Wall clock time and date at job start Mon Mar 30 2020 01:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.46919 * 2 1 4 4 C 1.34237 * 117.00134 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99739 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00169 * 180.02562 * 4 3 2 7 7 N 1.46900 * 109.47017 * 185.10306 * 6 4 3 8 8 C 1.46907 * 110.99875 * 199.80004 * 7 6 4 9 9 C 1.50698 * 109.46878 * 151.47795 * 8 7 6 10 10 H 1.07994 * 120.00206 * 2.69404 * 9 8 7 11 11 C 1.37879 * 119.99931 * 182.68998 * 9 8 7 12 12 N 1.31509 * 119.99684 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00104 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46877 * 90.00412 * 13 11 9 15 15 H 1.48495 * 109.47306 * 210.00170 * 13 11 9 16 16 H 1.48503 * 109.47232 * 330.00423 * 13 11 9 17 17 C 1.46897 * 111.00078 * 75.84819 * 7 6 4 18 18 H 1.08997 * 109.53638 * 311.88249 * 17 7 6 19 19 C 1.53092 * 109.49083 * 191.78851 * 17 7 6 20 20 C 1.53118 * 109.16109 * 182.39962 * 19 17 7 21 21 C 1.53042 * 109.27722 * 57.65327 * 20 19 17 22 22 N 1.46847 * 109.52242 * 300.82545 * 21 20 19 23 23 C 1.46843 * 111.20018 * 61.74006 * 22 21 20 24 24 H 1.08999 * 109.47125 * 299.99694 * 1 2 3 25 25 H 1.08997 * 109.47168 * 60.00402 * 1 2 3 26 26 H 1.09007 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47125 * 240.00306 * 2 1 3 28 28 H 1.08999 * 109.47642 * 119.99801 * 2 1 3 29 29 H 1.09001 * 109.47608 * 65.09562 * 6 4 3 30 30 H 1.09008 * 109.46979 * 305.10166 * 6 4 3 31 31 H 1.09002 * 109.47236 * 271.47874 * 8 7 6 32 32 H 1.09000 * 109.46796 * 31.48253 * 8 7 6 33 33 H 0.97007 * 120.00343 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.52656 * 62.49296 * 19 17 7 35 35 H 1.09007 * 109.52610 * 302.30333 * 19 17 7 36 36 H 1.09002 * 109.50109 * 297.71591 * 20 19 17 37 37 H 1.08998 * 109.54043 * 177.61491 * 20 19 17 38 38 H 1.09000 * 109.45913 * 180.81111 * 21 20 19 39 39 H 1.08994 * 109.45894 * 60.83869 * 21 20 19 40 40 H 1.00899 * 110.99947 * 185.83984 * 22 21 20 41 41 H 1.08998 * 109.46315 * 58.27497 * 23 22 21 42 42 H 1.08997 * 109.46432 * 178.25203 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3825 2.8628 -0.1239 8 6 6.0139 4.1079 0.3334 9 6 7.3950 3.8081 0.8565 10 1 7.7833 2.8014 0.8100 11 6 8.1629 4.8190 1.3945 12 7 7.6899 6.0447 1.4515 13 14 9.8751 4.4475 2.0424 14 1 10.8653 4.6150 0.9485 15 1 10.1986 5.3817 3.1504 16 1 9.9225 3.0502 2.5433 17 6 5.7785 2.5474 -1.5029 18 1 5.1925 1.7033 -1.8664 19 6 7.2666 2.1893 -1.5378 20 6 7.6849 1.9205 -2.9860 21 6 7.3816 3.1557 -3.8372 22 7 5.9458 3.4565 -3.7713 23 6 5.5303 3.7644 -2.3969 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.6601 3.4382 0.9325 30 1 3.5130 3.4996 -0.8403 31 1 6.0849 4.8068 -0.5002 32 1 5.4125 4.5498 1.1278 33 1 8.2299 6.7560 1.8304 34 1 7.4408 1.2969 -0.9367 35 1 7.8503 3.0186 -1.1380 36 1 7.1289 1.0665 -3.3728 37 1 8.7530 1.7063 -3.0231 38 1 7.6651 2.9622 -4.8717 39 1 7.9486 4.0059 -3.4582 40 1 5.7048 4.2087 -4.3990 41 1 6.1059 4.6119 -2.0247 42 1 4.4691 4.0131 -2.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246908917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:14 Heat of formation + Delta-G solvation = -96.087641 kcal Electronic energy + Delta-G solvation = -22098.196742 eV Core-core repulsion = 18884.589000 eV Total energy + Delta-G solvation = -3213.607742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.56820 -40.23162 -37.69843 -36.78557 -34.64268 -32.88456 -32.60260 -30.74306 -30.00979 -27.16520 -24.90275 -24.40031 -24.10251 -22.61658 -21.51681 -20.10652 -18.79823 -18.38089 -17.94357 -17.46999 -17.05126 -16.59448 -16.26351 -15.60290 -15.40761 -15.12711 -14.84182 -14.64514 -14.13483 -14.06684 -13.83161 -13.63181 -13.54733 -13.10438 -12.98784 -12.87393 -12.73833 -12.50823 -12.46876 -12.35719 -11.93172 -11.78270 -11.48926 -11.44338 -11.31712 -11.14764 -11.01069 -10.51623 -9.51719 -8.92577 -8.14295 -6.18393 1.26186 1.40307 1.42192 1.52563 1.64087 2.43019 3.06663 3.18754 3.44270 3.82248 3.96939 4.02273 4.04590 4.13900 4.16311 4.19939 4.30182 4.36341 4.38636 4.48305 4.62544 4.75170 4.85266 4.87959 4.95169 4.98588 5.00378 5.14818 5.17286 5.21920 5.29071 5.46631 5.48734 5.67874 5.74287 5.92867 6.11128 6.38356 6.51483 6.52493 6.88723 6.92735 7.46420 8.94676 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.006121 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.581755 B = 4573.511400 C = 5605.305198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.467 3.533 5 O -0.520 6.520 6 C 0.058 3.942 7 N -0.531 5.531 8 C 0.200 3.800 9 C -0.502 4.502 10 H 0.059 0.941 11 C 0.008 3.992 12 N -0.931 5.931 13 Si 0.952 3.048 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.110 3.890 18 H 0.064 0.936 19 C -0.115 4.115 20 C -0.111 4.111 21 C 0.059 3.941 22 N -0.682 5.682 23 C 0.029 3.971 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.003 0.997 32 H 0.009 0.991 33 H 0.262 0.738 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.018 0.982 40 H 0.351 0.649 41 H 0.028 0.972 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 -7.058 -8.484 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.310 3.690 5 O -0.407 6.407 6 C -0.071 4.071 7 N -0.256 5.256 8 C 0.075 3.925 9 C -0.540 4.540 10 H 0.078 0.922 11 C -0.190 4.190 12 N -0.572 5.572 13 Si 0.778 3.222 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.197 1.197 17 C 0.001 3.999 18 H 0.082 0.918 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.070 4.070 22 N -0.314 5.314 23 C -0.102 4.102 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.107 0.893 31 H 0.021 0.979 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.036 0.964 40 H 0.169 0.831 41 H 0.046 0.954 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.873 -8.253 -8.064 15.186 hybrid contribution 1.086 1.455 0.397 1.859 sum -8.786 -6.798 -7.667 13.498 Atomic orbital electron populations 1.21811 0.90007 1.04394 1.03759 1.23271 0.97275 0.79351 1.02244 1.86495 1.23767 1.33738 1.84132 1.23927 0.80499 0.92856 0.71763 1.90622 1.61044 1.43697 1.45376 1.21701 0.90120 0.89966 1.05278 1.61861 1.04289 1.37537 1.21908 1.19698 0.93848 0.84906 0.94082 1.21450 0.99914 0.94761 1.37899 0.92250 1.25663 1.01886 0.94897 0.96533 1.70039 1.38763 1.01122 1.47306 0.85632 0.80444 0.77954 0.78141 1.19966 1.20946 1.19693 1.21418 0.97014 0.95726 0.85716 0.91753 1.21741 0.95575 1.01533 0.96435 1.21581 1.01219 0.98075 0.94090 1.21955 0.87641 0.96593 1.00802 1.60279 1.17146 1.46967 1.07030 1.22556 0.99989 0.97930 0.89760 0.91274 0.91113 0.88058 0.91605 0.91830 0.86491 0.89293 0.97909 0.97331 0.92925 0.93828 0.91176 0.91557 0.90524 0.88389 0.96402 0.83092 0.95434 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.29 71.98 0.74 -1.42 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.36 -10.68 10.22 -51.49 -0.53 -11.20 16 4 C 0.47 16.51 7.50 71.23 0.53 17.04 16 5 O -0.52 -21.65 15.27 21.98 0.34 -21.31 16 6 C 0.06 2.08 5.48 85.56 0.47 2.55 16 7 N -0.53 -22.98 3.92 -879.79 -3.45 -26.43 16 8 C 0.20 9.98 4.52 85.56 0.39 10.37 16 9 C -0.50 -27.56 6.99 25.60 0.18 -27.38 16 10 H 0.06 3.34 6.61 -2.91 -0.02 3.32 16 11 C 0.01 0.44 5.46 84.66 0.46 0.91 16 12 N -0.93 -53.99 13.28 21.45 0.28 -53.71 16 13 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 17 C 0.11 4.35 2.06 44.96 0.09 4.44 16 18 H 0.06 2.61 6.89 -2.39 -0.02 2.59 16 19 C -0.11 -4.66 4.25 30.66 0.13 -4.53 16 20 C -0.11 -3.53 6.09 30.65 0.19 -3.34 16 21 C 0.06 1.71 6.55 86.33 0.57 2.27 16 22 N -0.68 -20.03 6.84 -514.02 -3.52 -23.54 16 23 C 0.03 1.01 5.22 86.33 0.45 1.46 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.07 1.53 8.13 -2.39 -0.02 1.52 16 28 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 29 H 0.12 4.00 7.52 -2.39 -0.02 3.98 16 30 H 0.09 2.76 6.31 -2.38 -0.02 2.74 16 31 H 0.00 0.18 5.04 -2.39 -0.01 0.16 16 32 H 0.01 0.46 7.43 -2.39 -0.02 0.44 16 33 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 34 H 0.04 1.88 8.13 -2.39 -0.02 1.86 16 35 H 0.07 3.27 5.44 -2.38 -0.01 3.26 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.35 8.51 8.90 -89.70 -0.80 7.71 16 41 H 0.03 1.14 5.79 -2.39 -0.01 1.13 16 42 H 0.07 2.38 6.58 -2.39 -0.02 2.36 16 Total: -1.00 -65.38 327.20 0.01 -65.37 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.22 Total: 20.55 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.64 Total: 4.01 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -6.68 Total: -103.68 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.19 Total: -32.52 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.38 0.01 -65.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246908917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.718 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds