Wall clock time and date at job start Mon Mar 30 2020 01:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.46919 * 2 1 4 4 C 1.34237 * 117.00134 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99739 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00169 * 180.02562 * 4 3 2 7 7 N 1.46900 * 109.47017 * 185.10306 * 6 4 3 8 8 C 1.46907 * 110.99875 * 199.80004 * 7 6 4 9 9 C 1.50698 * 109.46878 * 151.47795 * 8 7 6 10 10 H 1.07994 * 120.00206 * 2.69404 * 9 8 7 11 11 C 1.37879 * 119.99931 * 182.68998 * 9 8 7 12 12 N 1.31509 * 119.99684 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00104 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46877 * 90.00412 * 13 11 9 15 15 H 1.48495 * 109.47306 * 210.00170 * 13 11 9 16 16 H 1.48503 * 109.47232 * 330.00423 * 13 11 9 17 17 C 1.46897 * 111.00078 * 75.84819 * 7 6 4 18 18 H 1.08997 * 109.53638 * 311.88249 * 17 7 6 19 19 C 1.53092 * 109.49083 * 191.78851 * 17 7 6 20 20 C 1.53118 * 109.16109 * 182.39962 * 19 17 7 21 21 C 1.53042 * 109.27722 * 57.65327 * 20 19 17 22 22 N 1.46847 * 109.52242 * 300.82545 * 21 20 19 23 23 C 1.46843 * 111.20018 * 61.74006 * 22 21 20 24 24 H 1.08999 * 109.47125 * 299.99694 * 1 2 3 25 25 H 1.08997 * 109.47168 * 60.00402 * 1 2 3 26 26 H 1.09007 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47125 * 240.00306 * 2 1 3 28 28 H 1.08999 * 109.47642 * 119.99801 * 2 1 3 29 29 H 1.09001 * 109.47608 * 65.09562 * 6 4 3 30 30 H 1.09008 * 109.46979 * 305.10166 * 6 4 3 31 31 H 1.09002 * 109.47236 * 271.47874 * 8 7 6 32 32 H 1.09000 * 109.46796 * 31.48253 * 8 7 6 33 33 H 0.97007 * 120.00343 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.52656 * 62.49296 * 19 17 7 35 35 H 1.09007 * 109.52610 * 302.30333 * 19 17 7 36 36 H 1.09002 * 109.50109 * 297.71591 * 20 19 17 37 37 H 1.08998 * 109.54043 * 177.61491 * 20 19 17 38 38 H 1.09000 * 109.45913 * 180.81111 * 21 20 19 39 39 H 1.08994 * 109.45894 * 60.83869 * 21 20 19 40 40 H 1.00899 * 110.99947 * 185.83984 * 22 21 20 41 41 H 1.08998 * 109.46315 * 58.27497 * 23 22 21 42 42 H 1.08997 * 109.46432 * 178.25203 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3825 2.8628 -0.1239 8 6 6.0139 4.1079 0.3334 9 6 7.3950 3.8081 0.8565 10 1 7.7833 2.8014 0.8100 11 6 8.1629 4.8190 1.3945 12 7 7.6899 6.0447 1.4515 13 14 9.8751 4.4475 2.0424 14 1 10.8653 4.6150 0.9485 15 1 10.1986 5.3817 3.1504 16 1 9.9225 3.0502 2.5433 17 6 5.7785 2.5474 -1.5029 18 1 5.1925 1.7033 -1.8664 19 6 7.2666 2.1893 -1.5378 20 6 7.6849 1.9205 -2.9860 21 6 7.3816 3.1557 -3.8372 22 7 5.9458 3.4565 -3.7713 23 6 5.5303 3.7644 -2.3969 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.6601 3.4382 0.9325 30 1 3.5130 3.4996 -0.8403 31 1 6.0849 4.8068 -0.5002 32 1 5.4125 4.5498 1.1278 33 1 8.2299 6.7560 1.8304 34 1 7.4408 1.2969 -0.9367 35 1 7.8503 3.0186 -1.1380 36 1 7.1289 1.0665 -3.3728 37 1 8.7530 1.7063 -3.0231 38 1 7.6651 2.9622 -4.8717 39 1 7.9486 4.0059 -3.4582 40 1 5.7048 4.2087 -4.3990 41 1 6.1059 4.6119 -2.0247 42 1 4.4691 4.0131 -2.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246908917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:14 Heat of formation + Delta-G solvation = -75.209830 kcal Electronic energy + Delta-G solvation = -22097.291412 eV Core-core repulsion = 18884.589000 eV Total energy + Delta-G solvation = -3212.702412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15391 -38.74967 -36.35451 -35.24641 -32.60862 -31.74871 -31.34296 -29.33801 -28.16130 -25.49017 -23.36368 -23.06964 -22.70861 -21.19813 -20.10324 -18.51127 -17.33402 -16.72562 -16.36912 -16.10255 -15.65112 -14.87048 -14.57799 -14.25159 -14.04000 -13.61735 -13.40827 -13.18634 -12.84709 -12.74523 -12.31417 -12.27030 -12.19523 -11.83078 -11.54485 -11.43303 -11.17476 -10.92810 -10.65939 -10.60535 -10.42359 -10.34806 -10.11463 -9.90629 -9.80479 -9.41068 -9.17775 -8.43193 -8.14327 -7.26568 -6.04885 -4.03064 2.68909 2.90740 3.30755 3.37785 3.43455 4.38562 4.50527 4.89481 4.91950 4.95547 5.11458 5.27462 5.28549 5.41484 5.48445 5.56113 5.57842 5.71072 5.72477 5.73269 5.79965 5.89458 5.91197 6.07331 6.17882 6.36459 6.38903 6.45298 6.61833 6.73787 6.95484 7.01402 7.25273 7.34300 7.39390 7.67704 7.79438 8.02169 8.10398 8.27199 8.46400 9.03290 9.58474 11.05085 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.006121 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.581755 B = 4573.511400 C = 5605.305198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.458 3.542 5 O -0.486 6.486 6 C 0.062 3.938 7 N -0.514 5.514 8 C 0.183 3.817 9 C -0.496 4.496 10 H 0.070 0.930 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.106 3.894 18 H 0.068 0.932 19 C -0.117 4.117 20 C -0.116 4.116 21 C 0.058 3.942 22 N -0.688 5.688 23 C 0.016 3.984 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.012 0.988 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.334 0.666 41 H 0.056 0.944 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 -6.366 -7.234 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.299 3.701 5 O -0.370 6.370 6 C -0.068 4.068 7 N -0.239 5.239 8 C 0.059 3.941 9 C -0.535 4.535 10 H 0.089 0.911 11 C -0.147 4.147 12 N -0.541 5.541 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.197 1.197 17 C -0.003 4.003 18 H 0.086 0.914 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.071 4.071 22 N -0.318 5.318 23 C -0.114 4.114 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.126 -7.560 -6.793 13.659 hybrid contribution 0.959 1.315 0.027 1.627 sum -8.167 -6.245 -6.766 12.308 Atomic orbital electron populations 1.21788 0.93064 1.02577 1.03359 1.22899 0.94943 0.81046 1.02343 1.86507 1.25595 1.31702 1.84870 1.24102 0.79787 0.93533 0.72630 1.90634 1.60054 1.42789 1.43570 1.21661 0.91973 0.89161 1.04015 1.62026 1.02137 1.39191 1.20499 1.20048 0.94933 0.83934 0.95170 1.21236 0.98657 0.95324 1.38234 0.91141 1.24970 0.98510 0.95041 0.96162 1.69945 1.37447 1.00401 1.46263 0.86548 0.84362 0.78323 0.78571 1.20782 1.21358 1.19679 1.21469 0.97469 0.95202 0.86162 0.91380 1.21846 0.95552 1.03814 0.94264 1.21605 1.00160 0.97202 0.96505 1.21908 0.88083 0.97826 0.99268 1.60289 1.16913 1.46366 1.08275 1.22796 0.99628 1.00142 0.88858 0.91578 0.91634 0.90606 0.91594 0.91494 0.87066 0.91551 0.97015 0.95346 0.92989 0.91833 0.88143 0.92274 0.92027 0.91733 0.94963 0.84968 0.92580 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.63 10.22 -39.28 -0.40 -6.03 16 4 C 0.46 8.20 7.50 36.00 0.27 8.47 16 5 O -0.49 -10.08 15.27 -18.74 -0.29 -10.37 16 6 C 0.06 1.10 5.48 -4.98 -0.03 1.07 16 7 N -0.51 -10.93 3.92 -229.43 -0.90 -11.83 16 8 C 0.18 4.45 4.52 -4.97 -0.02 4.43 16 9 C -0.50 -13.27 6.99 -34.44 -0.24 -13.51 16 10 H 0.07 1.92 6.61 -52.49 -0.35 1.57 16 11 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 12 N -0.90 -25.69 13.28 55.43 0.74 -24.96 16 13 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.11 2.09 2.06 -67.65 -0.14 1.95 16 18 H 0.07 1.39 6.89 -51.93 -0.36 1.04 16 19 C -0.12 -2.34 4.25 -26.62 -0.11 -2.45 16 20 C -0.12 -1.92 6.09 -26.65 -0.16 -2.08 16 21 C 0.06 0.90 6.55 -3.83 -0.03 0.88 16 22 N -0.69 -10.78 6.84 -113.82 -0.78 -11.56 16 23 C 0.02 0.29 5.22 -3.83 -0.02 0.27 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.11 1.90 7.52 -51.93 -0.39 1.51 16 30 H 0.07 1.07 6.31 -51.92 -0.33 0.74 16 31 H 0.01 0.31 5.04 -51.93 -0.26 0.05 16 32 H 0.03 0.73 7.43 -51.93 -0.39 0.35 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 35 H 0.10 2.28 5.44 -51.92 -0.28 1.99 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.33 4.47 8.90 -39.29 -0.35 4.12 16 41 H 0.06 1.15 5.79 -51.93 -0.30 0.84 16 42 H 0.06 1.01 6.58 -51.93 -0.34 0.67 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -30.11 327.20 -8.39 -38.50 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.71 Total: 4.57 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 0.03 Total: 0.45 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.94 Total: -48.34 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.69 Total: -16.40 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.11 -8.39 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246908917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.710 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds