557 41 1 1.9740 4.0590 -0.3445 42 1 3.2804 3.3489 -1.3228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246783621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:19 Heat of formation + Delta-G solvation = -98.548472 kcal Electronic energy + Delta-G solvation = -21822.781429 eV Core-core repulsion = 18609.066977 eV Total energy + Delta-G solvation = -3213.714452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79716 -40.39502 -37.99596 -37.19705 -34.70780 -32.87659 -32.02269 -31.08257 -28.99957 -27.95795 -25.59309 -24.66406 -23.83755 -22.42914 -21.55821 -20.35479 -18.96173 -18.76694 -18.03223 -17.37026 -16.83676 -16.63656 -16.35491 -15.94776 -15.47523 -15.06738 -14.93877 -14.52407 -14.28777 -14.20369 -13.81703 -13.56964 -13.43190 -13.35356 -13.09820 -12.93123 -12.59616 -12.55002 -12.43271 -12.41874 -12.10721 -11.80753 -11.78782 -11.55551 -11.43164 -11.32426 -11.21324 -10.74703 -9.49477 -8.93379 -8.26010 -6.27149 1.10451 1.33210 1.35933 1.45497 1.60226 2.34659 3.04462 3.08388 3.31419 3.72085 3.76766 3.82273 3.99659 4.14558 4.22518 4.31645 4.34285 4.34909 4.43148 4.46426 4.55846 4.62654 4.72161 4.74971 4.84606 4.88916 4.96006 5.02588 5.08739 5.17679 5.27393 5.30944 5.31572 5.46463 5.61047 5.74672 6.06411 6.19354 6.43666 6.69787 6.71456 6.79632 7.35820 8.90663 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.004461 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.360518 B = 6275.274887 C = 6803.683469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.056 3.944 3 N -0.528 5.528 4 C 0.167 3.833 5 C -0.506 4.506 6 H 0.040 0.960 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.249 1.249 13 C 0.046 3.954 14 H 0.032 0.968 15 C -0.105 4.105 16 C -0.132 4.132 17 C 0.097 3.903 18 H 0.130 0.870 19 C 0.474 3.526 20 O -0.530 6.530 21 O -0.359 6.359 22 C 0.028 3.972 23 N -0.672 5.672 24 C 0.075 3.925 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.050 0.950 30 H -0.013 1.013 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.134 0.866 40 H 0.348 0.652 41 H 0.067 0.933 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 2.885 -23.432 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.072 4.072 3 N -0.251 5.251 4 C 0.040 3.960 5 C -0.544 4.544 6 H 0.058 0.942 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.173 1.173 13 C -0.065 4.065 14 H 0.050 0.950 15 C -0.142 4.142 16 C -0.171 4.171 17 C -0.014 4.014 18 H 0.147 0.853 19 C 0.317 3.683 20 O -0.419 6.419 21 O -0.275 6.275 22 C -0.065 4.065 23 N -0.304 5.304 24 C -0.055 4.055 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.005 0.995 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.085 0.915 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.524 3.590 -23.330 23.867 hybrid contribution -1.982 0.000 1.055 2.246 sum -5.506 3.590 -22.276 23.225 Atomic orbital electron populations 1.22305 0.98110 1.02421 1.00999 1.22053 0.93038 0.90239 1.01828 1.62116 1.59094 1.02341 1.01585 1.19999 0.93220 0.94806 0.87957 1.21256 1.25585 1.16470 0.91137 0.94164 1.25757 0.97543 0.99593 0.95893 1.70039 1.45052 1.43807 1.00115 0.85840 0.79189 0.80103 0.78582 1.19662 1.20900 1.17316 1.22431 0.96656 0.95614 0.91771 0.94993 1.21643 1.02960 0.98471 0.91158 1.22137 1.00291 0.94222 1.00493 1.21275 1.03460 0.91079 0.85620 0.85258 1.23785 0.78618 0.81132 0.84729 1.90643 1.31920 1.33642 1.85651 1.86496 1.62854 1.60629 1.17508 1.23559 1.00673 0.94944 0.87324 1.60539 1.22719 1.46680 1.00419 1.21989 1.00574 0.91366 0.91546 0.91120 0.94748 0.91782 0.89257 0.93142 0.99544 0.95074 0.92601 0.90186 0.90051 0.87762 0.91569 0.91894 0.92233 0.84831 0.83335 0.91472 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.58 9.07 71.98 0.65 -4.92 16 2 C 0.06 1.97 5.35 86.30 0.46 2.44 16 3 N -0.53 -20.06 4.57 -875.20 -4.00 -24.06 16 4 C 0.17 7.72 3.49 85.56 0.30 8.02 16 5 C -0.51 -28.68 8.99 25.60 0.23 -28.45 16 6 H 0.04 2.54 7.38 -2.91 -0.02 2.52 16 7 C 0.01 0.53 5.47 84.65 0.46 0.99 16 8 N -0.95 -59.27 13.96 21.44 0.30 -58.97 16 9 Si 0.94 44.26 27.46 68.60 1.88 46.14 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.25 -10.98 6.55 99.48 0.65 -10.32 16 13 C 0.05 1.34 1.45 44.97 0.07 1.41 16 14 H 0.03 0.98 6.73 -2.39 -0.02 0.96 16 15 C -0.10 -2.30 4.59 30.67 0.14 -2.16 16 16 C -0.13 -2.38 5.34 30.65 0.16 -2.21 16 17 C 0.10 2.03 2.94 44.19 0.13 2.16 16 18 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 19 C 0.47 10.76 7.20 71.24 0.51 11.28 16 20 O -0.53 -15.12 15.94 21.98 0.35 -14.77 16 21 O -0.36 -6.69 10.57 -51.49 -0.54 -7.23 16 22 C 0.03 0.36 10.56 113.37 1.20 1.56 16 23 N -0.67 -17.42 6.28 -495.57 -3.11 -20.53 16 24 C 0.07 2.20 5.72 86.33 0.49 2.69 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.25 6.43 -2.39 -0.02 1.23 16 27 H 0.06 1.73 6.11 -2.38 -0.01 1.71 16 28 H 0.09 2.56 6.36 -2.39 -0.02 2.55 16 29 H 0.05 2.14 6.72 -2.39 -0.02 2.13 16 30 H -0.01 -0.60 5.62 -2.39 -0.01 -0.62 16 31 H 0.03 1.45 5.08 -2.39 -0.01 1.44 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.08 1.68 6.02 -2.39 -0.01 1.66 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 38 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 39 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.35 9.21 8.31 -89.69 -0.75 8.46 16 41 H 0.07 2.26 6.35 -2.39 -0.02 2.25 16 42 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -68.39 322.39 -0.09 -68.48 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.22 Total: 18.14 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.81 Total: -7.20 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -6.81 Total: -103.57 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.19 Total: -22.00 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -68.39 -0.09 -68.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246783621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.068 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds